scikit-network 0.33.3__cp312-cp312-macosx_10_13_x86_64.whl

scikit_network-0.33.3.dist-info/METADATA

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+Metadata-Version: 2.4
+Name: scikit-network
+Version: 0.33.3
+Summary: Graph algorithms
+Author: Scikit-network team
+Maintainer-email: Thomas Bonald <bonald@enst.fr>
+License: BSD License
+Project-URL: Repository, https://github.com/sknetwork-team/scikit-network
+Project-URL: Documentation, https://scikit-network.readthedocs.io/
+Project-URL: Changelog, https://github.com/sknetwork-team/scikit-network/blob/master/HISTORY.rst
+Keywords: sknetwork
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Information Technology
+Classifier: Intended Audience :: Education
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: BSD License
+Classifier: Natural Language :: English
+Classifier: Programming Language :: Cython
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Python: >=3.9
+Description-Content-Type: text/x-rst
+License-File: LICENSE
+License-File: AUTHORS.rst
+Requires-Dist: numpy>=1.22.4
+Requires-Dist: scipy>=1.7.3
+Provides-Extra: test
+Requires-Dist: pytest; extra == "test"
+Requires-Dist: note; extra == "test"
+Requires-Dist: pluggy>=0.7.1; extra == "test"
+Dynamic: license-file
+
+.. image:: https://perso.telecom-paristech.fr/bonald/logo_sknetwork.png
+    :align: right
+    :width: 150px
+    :alt: logo sknetwork
+
+
+
+.. image:: https://img.shields.io/pypi/v/scikit-network.svg
+        :target: https://pypi.python.org/pypi/scikit-network
+
+.. image:: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml/badge.svg
+        :target: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml
+
+.. image:: https://readthedocs.org/projects/scikit-network/badge/?version=latest
+        :target: https://scikit-network.readthedocs.io/en/latest/?badge=latest
+        :alt: Documentation Status
+
+.. image:: https://codecov.io/gh/sknetwork-team/scikit-network/branch/master/graph/badge.svg
+        :target: https://codecov.io/gh/sknetwork-team/scikit-network
+
+.. image:: https://img.shields.io/pypi/pyversions/scikit-network.svg
+        :target: https://pypi.python.org/pypi/scikit-network
+
+Free software library in Python for machine learning on graphs:
+
+* Memory-efficient representation of graphs as sparse matrices in scipy_ format
+* Fast algorithms
+* Simple API inspired by scikit-learn_
+
+.. _scipy: https://www.scipy.org
+.. _scikit-learn: https://scikit-learn.org/
+
+Resources
+---------
+
+* Free software: BSD license
+* GitHub: https://github.com/sknetwork-team/scikit-network
+* Documentation: https://scikit-network.readthedocs.io
+
+Quick start
+-----------
+
+Install scikit-network:
+
+.. code-block:: console
+
+    $ pip install scikit-network
+
+Import scikit-network::
+
+    import sknetwork
+
+Overview
+--------
+
+An overview of the package is presented in this `notebook <https://scikit-network.readthedocs.io/en/latest/tutorials/overview/index.html>`_.
+
+Documentation
+-------------
+
+The documentation is structured as follows:
+
+* `Getting started <https://scikit-network.readthedocs.io/en/latest/first_steps.html>`_: First steps to install, import and use scikit-network.
+* `User manual <https://scikit-network.readthedocs.io/en/latest/reference/data.html>`_: Description of each function and object of scikit-network.
+* `Tutorials <https://scikit-network.readthedocs.io/en/latest/tutorials/data/index.html>`_: Application of the main tools to toy examples.
+* `Examples <https://scikit-network.readthedocs.io/en/latest/use_cases/text.html>`_: Examples combining several tools on specific use cases.
+* `About <https://scikit-network.readthedocs.io/en/latest/authors.html>`_: Authors, history of the library, how to contribute, index of functions and objects.
+
+Citing
+------
+
+If you want to cite scikit-network, please refer to the publication in
+the `Journal of Machine Learning Research <https://jmlr.org>`_:
+
+.. code::
+
+    @article{JMLR:v21:20-412,
+      author  = {Thomas Bonald and Nathan de Lara and Quentin Lutz and Bertrand Charpentier},
+      title   = {Scikit-network: Graph Analysis in Python},
+      journal = {Journal of Machine Learning Research},
+      year    = {2020},
+      volume  = {21},
+      number  = {185},
+      pages   = {1-6},
+      url     = {http://jmlr.org/papers/v21/20-412.html}
+    }

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scikit_network-0.33.3.dist-info/WHEEL

@@ -0,0 +1,6 @@
+Wheel-Version: 1.0
+Generator: setuptools (80.4.0)
+Root-Is-Purelib: false
+Tag: cp312-cp312-macosx_10_13_x86_64
+Generator: delocate 0.13.0
+

scikit_network-0.33.3.dist-info/licenses/AUTHORS.rst

@@ -0,0 +1,43 @@
+=======
+Credits
+=======
+
+The project started with the Master internship of Bertrand Charpentier and
+the PhD theses of Nathan de Lara and Quentin Lutz, under the supervision of Thomas Bonald at Télécom Paris,
+Institut Polytechnique de Paris.
+
+Development Lead
+----------------
+
+* Thomas Bonald <thomas.bonald@telecom-paris.fr>
+* Simon Delarue <simon.delarue@telecom-paris.fr>
+* Marc Jeanmougin <marc.jeanmougin@telecom-paris.fr>
+
+Former lead
+-----------
+
+* Quentin Lutz <quentin.lutz@telecom-paris-alumni.fr>
+* Nathan de Lara <nathan.de-lara@polytechnique.org>
+
+Contributors
+------------
+
+* Bertrand Charpentier
+* Maximilien Danisch
+* François Durand
+* Alexandre Hollocou
+* Fabien Mathieu
+* Yohann Robert
+* Julien Simonnet
+* Alexis Barreaux
+* Rémi Jaylet
+* Victor Manach
+* Pierre Pébereau
+* Armand Boschin
+* Tiphaine Viard
+* Flávio Juvenal
+* Wenzhuo Zhao
+* Henry Carscadden
+* Yiwen Peng
+* Ahmed Zaiou
+* Laurène David

scikit_network-0.33.3.dist-info/licenses/LICENSE

@@ -0,0 +1,34 @@
+
+
+BSD License
+
+Copyright (c) 2018, Scikit-network Developers
+Bertrand Charpentier <bertrand.charpentier@live.fr>
+Thomas Bonald <thomas.bonald@telecom-paristech.fr>
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without modification,
+are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice, this
+  list of conditions and the following disclaimer in the documentation and/or
+  other materials provided with the distribution.
+
+* Neither the name of the copyright holder nor the names of its
+  contributors may be used to endorse or promote products derived from this
+  software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
+INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
+BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY
+OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
+OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
+OF THE POSSIBILITY OF SUCH DAMAGE.
+

scikit_network-0.33.3.dist-info/top_level.txt

@@ -0,0 +1 @@
+sknetwork

sknetwork/__init__.py

@@ -0,0 +1,21 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""Top-level package for scikit-network"""
+
+__author__ = """scikit-network team"""
+__email__ = "thomas.bonald@telecom-paris.fr"
+__version__ = '0.33.0'
+
+import sknetwork.topology
+import sknetwork.path
+import sknetwork.classification
+import sknetwork.clustering
+import sknetwork.embedding
+import sknetwork.hierarchy
+import sknetwork.linalg
+import sknetwork.linkpred
+import sknetwork.ranking
+import sknetwork.data
+import sknetwork.utils
+import sknetwork.visualization
+import sknetwork.gnn

sknetwork/base.py

@@ -0,0 +1,67 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created in June 2019
+@author: Quentin Lutz <qlutz@enst.fr>
+"""
+import inspect
+
+
+class Algorithm:
+    """Base class for all algorithms.
+    """
+    def get_params(self):
+        """Get parameters as dictionary.
+
+        Returns
+        -------
+        params : dict
+            Parameters of the algorithm.
+        """
+        signature = inspect.signature(self.__class__.__init__)
+        params_exclude = ['self', 'random_state', 'verbose']
+        params = dict()
+        for param in signature.parameters.values():
+            name = param.name
+            if name not in params_exclude:
+                try:
+                    value = self.__dict__[name]
+                except KeyError:
+                    continue
+                params[name] = value
+        return params
+
+    def set_params(self, params: dict) -> 'Algorithm':
+        """Set parameters of the algorithm.
+
+        Parameters
+        ----------
+        params : dict
+            Parameters of the algorithm.
+
+        Returns
+        -------
+        self : :class:`Algorithm`
+        """
+        valid_params = self.get_params()
+        if type(params) is not dict:
+            raise ValueError('The parameters must be given as a dictionary.')
+        for name, value in params.items():
+            if name not in valid_params:
+                raise ValueError(f'Invalid parameter: {name}.')
+            setattr(self, name, value)
+        return self
+
+    def __repr__(self):
+        params_string = []
+        for name, value in self.get_params().items():
+            if type(value) == str:
+                value = "'" + value + "'"
+            else:
+                value = str(value)
+            params_string.append(name + '=' + value)
+        return self.__class__.__name__ + '(' + ', '.join(params_string) + ')'
+
+    def fit(self, *args, **kwargs):
+        """Fit algorithm to data."""
+        raise NotImplementedError

sknetwork/classification/__init__.py

@@ -0,0 +1,8 @@
+"""classification module"""
+from sknetwork.classification.base import BaseClassifier
+from sknetwork.classification.diffusion import DiffusionClassifier
+from sknetwork.classification.knn import NNClassifier
+from sknetwork.classification.metrics import get_accuracy_score, get_confusion_matrix, get_f1_score, get_f1_scores, \
+    get_average_f1_score
+from sknetwork.classification.pagerank import PageRankClassifier
+from sknetwork.classification.propagation import Propagation