scikit-network 0.33.0__cp311-cp311-macosx_11_0_arm64.whl → 0.33.2__cp311-cp311-macosx_11_0_arm64.whl

scikit_network-0.33.2.dist-info/METADATA

@@ -0,0 +1,122 @@
+Metadata-Version: 2.4
+Name: scikit-network
+Version: 0.33.2
+Summary: Graph algorithms
+Author: Scikit-network team
+Maintainer-email: Thomas Bonald <bonald@enst.fr>
+License: BSD License
+Project-URL: Repository, https://github.com/sknetwork-team/scikit-network
+Project-URL: Documentation, https://scikit-network.readthedocs.io/
+Project-URL: Changelog, https://github.com/sknetwork-team/scikit-network/blob/master/HISTORY.rst
+Keywords: sknetwork
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Information Technology
+Classifier: Intended Audience :: Education
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: BSD License
+Classifier: Natural Language :: English
+Classifier: Programming Language :: Cython
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Python: >=3.9
+Description-Content-Type: text/x-rst
+License-File: LICENSE
+License-File: AUTHORS.rst
+Requires-Dist: numpy>=1.22.4
+Requires-Dist: scipy>=1.7.3
+Provides-Extra: test
+Requires-Dist: pytest; extra == "test"
+Requires-Dist: note; extra == "test"
+Requires-Dist: pluggy>=0.7.1; extra == "test"
+Dynamic: license-file
+
+.. image:: https://perso.telecom-paristech.fr/bonald/logo_sknetwork.png
+    :align: right
+    :width: 150px
+    :alt: logo sknetwork
+
+
+
+.. image:: https://img.shields.io/pypi/v/scikit-network.svg
+        :target: https://pypi.python.org/pypi/scikit-network
+
+.. image:: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml/badge.svg
+        :target: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml
+
+.. image:: https://readthedocs.org/projects/scikit-network/badge/?version=latest
+        :target: https://scikit-network.readthedocs.io/en/latest/?badge=latest
+        :alt: Documentation Status
+
+.. image:: https://codecov.io/gh/sknetwork-team/scikit-network/branch/master/graph/badge.svg
+        :target: https://codecov.io/gh/sknetwork-team/scikit-network
+
+.. image:: https://img.shields.io/pypi/pyversions/scikit-network.svg
+        :target: https://pypi.python.org/pypi/scikit-network
+
+Free software library in Python for machine learning on graphs:
+
+* Memory-efficient representation of graphs as sparse matrices in scipy_ format
+* Fast algorithms
+* Simple API inspired by scikit-learn_
+
+.. _scipy: https://www.scipy.org
+.. _scikit-learn: https://scikit-learn.org/
+
+Resources
+---------
+
+* Free software: BSD license
+* GitHub: https://github.com/sknetwork-team/scikit-network
+* Documentation: https://scikit-network.readthedocs.io
+
+Quick start
+-----------
+
+Install scikit-network:
+
+.. code-block:: console
+
+    $ pip install scikit-network
+
+Import scikit-network::
+
+    import sknetwork
+
+Overview
+--------
+
+An overview of the package is presented in this `notebook <https://scikit-network.readthedocs.io/en/latest/tutorials/overview/index.html>`_.
+
+Documentation
+-------------
+
+The documentation is structured as follows:
+
+* `Getting started <https://scikit-network.readthedocs.io/en/latest/first_steps.html>`_: First steps to install, import and use scikit-network.
+* `User manual <https://scikit-network.readthedocs.io/en/latest/reference/data.html>`_: Description of each function and object of scikit-network.
+* `Tutorials <https://scikit-network.readthedocs.io/en/latest/tutorials/data/index.html>`_: Application of the main tools to toy examples.
+* `Examples <https://scikit-network.readthedocs.io/en/latest/use_cases/text.html>`_: Examples combining several tools on specific use cases.
+* `About <https://scikit-network.readthedocs.io/en/latest/authors.html>`_: Authors, history of the library, how to contribute, index of functions and objects.
+
+Citing
+------
+
+If you want to cite scikit-network, please refer to the publication in
+the `Journal of Machine Learning Research <https://jmlr.org>`_:
+
+.. code::
+
+    @article{JMLR:v21:20-412,
+      author  = {Thomas Bonald and Nathan de Lara and Quentin Lutz and Bertrand Charpentier},
+      title   = {Scikit-network: Graph Analysis in Python},
+      journal = {Journal of Machine Learning Research},
+      year    = {2020},
+      volume  = {21},
+      number  = {185},
+      pages   = {1-6},
+      url     = {http://jmlr.org/papers/v21/20-412.html}
+    }

{scikit_network-0.33.0.dist-info → scikit_network-0.33.2.dist-info}/RECORD

@@ -1,19 +1,26 @@
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-sknetwork/hierarchy/paris.cpython-311-darwin.so,sha256=PU-4hSjVRKxth0C9OKEUxWTHNdZr1iLxeAUE2O9Zz-o,292792
+sknetwork/hierarchy/paris.cpython-311-darwin.so,sha256=gVEcsXnnKN5eXwLqU3iSkUsJBpsxNCtzUJ7qqkJlaf8,292888
 sknetwork/hierarchy/louvain_hierarchy.py,sha256=PhetHYpmsnI7yC-rbYAUXhNiBV9QNKMDbrfz9l0fskc,9846
+sknetwork/hierarchy/paris.cpp,sha256=BaMWFjx53FQzEpqBi9PsL60hGj5uavp-JxeYOzKMOsg,1499638
 sknetwork/hierarchy/base.py,sha256=MoxBiSsEJOq77YmXj_bpf4vUiPLSpQn8fnUX7YIqyd8,2693
 sknetwork/hierarchy/tests/test_postprocess.py,sha256=OSrWE0gT0AcPI4LKmUL-Blfg5ErxnjS3d4rPNnA63_Y,2209
 sknetwork/hierarchy/tests/test_metrics.py,sha256=IHlsdJXeHqPU8_SBm4eIXua5ZhyRIAUH4cAtVNNR7Ng,3160
@@ -127,24 +143,26 @@ sknetwork/embedding/tests/test_API.py,sha256=2c0O8S0u0hF23iys7QLHJJOz2W79rHMeEO2
 sknetwork/embedding/tests/test_force_atlas.py,sha256=-YM4HSF5Nvpm8e4SoCHiA2o7yAkm0h_ys7GRaJ1wloI,1120
 sknetwork/embedding/tests/test_random_projection.py,sha256=2bUOCw66tUKP775pGPd5STj0UmRuwvBtI5CgY8HeHKI,1193
 sknetwork/embedding/tests/test_spectral.py,sha256=CH-F8fM3cYoxhjpob1m7wZV-tEr8XFD6Lxa_bFsLv3A,3897
-sknetwork/clustering/leiden_core.cpython-311-darwin.so,sha256=wO7hKO2v5GFGcF_x5H9YQiX6MjooOCA6cA4R1eorBsw,250976
+sknetwork/clustering/leiden_core.cpython-311-darwin.so,sha256=hIXv1tVt1oO15rMXc4xqLth--xYs0kwpN-bIy-9uu2M,250992
 sknetwork/clustering/leiden_core.pyx,sha256=7HGdeX6iMnSs52Px44-__kN9JhHueaQUvCmrkIGTalg,4300
-sknetwork/clustering/metrics.py,sha256=VJPgmB1OvxA0SOaIQIGyJDUP1cgWFElnfdVaQ2krYrg,3060
+sknetwork/clustering/metrics.py,sha256=qnQo70cLs_Rebj3Z1cxmktGw1qQGAAA8yzqj-lC8Tss,3067
 sknetwork/clustering/leiden.py,sha256=yL5N-9ny6XAj6La2-PBcsieRl4SVx8wxwVGvS1tMr-o,9682
+sknetwork/clustering/louvain_core.cpp,sha256=FIpGgU7Wu4G4kkf1vYpH55j2xcKeGK794fs0GBTfA68,1183002
 sknetwork/clustering/postprocess.py,sha256=4hx5VTQmqS2Ld2P2kvXoyvVanXVg3bMA619IHS2jWHM,2039
 sknetwork/clustering/__init__.py,sha256=Ab-rmioxlaMoghrzd1RMr-L4zyrqIM8XznqrjBPGE28,435
 sknetwork/clustering/kcenters.py,sha256=RFEx35vPUm9a4mzCbDwv-PmePCsdQwbuKAeaRizBMxY,8689
-sknetwork/clustering/louvain.py,sha256=nFKEsrEuOH2k9iruT7SGo0kGDtcYzW2Xn7wBAxe767o,10825
+sknetwork/clustering/louvain.py,sha256=4IfTjO_WbYi5XfJWC86kOswOPRhE4LSufsiRBcd52nU,10825
 sknetwork/clustering/propagation_clustering.py,sha256=ABZZtyojkrXfzsMwEcxqphzHgFC5q8sECOyanvK9D3o,3781
-sknetwork/clustering/louvain_core.cpython-311-darwin.so,sha256=ljPJQ8zm24t8JjH-OJsi8CsIdUcYt8FFvtTRLUKOS54,250336
+sknetwork/clustering/louvain_core.cpython-311-darwin.so,sha256=ekVHz_T6fmjCa4FO3XlRsPFvldWGmQXM6_LaK7H3qro,250352
 sknetwork/clustering/louvain_core.pyx,sha256=pMqt7WukTkBOpjofmiXMYHqRX69mkquEMapDdoskiQM,4089
 sknetwork/clustering/base.py,sha256=dCF4K3nbKY24kzFeDAy7Fp-b9jDBzEoG3jj1ozuu_W8,5932
+sknetwork/clustering/leiden_core.cpp,sha256=XDGmG34zqmE-hoCHkErevPu4q237p2KgMxQMlmsq41Q,1202438
 sknetwork/clustering/tests/test_postprocess.py,sha256=WSmAlqB-6Nw3eoL3NaOyNlpPr7GVnNnllkPVdyE9rXI,1378
 sknetwork/clustering/tests/test_kcenters.py,sha256=laO1QSJ-yGlroB5XtrC15jbRK0krYZK5sIRDHBUZL30,1977
 sknetwork/clustering/tests/test_metrics.py,sha256=fbVYg2s8DXQdiYHUNuVjFMtEJg4od1Vej25mgHhGDu0,1818
 sknetwork/clustering/tests/__init__.py,sha256=Ta0XKY7pklRvHyUY3Jlow3A2V4REa5geZG74xPz80Tc,27
 sknetwork/clustering/tests/test_leiden.py,sha256=3KSXvxUP9H4tCJQXUfWt-45-ltyD0FrVgYjXDvRN-yQ,1155
-sknetwork/clustering/tests/test_louvain.py,sha256=6eQPoKodZLBafNgpX1_zBzPzGY5w7QKzWsLuoEVZEaE,4678
+sknetwork/clustering/tests/test_louvain.py,sha256=R9GI3IymlwJGHD5owOJZSrYJ5pJp9WdRWH2xnNO2QC8,4871
 sknetwork/clustering/tests/test_API.py,sha256=Eez17EngcirVHVVoybClXS5314_Yz54JFzXldubEdgg,1528
 sknetwork/linkpred/nn.py,sha256=tY-qYlp0j9WCvdoHkZ9EKzCD_GlDu7tQpKD7-aC20rE,4030
 sknetwork/linkpred/__init__.py,sha256=pFtM52OhDK69ceeiRyH1MDse0EbD8fqyhOsWWih47gM,72
@@ -166,13 +184,13 @@ sknetwork/utils/tests/test_check.py,sha256=WOLQ7J4eM4YHsSxyBNU5yPquq-0dB5FyD_ttt
 sknetwork/utils/tests/test_neighbors.py,sha256=vF697D0cTfx4Limcmbre5JkJcLi1rUX0tS_JviX11Zg,1426
 sknetwork/utils/tests/test_format.py,sha256=xSvz_IbxNnei8IrEysIOi8YpX_a6edxVE41g_lSx1mk,2245
 sknetwork/gnn/base_layer.py,sha256=o5CbTVXY7Y1_TyNEMkp7P2va2HLLIq_MgnOxZ7PGQmg,3948
-sknetwork/gnn/base_activation.py,sha256=XogZDdhl3QDyADvWJhMTGSnVYsKPI3PDHPu89yPL1VI,2306
+sknetwork/gnn/base_activation.py,sha256=vSsIQqN8fmLl3W6v6ZlPd0Hy-lfq5iEf_oEQ7yMY-3k,2307
 sknetwork/gnn/__init__.py,sha256=m2lkDJoJZocJ18scpArsUHuzePZ8Q-ue7D3yXQ5H_RM,519
 sknetwork/gnn/loss.py,sha256=P0un3iqbnFLrBbYODznVAoU_J2qAZuqHAPLiae0LCtI,5162
 sknetwork/gnn/activation.py,sha256=D7o4FdbDMrBa2PQrWrvplCf14QOSzZ67d9eWN9bHY-M,3560
 sknetwork/gnn/neighbor_sampler.py,sha256=TXdMRFwiT8sOdl6-S-flQZ5Rjrx1hwTzFqqiR_8PHTQ,1864
 sknetwork/gnn/utils.py,sha256=A0kuBe29Eg90cEzRAgw4YmnShnzoq6ai_-01IBAf63g,4349
-sknetwork/gnn/gnn_classifier.py,sha256=yvh5P3T3AmpEI8xNBERSkLumifBzz6gRLgQQ5aaASd0,12610
+sknetwork/gnn/gnn_classifier.py,sha256=ofqyqkBrRSAbDK5fr6cWjZVP6DMVhEQZr2wiF0i7y64,12617
 sknetwork/gnn/layer.py,sha256=i0XiAutNal9ImAGqMtSLVEq_QiqZoGAlAWwlSGrNY8Q,5526
 sknetwork/gnn/optimizer.py,sha256=vsCgfPoJtYMWREnR4tBsfPb0Ed-rHR0poBr-75lE57s,5782
 sknetwork/gnn/base.py,sha256=QZ_pNi2-edAUpu-2C93DWfooS_sHulO6HL6vK108lhc,5708
@@ -208,9 +226,3 @@ sknetwork/data/tests/test_models.py,sha256=oP-X_k0vbSB4CwlV4GQVVBAQ9uI_8frFicde5
 sknetwork/data/tests/test_API.py,sha256=LUWZX9pPpZLVuzgAz85sJk6tgKDaXKqc2Fhp91x-E6c,963
 sknetwork/data/tests/test_base.py,sha256=b-0CM1ResLoJXg6-jGmBWFii5JtZrXAhfYiAG70dW1w,312
 sknetwork/data/tests/test_load.py,sha256=9EXkw2TbDAUmpwE-kUTgxZieB4XDLF5drLVvyugX96M,3550
-scikit_network-0.33.0.dist-info/RECORD,,
-scikit_network-0.33.0.dist-info/LICENSE,sha256=zKbJMpbSKgGEUaNr_fKgvJrvw_3W4gnJs5XdLCK5Sxo,1622
-scikit_network-0.33.0.dist-info/WHEEL,sha256=ANsQuXN11eSX1PFSD4UW7vUcpdaOm9VfCH5CSYqUC20,109
-scikit_network-0.33.0.dist-info/AUTHORS.rst,sha256=MIEWJmfpIVmBPo03Xl_6j8kg7cjXicp9WVRQpuVDj9o,923
-scikit_network-0.33.0.dist-info/top_level.txt,sha256=fkwspWQ9B3csqb5ENEOoVciRY6XftnMuz4MvTDQeSsg,10
-scikit_network-0.33.0.dist-info/METADATA,sha256=KSryYoew7nGXScWKHnpxhItQbesZ7N1FBL7mKyZMg_U,14471

{scikit_network-0.33.0.dist-info → scikit_network-0.33.2.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (70.3.0)
+Generator: setuptools (80.4.0)
 Root-Is-Purelib: false
 Tag: cp311-cp311-macosx_11_0_arm64
 

sknetwork/classification/diffusion.py

@@ -55,7 +55,7 @@ class DiffusionClassifier(BaseClassifier):
     >>> labels_true = graph.labels
     >>> labels = {0: labels_true[0], 33: labels_true[33]}
     >>> labels_pred = diffusion.fit_predict(adjacency, labels)
-    >>> round(np.mean(labels_pred == labels_true), 2)
+    >>> float(round(np.mean(labels_pred == labels_true), 2))
     0.97
 
     References

sknetwork/classification/knn.py

@@ -55,7 +55,7 @@ class NNClassifier(BaseClassifier):
     >>> labels_true = graph.labels
     >>> labels = {0: labels_true[0], 33: labels_true[33]}
     >>> labels_pred = classifier.fit_predict(adjacency, labels)
-    >>> round(np.mean(labels_pred == labels_true), 2)
+    >>> float(round(np.mean(labels_pred == labels_true), 2))
     0.82
     """
     def __init__(self, n_neighbors: int = 3, embedding_method: Optional[BaseEmbedding] = None, normalize: bool = True):

sknetwork/classification/metrics.py

@@ -34,7 +34,7 @@ def get_accuracy_score(labels_true: np.ndarray, labels_pred: np.ndarray) -> floa
     >>> import numpy as np
     >>> labels_true = np.array([0, 0, 1, 1])
     >>> labels_pred = np.array([0, 0, 0, 1])
-    >>> round(get_accuracy_score(labels_true, labels_pred), 2)
+    >>> float(round(get_accuracy_score(labels_true, labels_pred), 2))
     0.75
     """
     check_vector_format(labels_true, labels_pred)
@@ -105,7 +105,7 @@ def get_f1_score(labels_true: np.ndarray, labels_pred: np.ndarray, return_precis
     >>> import numpy as np
     >>> labels_true = np.array([0, 0, 1, 1])
     >>> labels_pred = np.array([0, 0, 0, 1])
-    >>> round(get_f1_score(labels_true, labels_pred), 2)
+    >>> float(round(get_f1_score(labels_true, labels_pred), 2))
     0.67
     """
     values = set(labels_true[labels_true >= 0]) | set(labels_pred[labels_pred >= 0])
@@ -188,7 +188,7 @@ def get_average_f1_score(labels_true: np.ndarray, labels_pred: np.ndarray, avera
     >>> import numpy as np
     >>> labels_true = np.array([0, 0, 1, 1])
     >>> labels_pred = np.array([0, 0, 0, 1])
-    >>> round(get_average_f1_score(labels_true, labels_pred), 2)
+    >>> float(round(get_average_f1_score(labels_true, labels_pred), 2))
     0.73
     """
     if average == 'micro':

sknetwork/classification/pagerank.py

@@ -51,7 +51,7 @@ class PageRankClassifier(RankClassifier):
     >>> labels_true = graph.labels
     >>> labels = {0: labels_true[0], 33: labels_true[33]}
     >>> labels_pred = pagerank.fit_predict(adjacency, labels)
-    >>> np.round(np.mean(labels_pred == labels_true), 2)
+    >>> float(np.round(np.mean(labels_pred == labels_true), 2))
     0.97
 
     References

sknetwork/classification/propagation.py

@@ -58,7 +58,7 @@ class Propagation(BaseClassifier):
     >>> labels_true = graph.labels
     >>> labels = {0: labels_true[0], 33: labels_true[33]}
     >>> labels_pred = propagation.fit_predict(adjacency, labels)
-    >>> np.round(np.mean(labels_pred == labels_true), 2)
+    >>> float(np.round(np.mean(labels_pred == labels_true), 2))
     0.94
 
     References