scikit-network 0.30.0__cp38-cp38-win_amd64.whl → 0.32.1__cp38-cp38-win_amd64.whl

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Files changed (187) hide show
  1. {scikit_network-0.30.0.dist-info → scikit_network-0.32.1.dist-info}/AUTHORS.rst +3 -0
  2. {scikit_network-0.30.0.dist-info → scikit_network-0.32.1.dist-info}/METADATA +31 -3
  3. scikit_network-0.32.1.dist-info/RECORD +228 -0
  4. {scikit_network-0.30.0.dist-info → scikit_network-0.32.1.dist-info}/WHEEL +1 -1
  5. sknetwork/__init__.py +1 -1
  6. sknetwork/base.py +67 -0
  7. sknetwork/classification/base.py +24 -24
  8. sknetwork/classification/base_rank.py +17 -25
  9. sknetwork/classification/diffusion.py +35 -35
  10. sknetwork/classification/knn.py +24 -21
  11. sknetwork/classification/metrics.py +1 -1
  12. sknetwork/classification/pagerank.py +10 -10
  13. sknetwork/classification/propagation.py +23 -20
  14. sknetwork/classification/tests/test_diffusion.py +13 -3
  15. sknetwork/classification/vote.cp38-win_amd64.pyd +0 -0
  16. sknetwork/classification/vote.cpp +14482 -10351
  17. sknetwork/classification/vote.pyx +1 -3
  18. sknetwork/clustering/__init__.py +3 -1
  19. sknetwork/clustering/base.py +36 -40
  20. sknetwork/clustering/kcenters.py +253 -0
  21. sknetwork/clustering/leiden.py +241 -0
  22. sknetwork/clustering/leiden_core.cp38-win_amd64.pyd +0 -0
  23. sknetwork/clustering/leiden_core.cpp +31564 -0
  24. sknetwork/clustering/leiden_core.pyx +124 -0
  25. sknetwork/clustering/louvain.py +133 -102
  26. sknetwork/clustering/louvain_core.cp38-win_amd64.pyd +0 -0
  27. sknetwork/clustering/louvain_core.cpp +22457 -18792
  28. sknetwork/clustering/louvain_core.pyx +86 -96
  29. sknetwork/clustering/postprocess.py +2 -2
  30. sknetwork/clustering/propagation_clustering.py +15 -19
  31. sknetwork/clustering/tests/test_API.py +8 -4
  32. sknetwork/clustering/tests/test_kcenters.py +92 -0
  33. sknetwork/clustering/tests/test_leiden.py +34 -0
  34. sknetwork/clustering/tests/test_louvain.py +3 -4
  35. sknetwork/data/__init__.py +2 -1
  36. sknetwork/data/base.py +28 -0
  37. sknetwork/data/load.py +38 -37
  38. sknetwork/data/models.py +18 -18
  39. sknetwork/data/parse.py +54 -33
  40. sknetwork/data/test_graphs.py +2 -2
  41. sknetwork/data/tests/test_API.py +1 -1
  42. sknetwork/data/tests/test_base.py +14 -0
  43. sknetwork/data/tests/test_load.py +1 -1
  44. sknetwork/data/tests/test_parse.py +9 -12
  45. sknetwork/data/tests/test_test_graphs.py +1 -2
  46. sknetwork/data/toy_graphs.py +18 -18
  47. sknetwork/embedding/__init__.py +0 -1
  48. sknetwork/embedding/base.py +21 -20
  49. sknetwork/embedding/force_atlas.py +3 -2
  50. sknetwork/embedding/louvain_embedding.py +2 -2
  51. sknetwork/embedding/random_projection.py +5 -3
  52. sknetwork/embedding/spectral.py +0 -73
  53. sknetwork/embedding/tests/test_API.py +4 -28
  54. sknetwork/embedding/tests/test_louvain_embedding.py +4 -9
  55. sknetwork/embedding/tests/test_random_projection.py +2 -2
  56. sknetwork/embedding/tests/test_spectral.py +5 -8
  57. sknetwork/embedding/tests/test_svd.py +1 -1
  58. sknetwork/gnn/base.py +4 -4
  59. sknetwork/gnn/base_layer.py +3 -3
  60. sknetwork/gnn/gnn_classifier.py +45 -89
  61. sknetwork/gnn/layer.py +1 -1
  62. sknetwork/gnn/loss.py +1 -1
  63. sknetwork/gnn/optimizer.py +4 -3
  64. sknetwork/gnn/tests/test_base_layer.py +4 -4
  65. sknetwork/gnn/tests/test_gnn_classifier.py +12 -35
  66. sknetwork/gnn/utils.py +8 -8
  67. sknetwork/hierarchy/base.py +29 -2
  68. sknetwork/hierarchy/louvain_hierarchy.py +45 -41
  69. sknetwork/hierarchy/paris.cp38-win_amd64.pyd +0 -0
  70. sknetwork/hierarchy/paris.cpp +27371 -22844
  71. sknetwork/hierarchy/paris.pyx +7 -9
  72. sknetwork/hierarchy/postprocess.py +16 -16
  73. sknetwork/hierarchy/tests/test_API.py +1 -1
  74. sknetwork/hierarchy/tests/test_algos.py +5 -0
  75. sknetwork/hierarchy/tests/test_metrics.py +1 -1
  76. sknetwork/linalg/__init__.py +1 -1
  77. sknetwork/linalg/diteration.cp38-win_amd64.pyd +0 -0
  78. sknetwork/linalg/diteration.cpp +13474 -9454
  79. sknetwork/linalg/diteration.pyx +0 -2
  80. sknetwork/linalg/eig_solver.py +1 -1
  81. sknetwork/linalg/{normalization.py → normalizer.py} +18 -15
  82. sknetwork/linalg/operators.py +1 -1
  83. sknetwork/linalg/ppr_solver.py +1 -1
  84. sknetwork/linalg/push.cp38-win_amd64.pyd +0 -0
  85. sknetwork/linalg/push.cpp +23003 -18807
  86. sknetwork/linalg/push.pyx +0 -2
  87. sknetwork/linalg/svd_solver.py +1 -1
  88. sknetwork/linalg/tests/test_normalization.py +3 -7
  89. sknetwork/linalg/tests/test_operators.py +4 -8
  90. sknetwork/linalg/tests/test_ppr.py +1 -1
  91. sknetwork/linkpred/base.py +13 -2
  92. sknetwork/linkpred/nn.py +6 -6
  93. sknetwork/log.py +19 -0
  94. sknetwork/path/__init__.py +4 -3
  95. sknetwork/path/dag.py +54 -0
  96. sknetwork/path/distances.py +98 -0
  97. sknetwork/path/search.py +13 -47
  98. sknetwork/path/shortest_path.py +37 -162
  99. sknetwork/path/tests/test_dag.py +37 -0
  100. sknetwork/path/tests/test_distances.py +62 -0
  101. sknetwork/path/tests/test_search.py +26 -11
  102. sknetwork/path/tests/test_shortest_path.py +31 -36
  103. sknetwork/ranking/__init__.py +0 -1
  104. sknetwork/ranking/base.py +13 -8
  105. sknetwork/ranking/betweenness.cp38-win_amd64.pyd +0 -0
  106. sknetwork/ranking/betweenness.cpp +5709 -3017
  107. sknetwork/ranking/betweenness.pyx +0 -2
  108. sknetwork/ranking/closeness.py +7 -10
  109. sknetwork/ranking/pagerank.py +14 -14
  110. sknetwork/ranking/postprocess.py +12 -3
  111. sknetwork/ranking/tests/test_API.py +2 -4
  112. sknetwork/ranking/tests/test_betweenness.py +3 -3
  113. sknetwork/ranking/tests/test_closeness.py +3 -7
  114. sknetwork/ranking/tests/test_pagerank.py +11 -5
  115. sknetwork/ranking/tests/test_postprocess.py +5 -0
  116. sknetwork/regression/base.py +19 -2
  117. sknetwork/regression/diffusion.py +24 -10
  118. sknetwork/regression/tests/test_diffusion.py +8 -0
  119. sknetwork/test_base.py +35 -0
  120. sknetwork/test_log.py +15 -0
  121. sknetwork/topology/__init__.py +7 -8
  122. sknetwork/topology/cliques.cp38-win_amd64.pyd +0 -0
  123. sknetwork/topology/{kcliques.cpp → cliques.cpp} +23423 -20277
  124. sknetwork/topology/cliques.pyx +149 -0
  125. sknetwork/topology/core.cp38-win_amd64.pyd +0 -0
  126. sknetwork/topology/{kcore.cpp → core.cpp} +21637 -18762
  127. sknetwork/topology/core.pyx +90 -0
  128. sknetwork/topology/cycles.py +243 -0
  129. sknetwork/topology/minheap.cp38-win_amd64.pyd +0 -0
  130. sknetwork/{utils → topology}/minheap.cpp +19452 -15368
  131. sknetwork/{utils → topology}/minheap.pxd +1 -3
  132. sknetwork/{utils → topology}/minheap.pyx +1 -3
  133. sknetwork/topology/structure.py +3 -43
  134. sknetwork/topology/tests/test_cliques.py +11 -11
  135. sknetwork/topology/tests/test_core.py +19 -0
  136. sknetwork/topology/tests/test_cycles.py +65 -0
  137. sknetwork/topology/tests/test_structure.py +2 -16
  138. sknetwork/topology/tests/test_triangles.py +11 -15
  139. sknetwork/topology/tests/test_wl.py +72 -0
  140. sknetwork/topology/triangles.cp38-win_amd64.pyd +0 -0
  141. sknetwork/topology/triangles.cpp +5056 -2696
  142. sknetwork/topology/triangles.pyx +74 -89
  143. sknetwork/topology/weisfeiler_lehman.py +56 -86
  144. sknetwork/topology/weisfeiler_lehman_core.cp38-win_amd64.pyd +0 -0
  145. sknetwork/topology/weisfeiler_lehman_core.cpp +14727 -10622
  146. sknetwork/topology/weisfeiler_lehman_core.pyx +0 -2
  147. sknetwork/utils/__init__.py +1 -31
  148. sknetwork/utils/check.py +2 -2
  149. sknetwork/utils/format.py +5 -3
  150. sknetwork/utils/membership.py +2 -2
  151. sknetwork/utils/tests/test_check.py +3 -3
  152. sknetwork/utils/tests/test_format.py +3 -1
  153. sknetwork/utils/values.py +1 -1
  154. sknetwork/visualization/__init__.py +2 -2
  155. sknetwork/visualization/dendrograms.py +55 -7
  156. sknetwork/visualization/graphs.py +292 -72
  157. sknetwork/visualization/tests/test_dendrograms.py +9 -9
  158. sknetwork/visualization/tests/test_graphs.py +71 -62
  159. scikit_network-0.30.0.dist-info/RECORD +0 -227
  160. sknetwork/embedding/louvain_hierarchy.py +0 -142
  161. sknetwork/embedding/tests/test_louvain_hierarchy.py +0 -19
  162. sknetwork/path/metrics.py +0 -148
  163. sknetwork/path/tests/test_metrics.py +0 -29
  164. sknetwork/ranking/harmonic.py +0 -82
  165. sknetwork/topology/dag.py +0 -74
  166. sknetwork/topology/dag_core.cp38-win_amd64.pyd +0 -0
  167. sknetwork/topology/dag_core.cpp +0 -23350
  168. sknetwork/topology/dag_core.pyx +0 -38
  169. sknetwork/topology/kcliques.cp38-win_amd64.pyd +0 -0
  170. sknetwork/topology/kcliques.pyx +0 -193
  171. sknetwork/topology/kcore.cp38-win_amd64.pyd +0 -0
  172. sknetwork/topology/kcore.pyx +0 -120
  173. sknetwork/topology/tests/test_cores.py +0 -21
  174. sknetwork/topology/tests/test_dag.py +0 -26
  175. sknetwork/topology/tests/test_wl_coloring.py +0 -49
  176. sknetwork/topology/tests/test_wl_kernel.py +0 -31
  177. sknetwork/utils/base.py +0 -35
  178. sknetwork/utils/minheap.cp38-win_amd64.pyd +0 -0
  179. sknetwork/utils/simplex.py +0 -140
  180. sknetwork/utils/tests/test_base.py +0 -28
  181. sknetwork/utils/tests/test_bunch.py +0 -16
  182. sknetwork/utils/tests/test_projection_simplex.py +0 -33
  183. sknetwork/utils/tests/test_verbose.py +0 -15
  184. sknetwork/utils/verbose.py +0 -37
  185. {scikit_network-0.30.0.dist-info → scikit_network-0.32.1.dist-info}/LICENSE +0 -0
  186. {scikit_network-0.30.0.dist-info → scikit_network-0.32.1.dist-info}/top_level.txt +0 -0
  187. /sknetwork/{utils → data}/timeout.py +0 -0

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