scikit-learn-intelex 2024.5.0__py311-none-win_amd64.whl → 2024.6.0__py311-none-win_amd64.whl

{scikit_learn_intelex-2024.5.0.data → scikit_learn_intelex-2024.6.0.data}/data/Lib/site-packages/sklearnex/linear_model/linear.py

@@ -20,6 +20,7 @@ from abc import ABC
 import numpy as np
 from sklearn.exceptions import NotFittedError
 from sklearn.linear_model import LinearRegression as sklearn_LinearRegression
+from sklearn.metrics import r2_score
 
 from daal4py.sklearn._n_jobs_support import control_n_jobs
 from daal4py.sklearn._utils import sklearn_check_version
@@ -123,6 +124,20 @@ class LinearRegression(sklearn_LinearRegression):
             X,
         )
 
+    @wrap_output_data
+    def score(self, X, y, sample_weight=None):
+        return dispatch(
+            self,
+            "score",
+            {
+                "onedal": self.__class__._onedal_score,
+                "sklearn": sklearn_LinearRegression.score,
+            },
+            X,
+            y,
+            sample_weight=sample_weight,
+        )
+
     def _test_type_and_finiteness(self, X_in):
         X = X_in if isinstance(X_in, np.ndarray) else np.asarray(X_in)
 
@@ -193,22 +208,19 @@ class LinearRegression(sklearn_LinearRegression):
         return patching_status
 
     def _onedal_predict_supported(self, method_name, *data):
-        assert method_name == "predict"
-        assert len(data) == 1
-
         class_name = self.__class__.__name__
         patching_status = PatchingConditionsChain(
             f"sklearn.linear_model.{class_name}.predict"
         )
 
-        n_samples = _num_samples(*data)
+        n_samples = _num_samples(data[0])
         model_is_sparse = issparse(self.coef_) or (
             self.fit_intercept and issparse(self.intercept_)
         )
         dal_ready = patching_status.and_conditions(
             [
                 (n_samples > 0, "Number of samples is less than 1."),
-                (not issparse(*data), "Sparse input is not supported."),
+                (not issparse(data[0]), "Sparse input is not supported."),
                 (not model_is_sparse, "Sparse coefficients are not supported."),
             ]
         )
@@ -216,7 +228,7 @@ class LinearRegression(sklearn_LinearRegression):
             return patching_status
 
         patching_status.and_condition(
-            self._test_type_and_finiteness(*data), "Input X is not supported."
+            self._test_type_and_finiteness(data[0]), "Input X is not supported."
         )
 
         return patching_status
@@ -224,7 +236,7 @@ class LinearRegression(sklearn_LinearRegression):
     def _onedal_supported(self, method_name, *data):
         if method_name == "fit":
             return self._onedal_fit_supported(method_name, *data)
-        if method_name == "predict":
+        if method_name in ["predict", "score"]:
             return self._onedal_predict_supported(method_name, *data)
         raise RuntimeError(f"Unknown method {method_name} in {self.__class__.__name__}")
 
@@ -286,6 +298,11 @@ class LinearRegression(sklearn_LinearRegression):
         res = self._onedal_estimator.predict(X, queue=queue)
         return res
 
+    def _onedal_score(self, X, y, sample_weight=None, queue=None):
+        return r2_score(
+            y, self._onedal_predict(X, queue=queue), sample_weight=sample_weight
+        )
+
     def get_coef_(self):
         return self.coef_
 
@@ -314,3 +331,4 @@ class LinearRegression(sklearn_LinearRegression):
 
     fit.__doc__ = sklearn_LinearRegression.fit.__doc__
     predict.__doc__ = sklearn_LinearRegression.predict.__doc__
+    score.__doc__ = sklearn_LinearRegression.score.__doc__

{scikit_learn_intelex-2024.5.0.data → scikit_learn_intelex-2024.6.0.data}/data/Lib/site-packages/sklearnex/linear_model/logistic_regression.py

@@ -21,18 +21,6 @@ from daal4py.sklearn._utils import daal_check_version
 from daal4py.sklearn.linear_model.logistic_path import (
     LogisticRegression as LogisticRegression_daal4py,
 )
-from daal4py.sklearn.linear_model.logistic_path import daal4py_fit, daal4py_predict
-
-
-class BaseLogisticRegression(ABC):
-    def _save_attributes(self):
-        assert hasattr(self, "_onedal_estimator")
-        self.classes_ = self._onedal_estimator.classes_
-        self.coef_ = self._onedal_estimator.coef_
-        self.intercept_ = self._onedal_estimator.intercept_
-        self.n_features_in_ = self._onedal_estimator.n_features_in_
-        self.n_iter_ = self._onedal_estimator.n_iter_
-
 
 if daal_check_version((2024, "P", 1)):
     import numpy as np
@@ -44,6 +32,7 @@ if daal_check_version((2024, "P", 1)):
 
     from daal4py.sklearn._n_jobs_support import control_n_jobs
     from daal4py.sklearn._utils import sklearn_check_version
+    from daal4py.sklearn.linear_model.logistic_path import daal4py_fit, daal4py_predict
     from onedal.linear_model import LogisticRegression as onedal_LogisticRegression
     from onedal.utils import _num_samples
 
@@ -51,6 +40,15 @@ if daal_check_version((2024, "P", 1)):
     from .._utils import PatchingConditionsChain, get_patch_message
     from ..utils.validation import _assert_all_finite
 
+    class BaseLogisticRegression(ABC):
+        def _save_attributes(self):
+            assert hasattr(self, "_onedal_estimator")
+            self.classes_ = self._onedal_estimator.classes_
+            self.coef_ = self._onedal_estimator.coef_
+            self.intercept_ = self._onedal_estimator.intercept_
+            self.n_features_in_ = self._onedal_estimator.n_features_in_
+            self.n_iter_ = self._onedal_estimator.n_iter_
+
     @control_n_jobs(
         decorated_methods=[
             "fit",
@@ -82,7 +80,7 @@ if daal_check_version((2024, "P", 1)):
             random_state=None,
             solver="lbfgs",
             max_iter=100,
-            multi_class="auto",
+            multi_class="deprecated" if sklearn_check_version("1.5") else "auto",
             verbose=0,
             warm_start=False,
             n_jobs=None,
@@ -146,7 +144,7 @@ if daal_check_version((2024, "P", 1)):
                 self._check_feature_names(X, reset=False)
             return dispatch(
                 self,
-                "predict",
+                "predict_proba",
                 {
                     "onedal": self.__class__._onedal_predict_proba,
                     "sklearn": sklearn_LogisticRegression.predict_proba,
@@ -160,7 +158,7 @@ if daal_check_version((2024, "P", 1)):
                 self._check_feature_names(X, reset=False)
             return dispatch(
                 self,
-                "predict",
+                "predict_log_proba",
                 {
                     "onedal": self.__class__._onedal_predict_log_proba,
                     "sklearn": sklearn_LogisticRegression.predict_log_proba,

{scikit_learn_intelex-2024.5.0.data → scikit_learn_intelex-2024.6.0.data}/data/Lib/site-packages/sklearnex/linear_model/tests/test_incremental_linear.py

@@ -47,7 +47,7 @@ def test_sklearnex_fit_on_gold_data(dataframe, queue, fit_intercept, macro_block
 
     y_pred = inclin.predict(X_df)
 
-    tol = 2e-6 if dtype == np.float32 else 1e-7
+    tol = 2e-6 if y_pred.dtype == np.float32 else 1e-7
     assert_allclose(inclin.coef_, [1], atol=tol)
     if fit_intercept:
         assert_allclose(inclin.intercept_, [0], atol=tol)
@@ -82,15 +82,15 @@ def test_sklearnex_partial_fit_on_gold_data(
         )
         inclin.partial_fit(X_split_df, y_split_df)
 
+    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
+    y_pred = inclin.predict(X_df)
+
     assert inclin.n_features_in_ == 1
-    tol = 2e-6 if dtype == np.float32 else 1e-7
+    tol = 2e-6 if y_pred.dtype == np.float32 else 1e-7
     assert_allclose(inclin.coef_, [[1]], atol=tol)
     if fit_intercept:
         assert_allclose(inclin.intercept_, 3, atol=tol)
 
-    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
-    y_pred = inclin.predict(X_df)
-
     assert_allclose(_as_numpy(y_pred), y, atol=tol)
 
 
@@ -122,15 +122,15 @@ def test_sklearnex_partial_fit_multitarget_on_gold_data(
         )
         inclin.partial_fit(X_split_df, y_split_df)
 
+    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
+    y_pred = inclin.predict(X_df)
+
     assert inclin.n_features_in_ == 2
-    tol = 7e-6 if dtype == np.float32 else 1e-7
+    tol = 7e-6 if y_pred.dtype == np.float32 else 1e-7
     assert_allclose(inclin.coef_, [1.0, 2.0], atol=tol)
     if fit_intercept:
         assert_allclose(inclin.intercept_, 3.0, atol=tol)
 
-    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
-    y_pred = inclin.predict(X_df)
-
     assert_allclose(_as_numpy(y_pred), y, atol=tol)
 
 
@@ -181,7 +181,7 @@ def test_sklearnex_partial_fit_on_random_data(
         )
         inclin.partial_fit(X_split_df, y_split_df)
 
-    tol = 1e-4 if dtype == np.float32 else 1e-7
+    tol = 1e-4 if inclin.coef_.dtype == np.float32 else 1e-7
     assert_allclose(coef, inclin.coef_.T, atol=tol)
 
     if fit_intercept:

{scikit_learn_intelex-2024.5.0.data → scikit_learn_intelex-2024.6.0.data}/data/Lib/site-packages/sklearnex/linear_model/tests/test_linear.py

@@ -52,7 +52,7 @@ def test_sklearnex_import_linear(dataframe, queue, dtype, macro_block):
     assert "sklearnex" in linreg.__module__
     assert linreg.n_features_in_ == 2
 
-    tol = 1e-5 if dtype == np.float32 else 1e-7
+    tol = 1e-5 if _as_numpy(linreg.coef_).dtype == np.float32 else 1e-7
     assert_allclose(_as_numpy(linreg.intercept_), 3.0, rtol=tol)
     assert_allclose(_as_numpy(linreg.coef_), [1.0, 2.0], rtol=tol)
 
@@ -113,5 +113,5 @@ def test_sklearnex_reconstruct_model(dataframe, queue, dtype):
 
     y_pred = linreg.predict(X)
 
-    tol = 1e-5 if dtype == np.float32 else 1e-7
+    tol = 1e-5 if _as_numpy(y_pred).dtype == np.float32 else 1e-7
     assert_allclose(gtr, _as_numpy(y_pred), rtol=tol)

{scikit_learn_intelex-2024.5.0.data → scikit_learn_intelex-2024.6.0.data}/data/Lib/site-packages/sklearnex/neighbors/knn_regression.py

@@ -14,6 +14,7 @@
 # limitations under the License.
 # ==============================================================================
 
+from sklearn.metrics import r2_score
 from sklearn.neighbors._regression import (
     KNeighborsRegressor as sklearn_KNeighborsRegressor,
 )
@@ -117,6 +118,23 @@ class KNeighborsRegressor(sklearn_KNeighborsRegressor, KNeighborsDispatchingBase
             X,
         )
 
+    @wrap_output_data
+    def score(self, X, y, sample_weight=None):
+        check_is_fitted(self)
+        if sklearn_check_version("1.0"):
+            self._check_feature_names(X, reset=False)
+        return dispatch(
+            self,
+            "score",
+            {
+                "onedal": self.__class__._onedal_score,
+                "sklearn": sklearn_KNeighborsRegressor.score,
+            },
+            X,
+            y,
+            sample_weight=sample_weight,
+        )
+
     @wrap_output_data
     def kneighbors(self, X=None, n_neighbors=None, return_distance=True):
         check_is_fitted(self)
@@ -184,6 +202,11 @@ class KNeighborsRegressor(sklearn_KNeighborsRegressor, KNeighborsDispatchingBase
             X, n_neighbors, return_distance, queue=queue
         )
 
+    def _onedal_score(self, X, y, sample_weight=None, queue=None):
+        return r2_score(
+            y, self._onedal_predict(X, queue=queue), sample_weight=sample_weight
+        )
+
     def _save_attributes(self):
         self.n_features_in_ = self._onedal_estimator.n_features_in_
         self.n_samples_fit_ = self._onedal_estimator.n_samples_fit_
@@ -196,3 +219,4 @@ class KNeighborsRegressor(sklearn_KNeighborsRegressor, KNeighborsDispatchingBase
     predict.__doc__ = sklearn_KNeighborsRegressor.predict.__doc__
     kneighbors.__doc__ = sklearn_KNeighborsRegressor.kneighbors.__doc__
     radius_neighbors.__doc__ = sklearn_NearestNeighbors.radius_neighbors.__doc__
+    score.__doc__ = sklearn_KNeighborsRegressor.score.__doc__

{scikit_learn_intelex-2024.5.0.data → scikit_learn_intelex-2024.6.0.data}/data/Lib/site-packages/sklearnex/preview/__init__.py

@@ -14,4 +14,4 @@
 # limitations under the License.
 # ==============================================================================
 
-__all__ = ["cluster", "covariance"]
+__all__ = ["cluster", "covariance", "decomposition"]

scikit_learn_intelex-2024.6.0.data/data/Lib/site-packages/sklearnex/preview/decomposition/__init__.py

@@ -0,0 +1,19 @@
+# ===============================================================================
+# Copyright 2024 Intel Corporation
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ===============================================================================
+
+from .incremental_pca import IncrementalPCA
+
+__all__ = ["IncrementalPCA"]

scikit_learn_intelex-2024.6.0.data/data/Lib/site-packages/sklearnex/preview/decomposition/incremental_pca.py

@@ -0,0 +1,228 @@
+# ===============================================================================
+# Copyright 2024 Intel Corporation
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ===============================================================================
+
+import numpy as np
+from sklearn.decomposition import IncrementalPCA as sklearn_IncrementalPCA
+from sklearn.utils import check_array, gen_batches
+
+from daal4py.sklearn._n_jobs_support import control_n_jobs
+from daal4py.sklearn._utils import sklearn_check_version
+from onedal.decomposition import IncrementalPCA as onedal_IncrementalPCA
+
+from ..._device_offload import dispatch, wrap_output_data
+from ..._utils import PatchingConditionsChain
+
+
+@control_n_jobs(
+    decorated_methods=["fit", "partial_fit", "transform", "_onedal_finalize_fit"]
+)
+class IncrementalPCA(sklearn_IncrementalPCA):
+
+    def __init__(self, n_components=None, *, whiten=False, copy=True, batch_size=None):
+        super().__init__(
+            n_components=n_components, whiten=whiten, copy=copy, batch_size=batch_size
+        )
+        self._need_to_finalize = False
+        self._need_to_finalize_attrs = {
+            "mean_",
+            "explained_variance_",
+            "explained_variance_ratio_",
+            "n_components_",
+            "components_",
+            "noise_variance_",
+            "singular_values_",
+            "var_",
+        }
+
+    _onedal_incremental_pca = staticmethod(onedal_IncrementalPCA)
+
+    def _onedal_transform(self, X, queue=None):
+        assert hasattr(self, "_onedal_estimator")
+        if self._need_to_finalize:
+            self._onedal_finalize_fit()
+        X = check_array(X, dtype=[np.float64, np.float32])
+        return self._onedal_estimator.predict(X, queue)
+
+    def _onedal_fit_transform(self, X, queue=None):
+        self._onedal_fit(X, queue)
+        return self._onedal_transform(X, queue)
+
+    def _onedal_partial_fit(self, X, check_input=True, queue=None):
+        first_pass = not hasattr(self, "components_")
+
+        if check_input:
+            if sklearn_check_version("1.0"):
+                X = self._validate_data(
+                    X, dtype=[np.float64, np.float32], reset=first_pass
+                )
+            else:
+                X = check_array(
+                    X,
+                    dtype=[np.float64, np.float32],
+                    copy=self.copy,
+                )
+
+        n_samples, n_features = X.shape
+
+        if self.n_components is None:
+            if not hasattr(self, "components_"):
+                self.n_components_ = min(n_samples, n_features)
+            else:
+                self.n_components_ = self.components_.shape[0]
+        elif not self.n_components <= n_features:
+            raise ValueError(
+                "n_components=%r invalid for n_features=%d, need "
+                "more rows than columns for IncrementalPCA "
+                "processing" % (self.n_components, n_features)
+            )
+        elif not self.n_components <= n_samples:
+            raise ValueError(
+                "n_components=%r must be less or equal to "
+                "the batch number of samples "
+                "%d." % (self.n_components, n_samples)
+            )
+        else:
+            self.n_components_ = self.n_components
+
+        if not hasattr(self, "n_samples_seen_"):
+            self.n_samples_seen_ = n_samples
+        else:
+            self.n_samples_seen_ += n_samples
+
+        onedal_params = {"n_components": self.n_components_, "whiten": self.whiten}
+
+        if not hasattr(self, "_onedal_estimator"):
+            self._onedal_estimator = self._onedal_incremental_pca(**onedal_params)
+        self._onedal_estimator.partial_fit(X, queue)
+        self._need_to_finalize = True
+
+    def _onedal_finalize_fit(self):
+        assert hasattr(self, "_onedal_estimator")
+        self._onedal_estimator.finalize_fit()
+        self._need_to_finalize = False
+
+    def _onedal_fit(self, X, queue=None):
+        if sklearn_check_version("1.2"):
+            self._validate_params()
+
+        if sklearn_check_version("1.0"):
+            X = self._validate_data(X, dtype=[np.float64, np.float32], copy=self.copy)
+        else:
+            X = check_array(
+                X,
+                dtype=[np.float64, np.float32],
+                copy=self.copy,
+            )
+
+        n_samples, n_features = X.shape
+
+        if self.batch_size is None:
+            self.batch_size_ = 5 * n_features
+        else:
+            self.batch_size_ = self.batch_size
+
+        self.n_samples_seen_ = 0
+        if hasattr(self, "_onedal_estimator"):
+            self._onedal_estimator._reset()
+
+        for batch in gen_batches(n_samples, self.batch_size_):
+            X_batch = X[batch]
+            self._onedal_partial_fit(X_batch, queue=queue)
+
+        self._onedal_finalize_fit()
+
+        return self
+
+    def _onedal_supported(self, method_name, *data):
+        patching_status = PatchingConditionsChain(
+            f"sklearn.decomposition.{self.__class__.__name__}.{method_name}"
+        )
+        return patching_status
+
+    _onedal_cpu_supported = _onedal_supported
+    _onedal_gpu_supported = _onedal_supported
+
+    def __getattr__(self, attr):
+        if attr in self._need_to_finalize_attrs:
+            if hasattr(self, "_onedal_estimator"):
+                if self._need_to_finalize:
+                    self._onedal_finalize_fit()
+                return getattr(self._onedal_estimator, attr)
+            else:
+                raise AttributeError(
+                    f"'{self.__class__.__name__}' object has no attribute '{attr}'"
+                )
+        if attr in self.__dict__:
+            return self.__dict__[attr]
+
+        raise AttributeError(
+            f"'{self.__class__.__name__}' object has no attribute '{attr}'"
+        )
+
+    def partial_fit(self, X, y=None, check_input=True):
+        dispatch(
+            self,
+            "partial_fit",
+            {
+                "onedal": self.__class__._onedal_partial_fit,
+                "sklearn": sklearn_IncrementalPCA.partial_fit,
+            },
+            X,
+            check_input=check_input,
+        )
+        return self
+
+    def fit(self, X, y=None):
+        dispatch(
+            self,
+            "fit",
+            {
+                "onedal": self.__class__._onedal_fit,
+                "sklearn": sklearn_IncrementalPCA.fit,
+            },
+            X,
+        )
+        return self
+
+    @wrap_output_data
+    def transform(self, X):
+        return dispatch(
+            self,
+            "transform",
+            {
+                "onedal": self.__class__._onedal_transform,
+                "sklearn": sklearn_IncrementalPCA.transform,
+            },
+            X,
+        )
+
+    @wrap_output_data
+    def fit_transform(self, X, y=None, **fit_params):
+        return dispatch(
+            self,
+            "fit_transform",
+            {
+                "onedal": self.__class__._onedal_fit_transform,
+                "sklearn": sklearn_IncrementalPCA.fit_transform,
+            },
+            X,
+        )
+
+    __doc__ = sklearn_IncrementalPCA.__doc__
+    fit.__doc__ = sklearn_IncrementalPCA.fit.__doc__
+    fit_transform.__doc__ = sklearn_IncrementalPCA.fit_transform.__doc__
+    transform.__doc__ = sklearn_IncrementalPCA.transform.__doc__
+    partial_fit.__doc__ = sklearn_IncrementalPCA.partial_fit.__doc__