scikit-learn-intelex 2024.5.0__py310-none-win_amd64.whl → 2024.6.0__py310-none-win_amd64.whl

scikit_learn_intelex-2024.6.0.data/data/Lib/site-packages/sklearnex/tests/test_run_to_run_stability.py

@@ -0,0 +1,283 @@
+# ===============================================================================
+# Copyright 2020 Intel Corporation
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ===============================================================================
+
+import random
+from collections.abc import Iterable
+from functools import partial
+from numbers import Number
+
+import numpy as np
+import pytest
+from _utils import (
+    PATCHED_MODELS,
+    SPECIAL_INSTANCES,
+    _sklearn_clone_dict,
+    gen_dataset,
+    gen_models_info,
+)
+from numpy.testing import assert_allclose
+from scipy import sparse
+from sklearn.datasets import (
+    load_breast_cancer,
+    load_diabetes,
+    load_iris,
+    make_classification,
+    make_regression,
+)
+
+import daal4py as d4p
+from onedal.tests.utils._dataframes_support import _as_numpy, get_dataframes_and_queues
+from sklearnex.cluster import DBSCAN, KMeans
+from sklearnex.decomposition import PCA
+from sklearnex.metrics import pairwise_distances, roc_auc_score
+from sklearnex.model_selection import train_test_split
+from sklearnex.neighbors import (
+    KNeighborsClassifier,
+    KNeighborsRegressor,
+    NearestNeighbors,
+)
+from sklearnex.svm import SVC
+
+# to reproduce errors even in CI
+d4p.daalinit(nthreads=100)
+
+_dataset_dict = {
+    "classification": [
+        partial(load_iris, return_X_y=True),
+        partial(load_breast_cancer, return_X_y=True),
+    ],
+    "regression": [
+        partial(load_diabetes, return_X_y=True),
+        partial(
+            make_regression, n_samples=500, n_features=10, noise=64.0, random_state=42
+        ),
+    ],
+}
+
+
+def eval_method(X, y, est, method):
+    res = []
+    est.fit(X, y)
+
+    if method:
+        if method != "score":
+            res = getattr(est, method)(X)
+        else:
+            res = est.score(X, y)
+
+    if not isinstance(res, Iterable):
+        res = [res]
+
+    # if estimator follows sklearn design rules, then set attributes should have a
+    # trailing underscore
+    attributes = [
+        i
+        for i in dir(est)
+        if hasattr(est, i) and not i.startswith("_") and i.endswith("_")
+    ]
+    results = [getattr(est, i) for i in attributes] + [_as_numpy(i) for i in res]
+    attributes += [method for i in res]
+    return results, attributes
+
+
+def _run_test(estimator, method, datasets):
+
+    for X, y in datasets:
+        baseline, attributes = eval_method(X, y, estimator, method)
+
+        for i in range(10):
+            res, _ = eval_method(X, y, estimator, method)
+
+            for r, b, n in zip(res, baseline, attributes):
+                if (
+                    isinstance(b, Number)
+                    or hasattr(b, "__array__")
+                    or hasattr(b, "__array_namespace__")
+                    or hasattr(b, "__sycl_usm_ndarray__")
+                ):
+                    assert_allclose(
+                        r, b, rtol=0.0, atol=0.0, err_msg=str(n + " is incorrect")
+                    )
+
+
+SPARSE_INSTANCES = _sklearn_clone_dict(
+    {
+        str(i): i
+        for i in [
+            SVC(),
+            KMeans(),
+            KMeans(init="random"),
+        ]
+    }
+)
+
+STABILITY_INSTANCES = _sklearn_clone_dict(
+    {
+        str(i): i
+        for i in [
+            KNeighborsClassifier(algorithm="brute", weights="distance"),
+            KNeighborsClassifier(algorithm="kd_tree", weights="distance"),
+            KNeighborsClassifier(algorithm="kd_tree"),
+            KNeighborsRegressor(algorithm="brute", weights="distance"),
+            KNeighborsRegressor(algorithm="kd_tree", weights="distance"),
+            KNeighborsRegressor(algorithm="kd_tree"),
+            NearestNeighbors(algorithm="kd_tree"),
+            DBSCAN(algorithm="brute"),
+            PCA(n_components=0.5, svd_solver="covariance_eigh"),
+            KMeans(init="random"),
+        ]
+    }
+)
+
+
+@pytest.mark.parametrize("dataframe, queue", get_dataframes_and_queues("numpy"))
+@pytest.mark.parametrize("estimator, method", gen_models_info(PATCHED_MODELS))
+def test_standard_estimator_stability(estimator, method, dataframe, queue):
+    if estimator in ["LogisticRegression", "TSNE"]:
+        pytest.skip(f"stability not guaranteed for {estimator}")
+    if estimator in ["KMeans", "PCA"] and method == "score" and queue == None:
+        pytest.skip(f"variation observed in {estimator}.score")
+
+    est = PATCHED_MODELS[estimator]()
+
+    if method and not hasattr(est, method):
+        pytest.skip(f"sklearn available_if prevents testing {estimator}.{method}")
+
+    params = est.get_params().copy()
+    if "random_state" in params:
+        params["random_state"] = 0
+        est.set_params(**params)
+
+    datasets = gen_dataset(est, datasets=_dataset_dict, queue=queue, target_df=dataframe)
+    _run_test(est, method, datasets)
+
+
+@pytest.mark.allow_sklearn_fallback
+@pytest.mark.parametrize("dataframe, queue", get_dataframes_and_queues("numpy"))
+@pytest.mark.parametrize("estimator, method", gen_models_info(SPECIAL_INSTANCES))
+def test_special_estimator_stability(estimator, method, dataframe, queue):
+    if queue is None and estimator in ["LogisticRegression(solver='newton-cg')"]:
+        pytest.skip(f"stability not guaranteed for {estimator}")
+    if "KMeans" in estimator and method == "score" and queue == None:
+        pytest.skip(f"variation observed in KMeans.score")
+
+    est = SPECIAL_INSTANCES[estimator]
+
+    if method and not hasattr(est, method):
+        pytest.skip(f"sklearn available_if prevents testing {estimator}.{method}")
+
+    params = est.get_params().copy()
+    if "random_state" in params:
+        params["random_state"] = 0
+        est.set_params(**params)
+
+    datasets = gen_dataset(est, datasets=_dataset_dict, queue=queue, target_df=dataframe)
+    _run_test(est, method, datasets)
+
+
+@pytest.mark.parametrize("dataframe, queue", get_dataframes_and_queues("numpy"))
+@pytest.mark.parametrize("estimator, method", gen_models_info(SPARSE_INSTANCES))
+def test_sparse_estimator_stability(estimator, method, dataframe, queue):
+    if "KMeans" in estimator and method == "score" and queue == None:
+        pytest.skip(f"variation observed in KMeans.score")
+
+    est = SPARSE_INSTANCES[estimator]
+
+    if method and not hasattr(est, method):
+        pytest.skip(f"sklearn available_if prevents testing {estimator}.{method}")
+
+    params = est.get_params().copy()
+    if "random_state" in params:
+        params["random_state"] = 0
+        est.set_params(**params)
+
+    datasets = gen_dataset(
+        est, sparse=True, datasets=_dataset_dict, queue=queue, target_df=dataframe
+    )
+    _run_test(est, method, datasets)
+
+
+@pytest.mark.parametrize("dataframe, queue", get_dataframes_and_queues("numpy"))
+@pytest.mark.parametrize("estimator, method", gen_models_info(STABILITY_INSTANCES))
+def test_other_estimator_stability(estimator, method, dataframe, queue):
+    if "KMeans" in estimator and method == "score" and queue == None:
+        pytest.skip(f"variation observed in KMeans.score")
+
+    est = STABILITY_INSTANCES[estimator]
+
+    if method and not hasattr(est, method):
+        pytest.skip(f"sklearn available_if prevents testing {estimator}.{method}")
+
+    params = est.get_params().copy()
+    if "random_state" in params:
+        params["random_state"] = 0
+        est.set_params(**params)
+
+    datasets = gen_dataset(est, datasets=_dataset_dict, queue=queue, target_df=dataframe)
+    _run_test(est, method, datasets)
+
+
+@pytest.mark.parametrize("features", range(5, 10))
+def test_train_test_split(features):
+    X, y = make_classification(
+        n_samples=4000,
+        n_features=features,
+        n_informative=features,
+        n_redundant=0,
+        n_clusters_per_class=8,
+        random_state=0,
+    )
+    (
+        baseline_X_train,
+        baseline_X_test,
+        baseline_y_train,
+        baseline_y_test,
+    ) = train_test_split(X, y, test_size=0.33, random_state=0)
+    baseline = [baseline_X_train, baseline_X_test, baseline_y_train, baseline_y_test]
+    for _ in range(10):
+        X_train, X_test, y_train, y_test = train_test_split(
+            X, y, test_size=0.33, random_state=0
+        )
+        res = [X_train, X_test, y_train, y_test]
+        for a, b in zip(res, baseline):
+            np.testing.assert_allclose(
+                a, b, rtol=0.0, atol=0.0, err_msg=str("train_test_split is incorrect")
+            )
+
+
+@pytest.mark.parametrize("metric", ["cosine", "correlation"])
+def test_pairwise_distances(metric):
+    X = np.random.rand(1000)
+    X = np.array(X, dtype=np.float64)
+    baseline = pairwise_distances(X.reshape(1, -1), metric=metric)
+    for _ in range(5):
+        res = pairwise_distances(X.reshape(1, -1), metric=metric)
+        for a, b in zip(res, baseline):
+            np.testing.assert_allclose(
+                a, b, rtol=0.0, atol=0.0, err_msg=str("pairwise_distances is incorrect")
+            )
+
+
+@pytest.mark.parametrize("array_size", [100, 1000, 10000])
+def test_roc_auc(array_size):
+    a = [random.randint(0, 1) for i in range(array_size)]
+    b = [random.randint(0, 1) for i in range(array_size)]
+    baseline = roc_auc_score(a, b)
+    for _ in range(5):
+        res = roc_auc_score(a, b)
+        np.testing.assert_allclose(
+            baseline, res, rtol=0.0, atol=0.0, err_msg=str("roc_auc is incorrect")
+        )

{scikit_learn_intelex-2024.5.0.data → scikit_learn_intelex-2024.6.0.data}/data/Lib/site-packages/sklearnex/utils/_namespace.py

@@ -94,4 +94,4 @@ def get_namespace(*arrays):
     elif sklearn_check_version("1.2"):
         return sklearn_get_namespace(*arrays)
     else:
-        return np, True
+        return np, False

{scikit_learn_intelex-2024.5.0.dist-info → scikit_learn_intelex-2024.6.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scikit-learn-intelex
-Version: 2024.5.0
+Version: 2024.6.0
 Summary: Intel(R) Extension for Scikit-learn is a seamless way to speed up your Scikit-learn application.
 Home-page: https://github.com/intel/scikit-learn-intelex
 Author: Intel Corporation
@@ -11,6 +11,7 @@ Project-URL: Bug Tracker, https://github.com/intel/scikit-learn-intelex/issues
 Project-URL: Documentation, https://intel.github.io/scikit-learn-intelex/
 Project-URL: Source Code, https://github.com/intel/scikit-learn-intelex
 Keywords: machine learning,scikit-learn,data science,data analytics
+Platform: UNKNOWN
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Environment :: Console
 Classifier: Intended Audience :: Developers
@@ -30,7 +31,7 @@ Classifier: Topic :: Software Development
 Requires-Python: >=3.7
 Description-Content-Type: text/markdown
 License-File: LICENSE.txt
-Requires-Dist: daal4py ==2024.5.0
+Requires-Dist: daal4py ==2024.6.0
 Requires-Dist: scikit-learn >=0.22
 
 
@@ -225,3 +226,5 @@ For example, for DBSCAN you get one of these print statements depending on which
 - `SKLEARNEX INFO: sklearn.cluster.DBSCAN.fit: fallback to original Scikit-learn`
 
 [Read more in the documentation](https://intel.github.io/scikit-learn-intelex/).
+
+

scikit_learn_intelex-2024.6.0.dist-info/RECORD

@@ -0,0 +1,108 @@
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{scikit_learn_intelex-2024.5.0.dist-info → scikit_learn_intelex-2024.6.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.2)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py310-none-win_amd64
 

scikit_learn_intelex-2024.5.0.data/data/Lib/site-packages/sklearnex/svm/_common.py

@@ -1,185 +0,0 @@
-# ==============================================================================
-# Copyright 2021 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ==============================================================================
-
-from abc import ABC
-
-import numpy as np
-from sklearn.calibration import CalibratedClassifierCV
-from sklearn.model_selection import StratifiedKFold
-from sklearn.preprocessing import LabelEncoder
-
-from daal4py.sklearn._utils import sklearn_check_version
-from onedal.utils import _column_or_1d
-
-from .._utils import PatchingConditionsChain
-
-
-def get_dual_coef(self):
-    return self.dual_coef_
-
-
-def set_dual_coef(self, value):
-    self.dual_coef_ = value
-    if hasattr(self, "_onedal_estimator"):
-        self._onedal_estimator.dual_coef_ = value
-        if not self._is_in_fit:
-            del self._onedal_estimator._onedal_model
-
-
-def get_intercept(self):
-    return self._intercept_
-
-
-def set_intercept(self, value):
-    self._intercept_ = value
-    if hasattr(self, "_onedal_estimator"):
-        self._onedal_estimator.intercept_ = value
-        if not self._is_in_fit:
-            del self._onedal_estimator._onedal_model
-
-
-class BaseSVM(ABC):
-    def _onedal_gpu_supported(self, method_name, *data):
-        patching_status = PatchingConditionsChain(f"sklearn.{method_name}")
-        patching_status.and_conditions([(False, "GPU offloading is not supported.")])
-        return patching_status
-
-    def _onedal_cpu_supported(self, method_name, *data):
-        class_name = self.__class__.__name__
-        patching_status = PatchingConditionsChain(
-            f"sklearn.svm.{class_name}.{method_name}"
-        )
-        if method_name == "fit":
-            patching_status.and_conditions(
-                [
-                    (
-                        self.kernel in ["linear", "rbf", "poly", "sigmoid"],
-                        f'Kernel is "{self.kernel}" while '
-                        '"linear", "rbf", "poly" and "sigmoid" are only supported.',
-                    )
-                ]
-            )
-            return patching_status
-        inference_methods = (
-            ["predict"]
-            if class_name.endswith("R")
-            else ["predict", "predict_proba", "decision_function", "score"]
-        )
-        if method_name in inference_methods:
-            patching_status.and_conditions(
-                [(hasattr(self, "_onedal_estimator"), "oneDAL model was not trained.")]
-            )
-            return patching_status
-        raise RuntimeError(f"Unknown method {method_name} in {class_name}")
-
-
-class BaseSVC(BaseSVM):
-    def _compute_balanced_class_weight(self, y):
-        y_ = _column_or_1d(y)
-        classes, _ = np.unique(y_, return_inverse=True)
-
-        le = LabelEncoder()
-        y_ind = le.fit_transform(y_)
-        if not all(np.in1d(classes, le.classes_)):
-            raise ValueError("classes should have valid labels that are in y")
-
-        recip_freq = len(y_) / (len(le.classes_) * np.bincount(y_ind).astype(np.float64))
-        return recip_freq[le.transform(classes)]
-
-    def _fit_proba(self, X, y, sample_weight=None, queue=None):
-        params = self.get_params()
-        params["probability"] = False
-        params["decision_function_shape"] = "ovr"
-        clf_base = self.__class__(**params)
-
-        try:
-            n_splits = 5
-            n_jobs = n_splits if queue is None or queue.sycl_device.is_cpu else 1
-            cv = StratifiedKFold(
-                n_splits=n_splits, shuffle=True, random_state=self.random_state
-            )
-            self.clf_prob = CalibratedClassifierCV(
-                clf_base, ensemble=False, cv=cv, method="sigmoid", n_jobs=n_jobs
-            )
-            self.clf_prob.fit(X, y, sample_weight)
-        except ValueError:
-            clf_base = clf_base.fit(X, y, sample_weight)
-            self.clf_prob = CalibratedClassifierCV(
-                clf_base, cv="prefit", method="sigmoid"
-            )
-            self.clf_prob.fit(X, y, sample_weight)
-
-    def _save_attributes(self):
-        self.support_vectors_ = self._onedal_estimator.support_vectors_
-        self.n_features_in_ = self._onedal_estimator.n_features_in_
-        self.fit_status_ = 0
-        self.dual_coef_ = self._onedal_estimator.dual_coef_
-        self.shape_fit_ = self._onedal_estimator.class_weight_
-        self.classes_ = self._onedal_estimator.classes_
-        self.class_weight_ = self._onedal_estimator.class_weight_
-        self.support_ = self._onedal_estimator.support_
-
-        self._intercept_ = self._onedal_estimator.intercept_
-        self._n_support = self._onedal_estimator._n_support
-        self._sparse = False
-        self._gamma = self._onedal_estimator._gamma
-        if self.probability:
-            length = int(len(self.classes_) * (len(self.classes_) - 1) / 2)
-            self._probA = np.zeros(length)
-            self._probB = np.zeros(length)
-        else:
-            self._probA = np.empty(0)
-            self._probB = np.empty(0)
-
-        self._dual_coef_ = property(get_dual_coef, set_dual_coef)
-        self.intercept_ = property(get_intercept, set_intercept)
-
-        self._is_in_fit = True
-        self._dual_coef_ = self.dual_coef_
-        self.intercept_ = self._intercept_
-        self._is_in_fit = False
-
-        if sklearn_check_version("1.1"):
-            length = int(len(self.classes_) * (len(self.classes_) - 1) / 2)
-            self.n_iter_ = np.full((length,), self._onedal_estimator.n_iter_)
-
-
-class BaseSVR(BaseSVM):
-    def _save_attributes(self):
-        self.support_vectors_ = self._onedal_estimator.support_vectors_
-        self.n_features_in_ = self._onedal_estimator.n_features_in_
-        self.fit_status_ = 0
-        self.dual_coef_ = self._onedal_estimator.dual_coef_
-        self.shape_fit_ = self._onedal_estimator.shape_fit_
-        self.support_ = self._onedal_estimator.support_
-
-        self._intercept_ = self._onedal_estimator.intercept_
-        self._n_support = [self.support_vectors_.shape[0]]
-        self._sparse = False
-        self._gamma = self._onedal_estimator._gamma
-        self._probA = None
-        self._probB = None
-
-        self._dual_coef_ = property(get_dual_coef, set_dual_coef)
-        self.intercept_ = property(get_intercept, set_intercept)
-
-        self._is_in_fit = True
-        self._dual_coef_ = self.dual_coef_
-        self.intercept_ = self._intercept_
-        self._is_in_fit = False
-
-        if sklearn_check_version("1.1"):
-            self.n_iter_ = self._onedal_estimator.n_iter_