scikit-learn-intelex 2024.2.0__py39-none-win_amd64.whl → 2025.1.0__py39-none-win_amd64.whl

scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/covariance/incremental_covariance.py

@@ -1,130 +0,0 @@
-# ===============================================================================
-# Copyright 2024 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-import numpy as np
-from sklearn.utils import check_array, gen_batches
-
-from daal4py.sklearn._n_jobs_support import control_n_jobs
-from onedal._device_offload import support_usm_ndarray
-from onedal.covariance import (
-    IncrementalEmpiricalCovariance as onedal_IncrementalEmpiricalCovariance,
-)
-
-
-@control_n_jobs(decorated_methods=["partial_fit"])
-class IncrementalEmpiricalCovariance:
-    """
-    Incremental estimator for covariance.
-    Allows to compute empirical covariance estimated by maximum
-    likelihood method if data are splitted into batches.
-
-    Parameters
-    ----------
-    batch_size : int, default=None
-        The number of samples to use for each batch. Only used when calling
-        ``fit``. If ``batch_size`` is ``None``, then ``batch_size``
-        is inferred from the data and set to ``5 * n_features``, to provide a
-        balance between approximation accuracy and memory consumption.
-
-    Attributes
-    ----------
-    location_ : ndarray of shape (n_features,)
-        Estimated location, i.e. the estimated mean.
-
-    covariance_ : ndarray of shape (n_features, n_features)
-        Estimated covariance matrix
-    """
-
-    _onedal_incremental_covariance = staticmethod(onedal_IncrementalEmpiricalCovariance)
-
-    def __init__(self, batch_size=None):
-        self._need_to_finalize = False  # If True then finalize compute should
-        #      be called to obtain covariance_ or location_ from partial compute data
-        self.batch_size = batch_size
-
-    def _onedal_finalize_fit(self):
-        assert hasattr(self, "_onedal_estimator")
-        self._onedal_estimator.finalize_fit()
-        self._need_to_finalize = False
-
-    def _onedal_partial_fit(self, X, queue):
-        onedal_params = {
-            "method": "dense",
-            "bias": True,
-        }
-        if not hasattr(self, "_onedal_estimator"):
-            self._onedal_estimator = self._onedal_incremental_covariance(**onedal_params)
-        self._onedal_estimator.partial_fit(X, queue)
-        self._need_to_finalize = True
-
-    @property
-    def covariance_(self):
-        if self._need_to_finalize:
-            self._onedal_finalize_fit()
-        return self._onedal_estimator.covariance_
-
-    @property
-    def location_(self):
-        if self._need_to_finalize:
-            self._onedal_finalize_fit()
-        return self._onedal_estimator.location_
-
-    @support_usm_ndarray()
-    def partial_fit(self, X, queue=None):
-        """
-        Incremental fit with X. All of X is processed as a single batch.
-
-        Parameters
-        ----------
-        X : array-like of shape (n_samples, n_features)
-            Training data, where `n_samples` is the number of samples and
-            `n_features` is the number of features.
-
-        Returns
-        -------
-        self : object
-            Returns the instance itself.
-        """
-        X = check_array(X, dtype=[np.float64, np.float32])
-        self._onedal_partial_fit(X, queue)
-        return self
-
-    def fit(self, X, queue=None):
-        """
-        Fit the model with X, using minibatches of size batch_size.
-
-        Parameters
-        ----------
-        X : array-like of shape (n_samples, n_features)
-            Training data, where `n_samples` is the number of samples and
-            `n_features` is the number of features.
-
-        Returns
-        -------
-        self : object
-            Returns the instance itself.
-        """
-        n_samples, n_features = X.shape
-        if self.batch_size is None:
-            batch_size_ = 5 * n_features
-        else:
-            batch_size_ = self.batch_size
-        for batch in gen_batches(n_samples, batch_size_):
-            X_batch = X[batch]
-            self.partial_fit(X_batch, queue=queue)
-
-        self._onedal_finalize_fit()
-        return self

scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/decomposition/pca.py

@@ -1,17 +0,0 @@
-# ===============================================================================
-# Copyright 2021 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-from daal4py.sklearn.decomposition import PCA

scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/decomposition/tests/test_pca.py

@@ -1,27 +0,0 @@
-# ===============================================================================
-# Copyright 2023 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-import numpy as np
-from numpy.testing import assert_allclose
-
-
-def test_sklearnex_import():
-    from sklearnex.decomposition import PCA
-
-    X = np.array([[-1, -1], [-2, -1], [-3, -2], [1, 1], [2, 1], [3, 2]])
-    pca = PCA(n_components=2, svd_solver="full").fit(X)
-    assert "daal4py" in pca.__module__
-    assert_allclose(pca.singular_values_, [6.30061232, 0.54980396])

scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/linear_model/linear.py

@@ -1,381 +0,0 @@
-# ===============================================================================
-# Copyright 2023 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-import logging
-from abc import ABC
-
-from daal4py.sklearn._utils import daal_check_version
-
-
-def get_coef(self):
-    return self._coef_
-
-
-def set_coef(self, value):
-    self._coef_ = value
-    if hasattr(self, "_onedal_estimator"):
-        self._onedal_estimator.coef_ = value
-        if not self._is_in_fit:
-            del self._onedal_estimator._onedal_model
-
-
-def get_intercept(self):
-    return self._intercept_
-
-
-def set_intercept(self, value):
-    self._intercept_ = value
-    if hasattr(self, "_onedal_estimator"):
-        self._onedal_estimator.intercept_ = value
-        if not self._is_in_fit:
-            del self._onedal_estimator._onedal_model
-
-
-class BaseLinearRegression(ABC):
-    def _save_attributes(self):
-        self.n_features_in_ = self._onedal_estimator.n_features_in_
-        self.fit_status_ = 0
-        self._coef_ = self._onedal_estimator.coef_
-        self._intercept_ = self._onedal_estimator.intercept_
-        self._sparse = False
-
-        self.coef_ = property(get_coef, set_coef)
-        self.intercept_ = property(get_intercept, set_intercept)
-
-        self._is_in_fit = True
-        self.coef_ = self._coef_
-        self.intercept_ = self._intercept_
-        self._is_in_fit = False
-
-
-if daal_check_version((2023, "P", 100)):
-    import numpy as np
-    from sklearn.linear_model import LinearRegression as sklearn_LinearRegression
-
-    from daal4py.sklearn._n_jobs_support import control_n_jobs
-    from daal4py.sklearn._utils import get_dtype, make2d, sklearn_check_version
-
-    from .._device_offload import dispatch, wrap_output_data
-    from .._utils import (
-        PatchingConditionsChain,
-        get_patch_message,
-        register_hyperparameters,
-    )
-    from ..utils.validation import _assert_all_finite
-
-    if sklearn_check_version("1.0") and not sklearn_check_version("1.2"):
-        from sklearn.linear_model._base import _deprecate_normalize
-
-    from scipy.sparse import issparse
-    from sklearn.exceptions import NotFittedError
-    from sklearn.utils.validation import _deprecate_positional_args, check_X_y
-
-    from onedal.common.hyperparameters import get_hyperparameters
-    from onedal.linear_model import LinearRegression as onedal_LinearRegression
-    from onedal.utils import _num_features, _num_samples
-
-    @register_hyperparameters({"fit": get_hyperparameters("linear_regression", "train")})
-    @control_n_jobs(decorated_methods=["fit", "predict"])
-    class LinearRegression(sklearn_LinearRegression, BaseLinearRegression):
-        __doc__ = sklearn_LinearRegression.__doc__
-        intercept_, coef_ = None, None
-
-        if sklearn_check_version("1.2"):
-            _parameter_constraints: dict = {
-                **sklearn_LinearRegression._parameter_constraints
-            }
-
-            def __init__(
-                self,
-                fit_intercept=True,
-                copy_X=True,
-                n_jobs=None,
-                positive=False,
-            ):
-                super().__init__(
-                    fit_intercept=fit_intercept,
-                    copy_X=copy_X,
-                    n_jobs=n_jobs,
-                    positive=positive,
-                )
-
-        elif sklearn_check_version("0.24"):
-
-            def __init__(
-                self,
-                fit_intercept=True,
-                normalize="deprecated" if sklearn_check_version("1.0") else False,
-                copy_X=True,
-                n_jobs=None,
-                positive=False,
-            ):
-                super().__init__(
-                    fit_intercept=fit_intercept,
-                    normalize=normalize,
-                    copy_X=copy_X,
-                    n_jobs=n_jobs,
-                    positive=positive,
-                )
-
-        else:
-
-            def __init__(
-                self,
-                fit_intercept=True,
-                normalize=False,
-                copy_X=True,
-                n_jobs=None,
-            ):
-                super().__init__(
-                    fit_intercept=fit_intercept,
-                    normalize=normalize,
-                    copy_X=copy_X,
-                    n_jobs=n_jobs,
-                )
-
-        def fit(self, X, y, sample_weight=None):
-            """
-            Fit linear model.
-            Parameters
-            ----------
-            X : {array-like, sparse matrix} of shape (n_samples, n_features)
-                Training data.
-            y : array-like of shape (n_samples,) or (n_samples, n_targets)
-                Target values. Will be cast to X's dtype if necessary.
-            sample_weight : array-like of shape (n_samples,), default=None
-                Individual weights for each sample.
-                .. versionadded:: 0.17
-                   parameter *sample_weight* support to LinearRegression.
-            Returns
-            -------
-            self : object
-                Fitted Estimator.
-            """
-            if sklearn_check_version("1.0"):
-                self._check_feature_names(X, reset=True)
-            if sklearn_check_version("1.2"):
-                self._validate_params()
-
-            dispatch(
-                self,
-                "fit",
-                {
-                    "onedal": self.__class__._onedal_fit,
-                    "sklearn": sklearn_LinearRegression.fit,
-                },
-                X,
-                y,
-                sample_weight,
-            )
-            return self
-
-        @wrap_output_data
-        def predict(self, X):
-            """
-            Predict using the linear model.
-            Parameters
-            ----------
-            X : array-like or sparse matrix, shape (n_samples, n_features)
-                Samples.
-            Returns
-            -------
-            C : array, shape (n_samples, n_targets)
-                Returns predicted values.
-            """
-            if sklearn_check_version("1.0"):
-                self._check_feature_names(X, reset=False)
-            return dispatch(
-                self,
-                "predict",
-                {
-                    "onedal": self.__class__._onedal_predict,
-                    "sklearn": sklearn_LinearRegression.predict,
-                },
-                X,
-            )
-
-        def _test_type_and_finiteness(self, X_in):
-            X = X_in if isinstance(X_in, np.ndarray) else np.asarray(X_in)
-
-            dtype = X.dtype
-            if "complex" in str(type(dtype)):
-                return False
-
-            try:
-                _assert_all_finite(X)
-            except BaseException:
-                return False
-            return True
-
-        def _onedal_fit_supported(self, method_name, *data):
-            assert method_name == "fit"
-            assert len(data) == 3
-            X, y, sample_weight = data
-
-            class_name = self.__class__.__name__
-            patching_status = PatchingConditionsChain(
-                f"sklearn.linear_model.{class_name}.fit"
-            )
-
-            normalize_is_set = (
-                hasattr(self, "normalize")
-                and self.normalize
-                and self.normalize != "deprecated"
-            )
-            positive_is_set = hasattr(self, "positive") and self.positive
-
-            n_samples = _num_samples(X)
-            n_features = _num_features(X, fallback_1d=True)
-
-            # Check if equations are well defined
-            is_good_for_onedal = n_samples > (n_features + int(self.fit_intercept))
-
-            dal_ready = patching_status.and_conditions(
-                [
-                    (sample_weight is None, "Sample weight is not supported."),
-                    (
-                        not issparse(X) and not issparse(y),
-                        "Sparse input is not supported.",
-                    ),
-                    (not normalize_is_set, "Normalization is not supported."),
-                    (
-                        not positive_is_set,
-                        "Forced positive coefficients are not supported.",
-                    ),
-                    (
-                        is_good_for_onedal,
-                        "The shape of X (fitting) does not satisfy oneDAL requirements:."
-                        "Number of features + 1 >= number of samples.",
-                    ),
-                ]
-            )
-            if not dal_ready:
-                return patching_status
-
-            if not patching_status.and_condition(
-                self._test_type_and_finiteness(X), "Input X is not supported."
-            ):
-                return patching_status
-
-            patching_status.and_condition(
-                self._test_type_and_finiteness(y), "Input y is not supported."
-            )
-
-            return patching_status
-
-        def _onedal_predict_supported(self, method_name, *data):
-            assert method_name == "predict"
-            assert len(data) == 1
-
-            class_name = self.__class__.__name__
-            patching_status = PatchingConditionsChain(
-                f"sklearn.linear_model.{class_name}.predict"
-            )
-
-            n_samples = _num_samples(*data)
-            model_is_sparse = issparse(self.coef_) or (
-                self.fit_intercept and issparse(self.intercept_)
-            )
-            dal_ready = patching_status.and_conditions(
-                [
-                    (n_samples > 0, "Number of samples is less than 1."),
-                    (not issparse(*data), "Sparse input is not supported."),
-                    (not model_is_sparse, "Sparse coefficients are not supported."),
-                    (hasattr(self, "_onedal_estimator"), "oneDAL model was not trained."),
-                ]
-            )
-            if not dal_ready:
-                return patching_status
-
-            patching_status.and_condition(
-                self._test_type_and_finiteness(*data), "Input X is not supported."
-            )
-
-            return patching_status
-
-        def _onedal_supported(self, method_name, *data):
-            if method_name == "fit":
-                return self._onedal_fit_supported(method_name, *data)
-            if method_name == "predict":
-                return self._onedal_predict_supported(method_name, *data)
-            raise RuntimeError(
-                f"Unknown method {method_name} in {self.__class__.__name__}"
-            )
-
-        def _onedal_gpu_supported(self, method_name, *data):
-            return self._onedal_supported(method_name, *data)
-
-        def _onedal_cpu_supported(self, method_name, *data):
-            return self._onedal_supported(method_name, *data)
-
-        def _initialize_onedal_estimator(self):
-            onedal_params = {"fit_intercept": self.fit_intercept, "copy_X": self.copy_X}
-            self._onedal_estimator = onedal_LinearRegression(**onedal_params)
-
-        def _onedal_fit(self, X, y, sample_weight, queue=None):
-            assert sample_weight is None
-
-            check_params = {
-                "X": X,
-                "y": y,
-                "dtype": [np.float64, np.float32],
-                "accept_sparse": ["csr", "csc", "coo"],
-                "y_numeric": True,
-                "multi_output": True,
-                "force_all_finite": False,
-            }
-            if sklearn_check_version("1.2"):
-                X, y = self._validate_data(**check_params)
-            else:
-                X, y = check_X_y(**check_params)
-
-            if sklearn_check_version("1.0") and not sklearn_check_version("1.2"):
-                self._normalize = _deprecate_normalize(
-                    self.normalize,
-                    default=False,
-                    estimator_name=self.__class__.__name__,
-                )
-
-            self._initialize_onedal_estimator()
-            try:
-                self._onedal_estimator.fit(X, y, queue=queue)
-                self._save_attributes()
-
-            except RuntimeError:
-                logging.getLogger("sklearnex").info(
-                    f"{self.__class__.__name__}.fit "
-                    + get_patch_message("sklearn_after_onedal")
-                )
-
-                del self._onedal_estimator
-                super().fit(X, y)
-
-        def _onedal_predict(self, X, queue=None):
-            X = self._validate_data(X, accept_sparse=False, reset=False)
-            if not hasattr(self, "_onedal_estimator"):
-                self._initialize_onedal_estimator()
-                self._onedal_estimator.coef_ = self.coef_
-                self._onedal_estimator.intercept_ = self.intercept_
-
-            return self._onedal_estimator.predict(X, queue=queue)
-
-else:
-    from daal4py.sklearn.linear_model import LinearRegression
-
-    logging.warning(
-        "Sklearnex LinearRegression requires oneDAL version >= 2023.1 "
-        "but it was not found"
-    )

scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/linear_model/logistic_path.py

@@ -1,17 +0,0 @@
-# ===============================================================================
-# Copyright 2021 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-from daal4py.sklearn.linear_model import LogisticRegression, logistic_regression_path

scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/linear_model/tests/test_linear.py

@@ -1,82 +0,0 @@
-# ===============================================================================
-# Copyright 2021 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-import numpy as np
-import pytest
-from numpy.testing import assert_allclose
-from sklearn.datasets import make_regression
-
-from daal4py.sklearn._utils import daal_check_version
-from onedal.tests.utils._dataframes_support import (
-    _as_numpy,
-    _convert_to_dataframe,
-    get_dataframes_and_queues,
-)
-
-
-@pytest.mark.parametrize("dataframe,queue", get_dataframes_and_queues())
-@pytest.mark.parametrize("macro_block", [None, 1024])
-def test_sklearnex_import_linear(dataframe, queue, macro_block):
-    from sklearnex.linear_model import LinearRegression
-
-    X = np.array([[1, 1], [1, 2], [2, 2], [2, 3]])
-    y = np.dot(X, np.array([1, 2])) + 3
-    X = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
-    y = _convert_to_dataframe(y, sycl_queue=queue, target_df=dataframe)
-    linreg = LinearRegression()
-    if daal_check_version((2024, "P", 0)) and macro_block is not None:
-        hparams = linreg.get_hyperparameters("fit")
-        hparams.cpu_macro_block = macro_block
-        hparams.gpu_macro_block = macro_block
-    linreg.fit(X, y)
-    if daal_check_version((2023, "P", 100)):
-        assert hasattr(linreg, "_onedal_estimator")
-    assert "sklearnex" in linreg.__module__
-    assert linreg.n_features_in_ == 2
-    assert_allclose(_as_numpy(linreg.intercept_), 3.0)
-    assert_allclose(_as_numpy(linreg.coef_), [1.0, 2.0])
-
-
-def test_sklearnex_import_ridge():
-    from sklearnex.linear_model import Ridge
-
-    X = np.array([[1, 1], [1, 2], [2, 2], [2, 3]])
-    y = np.dot(X, np.array([1, 2])) + 3
-    ridgereg = Ridge().fit(X, y)
-    assert "daal4py" in ridgereg.__module__
-    assert_allclose(ridgereg.intercept_, 4.5)
-    assert_allclose(ridgereg.coef_, [0.8, 1.4])
-
-
-def test_sklearnex_import_lasso():
-    from sklearnex.linear_model import Lasso
-
-    X = [[0, 0], [1, 1], [2, 2]]
-    y = [0, 1, 2]
-    lasso = Lasso(alpha=0.1).fit(X, y)
-    assert "daal4py" in lasso.__module__
-    assert_allclose(lasso.intercept_, 0.15)
-    assert_allclose(lasso.coef_, [0.85, 0.0])
-
-
-def test_sklearnex_import_elastic():
-    from sklearnex.linear_model import ElasticNet
-
-    X, y = make_regression(n_features=2, random_state=0)
-    elasticnet = ElasticNet(random_state=0).fit(X, y)
-    assert "daal4py" in elasticnet.__module__
-    assert_allclose(elasticnet.intercept_, 1.451, atol=1e-3)
-    assert_allclose(elasticnet.coef_, [18.838, 64.559], atol=1e-3)