scikit-learn-intelex 2024.2.0__py310-none-win_amd64.whl → 2024.3.0__py310-none-win_amd64.whl

scikit_learn_intelex-2024.3.0.data/data/Lib/site-packages/sklearnex/tests/test_patching.py

@@ -0,0 +1,361 @@
+# ==============================================================================
+# Copyright 2021 Intel Corporation
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+
+import importlib
+import inspect
+import logging
+import os
+import re
+import sys
+from inspect import signature
+
+import numpy as np
+import numpy.random as nprnd
+import pytest
+from _utils import (
+    DTYPES,
+    PATCHED_FUNCTIONS,
+    PATCHED_MODELS,
+    SPECIAL_INSTANCES,
+    UNPATCHED_FUNCTIONS,
+    UNPATCHED_MODELS,
+    gen_dataset,
+    gen_models_info,
+)
+from sklearn.base import (
+    BaseEstimator,
+    ClassifierMixin,
+    ClusterMixin,
+    OutlierMixin,
+    RegressorMixin,
+    TransformerMixin,
+)
+
+from daal4py.sklearn._utils import sklearn_check_version
+from onedal.tests.utils._dataframes_support import (
+    _convert_to_dataframe,
+    get_dataframes_and_queues,
+)
+from sklearnex import is_patched_instance
+from sklearnex.dispatcher import _is_preview_enabled
+from sklearnex.metrics import pairwise_distances, roc_auc_score
+
+
+@pytest.mark.parametrize("dtype", DTYPES)
+@pytest.mark.parametrize(
+    "dataframe, queue", get_dataframes_and_queues(dataframe_filter_="numpy")
+)
+@pytest.mark.parametrize("metric", ["cosine", "correlation"])
+def test_pairwise_distances_patching(caplog, dataframe, queue, dtype, metric):
+    with caplog.at_level(logging.WARNING, logger="sklearnex"):
+        rng = nprnd.default_rng()
+        X = _convert_to_dataframe(
+            rng.random(size=1000), sycl_queue=queue, target_df=dataframe, dtype=dtype
+        )
+
+        _ = pairwise_distances(X.reshape(1, -1), metric=metric)
+    assert all(
+        [
+            "running accelerated version" in i.message
+            or "fallback to original Scikit-learn" in i.message
+            for i in caplog.records
+        ]
+    ), f"sklearnex patching issue in pairwise_distances with log: \n{caplog.text}"
+
+
+@pytest.mark.parametrize(
+    "dtype", [i for i in DTYPES if "32" in i.__name__ or "64" in i.__name__]
+)
+@pytest.mark.parametrize(
+    "dataframe, queue", get_dataframes_and_queues(dataframe_filter_="numpy")
+)
+def test_roc_auc_score_patching(caplog, dataframe, queue, dtype):
+    if dtype in [np.uint32, np.uint64] and sys.platform == "win32":
+        pytest.skip("Windows issue with unsigned ints")
+    with caplog.at_level(logging.WARNING, logger="sklearnex"):
+        rng = nprnd.default_rng()
+        X = _convert_to_dataframe(
+            rng.integers(2, size=1000),
+            sycl_queue=queue,
+            target_df=dataframe,
+            dtype=dtype,
+        )
+        y = _convert_to_dataframe(
+            rng.integers(2, size=1000),
+            sycl_queue=queue,
+            target_df=dataframe,
+            dtype=dtype,
+        )
+
+        _ = roc_auc_score(X, y)
+    assert all(
+        [
+            "running accelerated version" in i.message
+            or "fallback to original Scikit-learn" in i.message
+            for i in caplog.records
+        ]
+    ), f"sklearnex patching issue in roc_auc_score with log: \n{caplog.text}"
+
+
+@pytest.mark.parametrize("dtype", DTYPES)
+@pytest.mark.parametrize(
+    "dataframe, queue", get_dataframes_and_queues(dataframe_filter_="numpy")
+)
+@pytest.mark.parametrize("estimator, method", gen_models_info(PATCHED_MODELS))
+def test_standard_estimator_patching(caplog, dataframe, queue, dtype, estimator, method):
+    with caplog.at_level(logging.WARNING, logger="sklearnex"):
+        est = PATCHED_MODELS[estimator]()
+
+        if estimator == "TSNE" and method == "fit_transform":
+            pytest.skip("TSNE.fit_transform is too slow for common testing")
+        elif (
+            estimator == "Ridge"
+            and method in ["predict", "score"]
+            and sys.platform == "win32"
+            and dtype in [np.uint32, np.uint64]
+        ):
+            pytest.skip("Windows segmentation fault for Ridge.predict for unsigned ints")
+        elif not hasattr(est, method):
+            pytest.skip(f"sklearn available_if prevents testing {estimator}.{method}")
+        X, y = gen_dataset(est, queue=queue, target_df=dataframe, dtype=dtype)
+        est.fit(X, y)
+
+        if method != "score":
+            getattr(est, method)(X)
+        else:
+            est.score(X, y)
+    assert all(
+        [
+            "running accelerated version" in i.message
+            or "fallback to original Scikit-learn" in i.message
+            for i in caplog.records
+        ]
+    ), f"sklearnex patching issue in {estimator}.{method} with log: \n{caplog.text}"
+
+
+@pytest.mark.parametrize("dtype", DTYPES)
+@pytest.mark.parametrize(
+    "dataframe, queue", get_dataframes_and_queues(dataframe_filter_="numpy")
+)
+@pytest.mark.parametrize("estimator, method", gen_models_info(SPECIAL_INSTANCES))
+def test_special_estimator_patching(caplog, dataframe, queue, dtype, estimator, method):
+    # prepare logging
+
+    with caplog.at_level(logging.WARNING, logger="sklearnex"):
+        est = SPECIAL_INSTANCES[estimator]
+
+        X, y = gen_dataset(est, queue=queue, target_df=dataframe, dtype=dtype)
+        est.fit(X, y)
+
+        if not hasattr(est, method):
+            pytest.skip(f"sklearn available_if prevents testing {estimator}.{method}")
+        if method != "score":
+            getattr(est, method)(X)
+        else:
+            est.score(X, y)
+    assert all(
+        [
+            "running accelerated version" in i.message
+            or "fallback to original Scikit-learn" in i.message
+            for i in caplog.records
+        ]
+    ), f"sklearnex patching issue in {estimator}.{method} with log: \n{caplog.text}"
+
+
+@pytest.mark.parametrize("estimator", UNPATCHED_MODELS.keys())
+def test_standard_estimator_signatures(estimator):
+    est = PATCHED_MODELS[estimator]()
+    unpatched_est = UNPATCHED_MODELS[estimator]()
+
+    # all public sklearn methods should have signature matches in sklearnex
+
+    unpatched_est_methods = [
+        i
+        for i in dir(unpatched_est)
+        if not i.startswith("_") and not i.endswith("_") and hasattr(unpatched_est, i)
+    ]
+    for method in unpatched_est_methods:
+        est_method = getattr(est, method)
+        unpatched_est_method = getattr(unpatched_est, method)
+        if callable(unpatched_est_method):
+            regex = rf"(?:sklearn|daal4py)\S*{estimator}"  # needed due to differences in module structure
+            patched_sig = re.sub(regex, estimator, str(signature(est_method)))
+            unpatched_sig = re.sub(regex, estimator, str(signature(unpatched_est_method)))
+            assert (
+                patched_sig == unpatched_sig
+            ), f"Signature of {estimator}.{method} does not match sklearn"
+
+
+@pytest.mark.parametrize("estimator", UNPATCHED_MODELS.keys())
+def test_standard_estimator_init_signatures(estimator):
+    # Several estimators have additional parameters that are user-accessible
+    # which are sklearnex-specific. They will fail and are removed from tests.
+    # remove n_jobs due to estimator patching for sklearnex (known deviation)
+    patched_sig = str(signature(PATCHED_MODELS[estimator].__init__))
+    unpatched_sig = str(signature(UNPATCHED_MODELS[estimator].__init__))
+
+    # Sklearnex allows for positional kwargs and n_jobs, when sklearn doesn't
+    for kwarg in ["n_jobs=None", "*"]:
+        patched_sig = patched_sig.replace(", " + kwarg, "")
+        unpatched_sig = unpatched_sig.replace(", " + kwarg, "")
+
+    # Special sklearnex-specific kwargs are removed from signatures here
+    if estimator in [
+        "RandomForestRegressor",
+        "RandomForestClassifier",
+        "ExtraTreesRegressor",
+        "ExtraTreesClassifier",
+    ]:
+        for kwarg in ["min_bin_size=1", "max_bins=256"]:
+            patched_sig = patched_sig.replace(", " + kwarg, "")
+
+    assert (
+        patched_sig == unpatched_sig
+    ), f"Signature of {estimator}.__init__ does not match sklearn"
+
+
+@pytest.mark.parametrize(
+    "function",
+    [
+        i
+        for i in UNPATCHED_FUNCTIONS.keys()
+        if i not in ["train_test_split", "set_config", "config_context"]
+    ],
+)
+def test_patched_function_signatures(function):
+    # certain functions are dropped from the test
+    # as they add functionality to the underlying sklearn function
+    if not sklearn_check_version("1.1") and function == "_assert_all_finite":
+        pytest.skip("Sklearn versioning not added to _assert_all_finite")
+    func = PATCHED_FUNCTIONS[function]
+    unpatched_func = UNPATCHED_FUNCTIONS[function]
+
+    if callable(unpatched_func):
+        assert str(signature(func)) == str(
+            signature(unpatched_func)
+        ), f"Signature of {func} does not match sklearn"
+
+
+def test_patch_map_match():
+    # This rule applies to functions and classes which are out of preview.
+    # Items listed in a matching submodule's __all__ attribute should be
+    # in get_patch_map. There should not be any missing or additional elements.
+
+    def list_all_attr(string):
+        try:
+            modules = set(importlib.import_module(string).__all__)
+        except ModuleNotFoundError:
+            modules = set([None])
+        return modules
+
+    if _is_preview_enabled():
+        pytest.skip("preview sklearnex has been activated")
+    patched = {**PATCHED_MODELS, **PATCHED_FUNCTIONS}
+
+    sklearnex__all__ = list_all_attr("sklearnex")
+    sklearn__all__ = list_all_attr("sklearn")
+
+    module_map = {i: i for i in sklearnex__all__.intersection(sklearn__all__)}
+
+    # _assert_all_finite patches an internal sklearn function which isn't
+    # exposed via __all__ in sklearn. It is a special case where this rule
+    # is not applied (e.g. it is grandfathered in).
+    del patched["_assert_all_finite"]
+
+    # remove all scikit-learn-intelex-only estimators
+    for i in patched.copy():
+        if i not in UNPATCHED_MODELS and i not in UNPATCHED_FUNCTIONS:
+            del patched[i]
+
+    for module in module_map:
+        sklearn_module__all__ = list_all_attr("sklearn." + module_map[module])
+        sklearnex_module__all__ = list_all_attr("sklearnex." + module)
+        intersect = sklearnex_module__all__.intersection(sklearn_module__all__)
+
+        for i in intersect:
+            if i:
+                del patched[i]
+            else:
+                del patched[module]
+    assert patched == {}, f"{patched.keys()} were not properly patched"
+
+
+@pytest.mark.parametrize("estimator", UNPATCHED_MODELS.keys())
+def test_is_patched_instance(estimator):
+    patched = PATCHED_MODELS[estimator]
+    unpatched = UNPATCHED_MODELS[estimator]
+    assert is_patched_instance(patched), f"{patched} is a patched instance"
+    assert not is_patched_instance(unpatched), f"{unpatched} is an unpatched instance"
+
+
+@pytest.mark.parametrize("estimator", PATCHED_MODELS.keys())
+def test_if_estimator_inherits_sklearn(estimator):
+    est = PATCHED_MODELS[estimator]
+    if estimator in UNPATCHED_MODELS:
+        assert issubclass(
+            est, UNPATCHED_MODELS[estimator]
+        ), f"{estimator} does not inherit from the patched sklearn estimator"
+    else:
+        assert issubclass(est, BaseEstimator)
+        assert any(
+            [
+                issubclass(est, i)
+                for i in [
+                    ClassifierMixin,
+                    ClusterMixin,
+                    OutlierMixin,
+                    RegressorMixin,
+                    TransformerMixin,
+                ]
+            ]
+        ), f"{estimator} does not inherit a sklearn Mixin"
+
+
+@pytest.mark.parametrize("estimator", UNPATCHED_MODELS.keys())
+def test_docstring_patching_match(estimator):
+    patched = PATCHED_MODELS[estimator]
+    unpatched = UNPATCHED_MODELS[estimator]
+    patched_docstrings = {
+        i: getattr(patched, i).__doc__
+        for i in dir(patched)
+        if not i.startswith("_") and not i.endswith("_") and hasattr(patched, i)
+    }
+    unpatched_docstrings = {
+        i: getattr(unpatched, i).__doc__
+        for i in dir(unpatched)
+        if not i.startswith("_") and not i.endswith("_") and hasattr(unpatched, i)
+    }
+
+    # check class docstring match if a docstring is available
+
+    assert (patched.__doc__ is None) == (unpatched.__doc__ is None)
+
+    # check class attribute docstrings
+
+    for i in unpatched_docstrings:
+        assert (patched_docstrings[i] is None) == (unpatched_docstrings[i] is None)
+
+
+@pytest.mark.parametrize("member", ["_onedal_cpu_supported", "_onedal_gpu_supported"])
+@pytest.mark.parametrize(
+    "name",
+    [i for i in PATCHED_MODELS.keys() if "sklearnex" in PATCHED_MODELS[i].__module__],
+)
+def test_onedal_supported_member(name, member):
+    patched = PATCHED_MODELS[name]
+    sig = str(inspect.signature(getattr(patched, member)))
+    assert "(self, method_name, *data)" == sig

{scikit_learn_intelex-2024.2.0.dist-info → scikit_learn_intelex-2024.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scikit-learn-intelex
-Version: 2024.2.0
+Version: 2024.3.0
 Summary: Intel(R) Extension for Scikit-learn is a seamless way to speed up your Scikit-learn application.
 Home-page: https://github.com/intel/scikit-learn-intelex
 Author: Intel Corporation
@@ -31,7 +31,7 @@ Classifier: Topic :: Software Development
 Requires-Python: >=3.7
 Description-Content-Type: text/markdown
 License-File: LICENSE.txt
-Requires-Dist: daal4py (==2024.2.0)
+Requires-Dist: daal4py (==2024.3.0)
 Requires-Dist: scikit-learn (>=0.22)
 
 

scikit_learn_intelex-2024.3.0.dist-info/RECORD

@@ -0,0 +1,98 @@
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scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/decomposition/pca.py

@@ -1,17 +0,0 @@
-# ===============================================================================
-# Copyright 2021 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-from daal4py.sklearn.decomposition import PCA

scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/decomposition/tests/test_pca.py

@@ -1,27 +0,0 @@
-# ===============================================================================
-# Copyright 2023 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-import numpy as np
-from numpy.testing import assert_allclose
-
-
-def test_sklearnex_import():
-    from sklearnex.decomposition import PCA
-
-    X = np.array([[-1, -1], [-2, -1], [-3, -2], [1, 1], [2, 1], [3, 2]])
-    pca = PCA(n_components=2, svd_solver="full").fit(X)
-    assert "daal4py" in pca.__module__
-    assert_allclose(pca.singular_values_, [6.30061232, 0.54980396])

scikit_learn_intelex-2024.2.0.data/data/Lib/site-packages/sklearnex/preview/decomposition/__init__.py

@@ -1,19 +0,0 @@
-# ===============================================================================
-# Copyright 2023 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-from .pca import PCA
-
-__all__ = ["PCA"]