scientiflow-cli 0.4.15__py3-none-any.whl → 0.4.17__py3-none-any.whl

scientiflow_cli/main.py

@@ -117,7 +117,10 @@ def main():
         elif args.logout:
             logout_user()
         elif args.list_jobs:
-            get_jobs()
+            if args.cloud_job:
+                get_jobs(is_cloud=args.cloud_job)
+            else:
+                get_jobs()
         elif args.set_base_directory:
             set_base_directory(hostname=args.hostname)
         elif args.execute_jobs is not None:

scientiflow_cli/pipeline/decode_and_execute.py

@@ -12,6 +12,85 @@ from scientiflow_cli.services.rich_printer import RichPrinter
 
 printer = RichPrinter()
 
+# Global background job tracker
+class GlobalBackgroundJobTracker:
+    _instance = None
+    _lock = threading.Lock()
+    
+    def __new__(cls):
+        if cls._instance is None:
+            with cls._lock:
+                if cls._instance is None:
+                    cls._instance = super().__new__(cls)
+                    cls._instance._initialize()
+        return cls._instance
+    
+    def _initialize(self):
+        self.background_executors = []
+        self.background_jobs_count = 0
+        self.background_jobs_completed = 0
+        self.background_jobs_lock = threading.Lock()
+    
+    def register_background_job(self, executor, futures, node_label, log_file_path):
+        """Register a background job for global tracking."""
+        with self.background_jobs_lock:
+            self.background_jobs_count += 1
+            self.background_executors.append(executor)
+        
+        # Start monitoring in a separate thread
+        monitor_thread = threading.Thread(
+            target=self._monitor_job,
+            args=(futures, node_label, executor, log_file_path),
+            daemon=True
+        )
+        monitor_thread.start()
+    
+    def _monitor_job(self, futures, node_label, executor, log_file_path):
+        """Monitor background job completion."""
+        all_successful = True
+        for future in as_completed(futures):
+            success = future.result()
+            if not success:
+                all_successful = False
+        
+        if not all_successful:
+            with open(log_file_path, 'a') as f:
+                f.write(f"[ERROR] Background job {node_label} failed\n")
+            printer.print_message(f"[BACKGROUND JOB] {node_label} Failed - some commands in background job failed", style="bold red")
+        else:
+            printer.print_message(f"[BACKGROUND JOB] {node_label} Execution completed in the background", style="bold green")
+        
+        # Clean up executor
+        executor.shutdown(wait=False)
+        with self.background_jobs_lock:
+            if executor in self.background_executors:
+                self.background_executors.remove(executor)
+            self.background_jobs_completed += 1
+    
+    def wait_for_all_jobs(self):
+        """Wait for all background jobs to complete."""
+        import time
+        if self.background_jobs_count > 0:
+            printer.print_message(f"[INFO] Waiting for {self.background_jobs_count} background job(s) to complete...", style="bold yellow")
+            
+            while True:
+                with self.background_jobs_lock:
+                    if self.background_jobs_completed >= self.background_jobs_count:
+                        break
+                time.sleep(0.5)  # Check every 500ms
+            
+            printer.print_message("[INFO] All background jobs completed.", style="bold green")
+    
+    def reset(self):
+        """Reset the tracker for a new execution cycle."""
+        with self.background_jobs_lock:
+            self.background_executors = []
+            self.background_jobs_count = 0
+            self.background_jobs_completed = 0
+
+# Global tracker instance
+global_bg_tracker = GlobalBackgroundJobTracker()
+
 def execute_background_command_standalone(command: str, log_file_path: str):
     """Execute a command in background without real-time output display - standalone function for multiprocessing."""
     try:
@@ -37,7 +116,7 @@ def execute_background_command_standalone(command: str, log_file_path: str):
         return False
 
 class PipelineExecutor:
-    def __init__(self, base_dir: str, project_id: int, project_job_id: int, project_title: str, job_dir_name: str, nodes: List[Dict[str, Any]], edges: List[Dict[str, str]], environment_variables: Dict[str, str], start_node: str = None, end_node: str = None, job_status: str = None, current_node_from_config: str = None):
+    def __init__(self, base_dir: str, project_id: int, project_job_id: int, project_title: str, job_dir_name: str, nodes: List[Dict[str, Any]], edges: List[Dict[str, str]], environment_variables: Dict[str, str], start_node: str = None, end_node: str = None, job_status: str = None, current_node_from_config: str = None, is_cloud: bool = False):
         self.base_dir = base_dir
         self.project_id = project_id
         self.project_job_id = project_job_id
@@ -51,6 +130,7 @@ class PipelineExecutor:
         self.current_node = None
         self.job_status = job_status
         self.current_node_from_config = current_node_from_config
+        self.is_cloud = is_cloud
         self.background_executors = []  # Keep track of background executors
         self.background_jobs_count = 0  # Track number of active background jobs
         self.background_jobs_completed = 0  # Track completed background jobs
@@ -78,6 +158,18 @@ class PipelineExecutor:
         # Initialize log file
         self.init_log()
 
+    # ✅ Helper method to conditionally notify cloud manager
+    def _notify_cloud(self, completion_type: str):
+        """Triggers scientiflow-cloud commands if in cloud mode."""
+        if not self.is_cloud:
+            return
+        try:
+            cmd = ["scientiflow-cloud", f"--completed-job-{completion_type}", str(self.project_job_id)]
+            subprocess.run(cmd, check=False)
+            logger.info(f"Sent {completion_type} signal to cloud manager.")
+        except Exception as e:
+            print(f"[ERROR] Cloud notification failed: {e}")
+
     def init_log(self):
         """Initialize the log file."""
         try:
@@ -110,6 +202,8 @@ class PipelineExecutor:
             body = {"project_job_id": self.project_job_id, "terminal_output": terminal_output}
             make_auth_request(endpoint="/agent-application/update-terminal-output", method="POST", data=body, error_message="Unable to update terminal output!")
             printer.print_message("[+] Terminal output updated successfully.", style="bold green")
+            # ✅ TRIGGER: FULL COMPLETION
+            self._notify_cloud("fully")
         except Exception as e:
             print(f"[ERROR] Failed to update terminal output: {e}")
 
@@ -165,40 +259,14 @@ class PipelineExecutor:
             self.update_terminal_output()
             raise SystemExit("[ERROR] Pipeline execution terminated due to an unexpected error.")
 
-    def monitor_background_job(self, futures, node_label, executor):
-        """Monitor background job completion in a separate thread."""
-        def monitor():
-            all_successful = True
-            for future in as_completed(futures):
-                success = future.result()
-                if not success:
-                    all_successful = False
-            
-            if not all_successful:
-                self.log_output(f"[ERROR] Background job {node_label} failed")
-                printer.print_message(f"[BACKGROUND JOB] {node_label} Failed - some commands in background job failed", style="bold red")
-            else:
-                printer.print_message(f"[BACKGROUND JOB] {node_label} Execution completed in the background", style="bold green")
-            
-            # Clean up executor
-            executor.shutdown(wait=False)
-            if executor in self.background_executors:
-                self.background_executors.remove(executor)
-            
-            # Update background job completion count
-            with self.background_jobs_lock:
-                self.background_jobs_completed += 1
-        
-        # Start monitoring thread
-        monitor_thread = threading.Thread(target=monitor, daemon=True)
-        monitor_thread.start()
 
     def wait_for_background_jobs(self):
         """Wait for all background jobs to complete."""
         import time
         if self.background_jobs_count > 0:
             printer.print_message(f"[INFO] Waiting for {self.background_jobs_count} background job(s) to complete...", style="bold yellow")
-            
+            # ✅ TRIGGER: PARTIAL COMPLETION (Frees GPU/Primary CPU while waiting for cleanup)
+            self._notify_cloud("partially")
             while True:
                 with self.background_jobs_lock:
                     if self.background_jobs_completed >= self.background_jobs_count:
@@ -284,19 +352,14 @@ class PipelineExecutor:
                 
                 # Execute commands in background using ProcessPoolExecutor (non-blocking)
                 if command_list:
-                    # Increment background jobs counter
-                    with self.background_jobs_lock:
-                        self.background_jobs_count += 1
-                    
                     executor = ProcessPoolExecutor(max_workers=numberOfThreads)
-                    self.background_executors.append(executor)  # Keep reference to prevent garbage collection
                     futures = []
                     for cmd in command_list:
                         future = executor.submit(execute_background_command_standalone, cmd, self.log_file_path)
                         futures.append(future)
                     
-                    # Start monitoring in a separate thread (non-blocking)
-                    self.monitor_background_job(futures, node_label, executor)
+                    # Register with global tracker (non-blocking)
+                    global_bg_tracker.register_background_job(executor, futures, node_label, self.log_file_path)
                     
                     # Don't wait for completion, immediately continue to next node
                 else:
@@ -323,7 +386,6 @@ class PipelineExecutor:
         """Start executing the pipeline."""
         # Use job status from configuration instead of API call
         current_status = self.job_status
-        
         if current_status == "running":
             # Job is already running, resume from start but skip until current node
             current_node_id = self.current_node_from_config
@@ -344,9 +406,9 @@ class PipelineExecutor:
         if starting_node:
             self.dfs(starting_node)
 
-        # Wait for all background jobs to complete before marking pipeline as completed
-        self.wait_for_background_jobs()
-
+        # Don't wait for background jobs here - let them continue across multiple jobs
+        # Background jobs will be waited for at the end of all job executions
+        
         update_job_status(self.project_job_id, "completed")
         update_stopped_at_node(self.project_id, self.project_job_id, self.current_node)
 
@@ -354,7 +416,8 @@ class PipelineExecutor:
         self.update_terminal_output()
 
 # External function to initiate the pipeline execution
-def decode_and_execute_pipeline(base_dir: str, project_id: int, project_job_id: int, project_title: str, job_dir_name: str, nodes: List[Dict[str, Any]], edges: List[Dict[str, str]], environment_variables: Dict[str, str], start_node: str = None, end_node: str = None, job_status: str = None, current_node_from_config: str = None):
+def decode_and_execute_pipeline(base_dir: str, project_id: int, project_job_id: int, project_title: str, job_dir_name: str, nodes: List[Dict[str, Any]], edges: List[Dict[str, str]], environment_variables: Dict[str, str], start_node: str = None, end_node: str = None, job_status: str = None, current_node_from_config: str = None, is_cloud: bool = False):
     """Initialize and execute the pipeline."""
-    executor = PipelineExecutor(base_dir, project_id, project_job_id, project_title, job_dir_name, nodes, edges, environment_variables, start_node, end_node, job_status, current_node_from_config)
-    executor.decode_and_execute_pipeline()
+    executor = PipelineExecutor(base_dir, project_id, project_job_id, project_title, job_dir_name, nodes, edges, environment_variables, start_node, end_node, job_status, current_node_from_config, is_cloud)
+    executor.decode_and_execute_pipeline()
+

scientiflow_cli/pipeline/get_jobs.py

@@ -4,8 +4,12 @@ from scientiflow_cli.services.rich_printer import RichPrinter
 
 printer = RichPrinter()
 
-def get_jobs() -> list[dict]:
-    response = make_auth_request(endpoint="/agent-application/check-jobs-to-execute", method="GET", error_message="Unable to fetch jobs!")
+def get_jobs(is_cloud: bool = False) -> list[dict]:
+    if is_cloud:
+        response = make_auth_request(endpoint="/agent-application/check-cloud-jobs-to-execute", method="GET", error_message="Unable to fetch jobs!")
+        printer.print_message("Fetching cloud jobs to execute...", style="bold blue")
+    else:
+        response = make_auth_request(endpoint="/agent-application/check-jobs-to-execute", method="GET", error_message="Unable to fetch jobs!")
     try:
         jobs = response.json()
         if len(jobs) == 0:

scientiflow_cli/services/executor.py

@@ -1,7 +1,7 @@
 from concurrent.futures import ThreadPoolExecutor
 import asyncio
 from scientiflow_cli.pipeline.get_jobs import get_jobs
-from scientiflow_cli.pipeline.decode_and_execute import decode_and_execute_pipeline
+from scientiflow_cli.pipeline.decode_and_execute import decode_and_execute_pipeline, global_bg_tracker
 from scientiflow_cli.pipeline.container_manager import get_job_containers
 from scientiflow_cli.utils.file_manager import create_job_dirs, get_job_files
 from scientiflow_cli.services.rich_printer import RichPrinter
@@ -37,7 +37,7 @@ def execute_jobs(job_ids: list[int] = None, parallel: bool = False, is_cloud: bo
             if matching_jobs:
                 if is_cloud:
                     for job in matching_jobs:
-                        job['project_title'] = str(job['project']['id']) + '_' + job['project']['project_title']
+                        job['project']['project_title'] = str(job['project']['id']) + '_' + job['project']['project_title']
                         if 'server' not in job or job['server'] is None:
                             job['server'] = {'base_directory':None}
                         job['server']['base_directory'] = get_base_directory()
@@ -117,6 +117,9 @@ async def execute_async(jobs: list[dict]) -> None:
 
     await asyncio.gather(*running_jobs)  # Wait for all jobs to complete
     printer.print_success("[ASYNC COMPLETE] All jobs finished!")
+    
+    # Wait for all background jobs from all executed jobs to complete
+    global_bg_tracker.wait_for_all_jobs()
 
 
 def execute_single_job(job: dict, is_cloud: bool = False) -> None:
@@ -169,8 +172,8 @@ def execute_single_job(job: dict, is_cloud: bool = False) -> None:
             printer.print_success(f"[+] Resuming execution for job ID: {project_job_id}")
         else:
             printer.print_success(f"[+] Starting execution for job ID: {project_job_id}")
-            
-        decode_and_execute_pipeline(base_dir, project_id, project_job_id, project_title, job_dir_name, nodes, edges, environment_variables, start_node=start_node, end_node=end_node, job_status=job_status, current_node_from_config=current_node_from_config)
+
+        decode_and_execute_pipeline(base_dir, project_id, project_job_id, project_title, job_dir_name, nodes, edges, environment_variables, start_node=start_node, end_node=end_node, job_status=job_status, current_node_from_config=current_node_from_config, is_cloud=is_cloud)
         printer.print_success(f"[+] Execution completed for job ID: {project_job_id}")
 
     except ValueError as value_err:

scientiflow_cli/services/request_handler.py

@@ -21,7 +21,6 @@ def make_auth_request(endpoint, method, data=None, params=None, error_message=No
         return handle_response(response, error_message)
 
     except requests.RequestException as e:
-        print(e)
         return "Request failed"
 
 
@@ -33,12 +32,10 @@ def make_no_auth_request(endpoint, method, data=None, error_message=None):
             response = requests.get(base_url + endpoint)
         elif method == 'POST':
             response = requests.post(base_url + endpoint, json=data)
-            print(response)
         else:
             raise ValueError("Unsupported HTTP method")
 
         return handle_response(response, error_message)
 
     except requests.RequestException as e:
-        print(e)
         return "Request failed"

{scientiflow_cli-0.4.15.dist-info → scientiflow_cli-0.4.17.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scientiflow-cli
-Version: 0.4.15
+Version: 0.4.17
 Summary: CLI tool for scientiflow. This application runs on the client side, decodes pipelines, and executes them in the configured order!
 License: Proprietary
 Author: ScientiFlow

{scientiflow_cli-0.4.15.dist-info → scientiflow_cli-0.4.17.dist-info}/RECORD

@@ -4,17 +4,17 @@ scientiflow_cli/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSu
 scientiflow_cli/cli/auth_utils.py,sha256=XeGLqBhbaV5q-I7br-WvLxpL1O_XMB1hhZPEunc1DQc,1793
 scientiflow_cli/cli/login.py,sha256=RLoVpbAH9MpySCsGSe29MUpz4kdTDdBhxs1L41Xg8qw,846
 scientiflow_cli/cli/logout.py,sha256=EzpFPA1ENoXqLvduo6rxaVF09GqgO5GCRvnGMDr5BEw,420
-scientiflow_cli/main.py,sha256=AliEFU3bebJV2tbvxQYbiMY1bqVGqq3-a6dzkVUXong,6982
+scientiflow_cli/main.py,sha256=riQJWfZV43zS2t-N1oQao2vTfGJF0May1t6hTniounA,7085
 scientiflow_cli/pipeline/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scientiflow_cli/pipeline/container_manager.py,sha256=KAnE5AvsSg4cewLc_v4gWCqhKGoc7ycHOtl_HYxUK7E,8444
-scientiflow_cli/pipeline/decode_and_execute.py,sha256=UhmIQrFxhJvtwqcbFIeg1wiDt2DAhVowASKiYSl5mDk,18257
-scientiflow_cli/pipeline/get_jobs.py,sha256=69jOIVwXd8j2lAYy28r2QcsjFT4yRpXNOqsfopiZhFs,1498
+scientiflow_cli/pipeline/decode_and_execute.py,sha256=-y52feHSuRTaNZO5Hxg0iOEapwuMFgQ6i9q_HIU0Uo0,20761
+scientiflow_cli/pipeline/get_jobs.py,sha256=pi9pIPw7ZwIiIRN50BgUMtzf542eqGxQfTLin9BmnUE,1786
 scientiflow_cli/services/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scientiflow_cli/services/auth_service.py,sha256=lknARfVTjRCH-4yWVPKiS330NIVHxFw3HlQdN2Lw3Og,3343
 scientiflow_cli/services/base_directory.py,sha256=2dUvGYk4enLe3Cagcs_bfv2kNuHg1ws-dtMDEW_tccI,2726
-scientiflow_cli/services/executor.py,sha256=1TAST7zokikecTJZ5Pdd9hrlNncAzcuDeJnlGJhGGk0,11813
+scientiflow_cli/services/executor.py,sha256=RuLB2vt4msI8QenA-lMPuVfDn7fLvfYrALpWdN6ZmuA,11967
 scientiflow_cli/services/modes.py,sha256=-Bk1CJO0vgc8v_rXktfKAyHSF6cr5bGbufSGa_DtvY4,1241
-scientiflow_cli/services/request_handler.py,sha256=5Y1B84kpHP-EDAI9d6fjaPtQE1-dMKCtoCaqvixifSU,1397
+scientiflow_cli/services/request_handler.py,sha256=CjJqEjXt8AOzyZq6UwUBzRBhahqWHj1_OKUyPG3PpFs,1335
 scientiflow_cli/services/rich_printer.py,sha256=5ORAaZOa_84m6vP-novpPOI70UPxt0pEvmRq9999Ifg,2129
 scientiflow_cli/services/status_updater.py,sha256=VjC2V6lWzjwBN7ZhCQzW_h_sMG25Poeh35MNTeVdt5E,2910
 scientiflow_cli/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -24,8 +24,8 @@ scientiflow_cli/utils/file_manager.py,sha256=KLdJlIzFng_BfKHHZzQNp35hXsFMWfgy4OU
 scientiflow_cli/utils/logger.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scientiflow_cli/utils/mock.py,sha256=UZ9cN2Qx3EAXcxnLQY5z4DQWy4jflnWFnfNTsuvnFH8,11237
 scientiflow_cli/utils/singularity.py,sha256=jy8ep7Xa1Eg4fptNjyXLPuVN2KA8l4dFil-w-KaVNkw,4956
-scientiflow_cli-0.4.15.dist-info/LICENSE.md,sha256=nb6GGGYuS_KXe33mSNwcEW-QzvwM475NQ4cNE7KBb34,425
-scientiflow_cli-0.4.15.dist-info/METADATA,sha256=LBG22lfG_UFtnbrC64_MXN8FK86HgPpPehq4hMFmrbM,2492
-scientiflow_cli-0.4.15.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-scientiflow_cli-0.4.15.dist-info/entry_points.txt,sha256=0lq2mjcG5hGfODrQodeMSAy9RfE2EX1MZSHRpfSncxc,61
-scientiflow_cli-0.4.15.dist-info/RECORD,,
+scientiflow_cli-0.4.17.dist-info/LICENSE.md,sha256=nb6GGGYuS_KXe33mSNwcEW-QzvwM475NQ4cNE7KBb34,425
+scientiflow_cli-0.4.17.dist-info/METADATA,sha256=zcFXPA5sPj0O8elcrKhXeluREBM8gB-be-E7TzzhL2A,2492
+scientiflow_cli-0.4.17.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+scientiflow_cli-0.4.17.dist-info/entry_points.txt,sha256=0lq2mjcG5hGfODrQodeMSAy9RfE2EX1MZSHRpfSncxc,61
+scientiflow_cli-0.4.17.dist-info/RECORD,,