scez 0.1.0__py3-none-any.whl → 0.1.1__py3-none-any.whl
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scez/__init__.py
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@@ -8,8 +8,9 @@ import scanpy as sc
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import matplotlib.pyplot as plt
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import tomli
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from pathlib import Path
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toml_dict = tomli.load(open('pyproject.toml','rb'))
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toml_dict = tomli.load(open(Path(__file__).parent.parent / 'pyproject.toml','rb'))
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__version__ = toml_dict['tool']['poetry']['version']
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: scez
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Version: 0.1.
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Version: 0.1.1
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Summary: Single Cell Analysis, Easy Mode!
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License: MIT
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Author: Abe Arab
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@@ -14,20 +14,33 @@ Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Requires-Dist: adjustText (>=0.7.3,<0.8.0)
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Requires-Dist: adpbulk (>=0.1.4,<0.2.0)
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Requires-Dist: anndata (>=0.
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Requires-Dist: anndata (>=0.8.0,<0.9.0)
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Requires-Dist: blitzgsea (>=1.3.0,<2.0.0)
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Requires-Dist: bottleneck (>=1.3.6,<2.0.0)
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Requires-Dist: matplotlib (>=3.7,<4.0)
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Requires-Dist: numpy (>=1.
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Requires-Dist: pandas (>=
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Requires-Dist: numpy (>=1.26.0,<2.0.0)
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Requires-Dist: pandas (>=2.1.4,<3.0.0)
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Requires-Dist: pydeseq2 (>=0.4.0,<0.5.0)
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Requires-Dist: pytdc (>=1.0.0,<2.0.0)
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Requires-Dist: scanpy (>=1.9.6,<2.0.0)
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Requires-Dist: seaborn (>=0.12.2,<0.13.0)
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Requires-Dist: tomli
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Requires-Dist: tqdm
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Project-URL: Source, https://github.com/abearab/scez
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Description-Content-Type: text/markdown
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## scez – single cell, easy mode
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[](https://github.com/abearab/scez/actions/workflows/main.yml)
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[](https://badge.fury.io/py/scez)
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[](https://pepy.tech/project/scez)
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[](https://pepy.tech/project/scez)
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### Description
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There are many tools available for single-cell RNA-seq analysis, but they often require a lot of understanding of the underlying algorithms, reading of documentation, and setting up analysis environments. This takes time and effort, and can be a barrier to entry for many projects. [Single-Cell Best Practices](https://github.com/theislab/single-cell-best-practices) is a great resource for learning about the best practices for single-cell analysis. `scez` aims to provide functionalities for single-cell analysis through definitions of analysis "tasks" and implementation of these "best practices" in a user-friendly way.
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This is more a personal effort to streamline my own analysis workflows, but I hope it can be useful to others as well.
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### Installation
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Make sure you have mamba installed in your base environment. If not, install it with:
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@@ -36,7 +49,7 @@ conda install mamba -n base -c conda-forge
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```
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Then, create a new conda environment with the provided `environment.yml` file and activate it. This will install all necessary dependencies for scez.
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```bash
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conda env create -f environment.yml
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conda env create -f https://raw.githubusercontent.com/abearab/scez/main/environment.yml
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conda activate scez
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```
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pip install scez
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```
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___
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Or, if you want to install the latest version from the repository:
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```bash
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pip install git+https://github.com/abearab/scez.git
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@@ -1,11 +1,11 @@
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scez/__init__.py,sha256=
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scez/__init__.py,sha256=3zXd7gUTFNJK-_l89LYFI-8yqkjt99dYLmZozK6qk0c,1412
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scez/diffexp.py,sha256=V8qjqpTZVaoAb-iCa3jYmPDmDBtg5AK9OqNzRow6ic0,6770
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scez/preprocess.py,sha256=3iaxACkmKQjKZdaFBLRAXz1kwkNnhbdnd_gwF8rI4nw,2572
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scez/representation.py,sha256=IW0pwa_yoKf-2a3lbtxRwLTdCjB2PkS9oN4WGCLwED0,1596
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scez/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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scez/tests/test_scez.py,sha256=hoBSYB5k1WtF1hY_kyWXw1W7NolBornmTdAng6tDpjw,452
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scez/utils.py,sha256=lPmt01JILiKoBUhhxZeyhl2CfAzailTp4dIefP4FqGQ,1955
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scez-0.1.
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scez-0.1.
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scez-0.1.
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scez-0.1.
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scez-0.1.1.dist-info/LICENSE,sha256=59TS1D5RmGh66RJikXvFoq_ZW9pGirB4zUOUXLfptJM,1071
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scez-0.1.1.dist-info/METADATA,sha256=RzrXbfCm1W6Nt5s55S54YDb-XWW2WOq7P482DG3tSf4,2930
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scez-0.1.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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scez-0.1.1.dist-info/RECORD,,
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File without changes
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File without changes
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