scdataloader 2.0.6__py3-none-any.whl → 2.0.7__py3-none-any.whl

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Files changed (6) hide show
  1. scdataloader/utils.py +11 -2
  2. {scdataloader-2.0.6.dist-info → scdataloader-2.0.7.dist-info}/METADATA +1 -1
  3. {scdataloader-2.0.6.dist-info → scdataloader-2.0.7.dist-info}/RECORD +6 -6
  4. {scdataloader-2.0.6.dist-info → scdataloader-2.0.7.dist-info}/WHEEL +0 -0
  5. {scdataloader-2.0.6.dist-info → scdataloader-2.0.7.dist-info}/entry_points.txt +0 -0
  6. {scdataloader-2.0.6.dist-info → scdataloader-2.0.7.dist-info}/licenses/LICENSE +0 -0
scdataloader/utils.py CHANGED
@@ -454,9 +454,18 @@ def _adding_scbasecamp_genes(
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  if len(species) == 0:
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  species = set(
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  bt.Organism.using("laminlabs/arc-virtual-cell-atlas").df().ontology_id
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- )
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- -set(["NCBITaxon:10090", "NCBITaxon:9606"])
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+ ) - set(["NCBITaxon:10090", "NCBITaxon:9606"])
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  species = list(species)
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+ for i in set(
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+ bt.Organism.using("laminlabs/arc-virtual-cell-atlas").df().ontology_id
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+ ) - set(bt.Organism.filter().df().ontology_id):
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+ print(i)
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+ rec = (
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+ bt.Organism.using("laminlabs/arc-virtual-cell-atlas")
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+ .filter(ontology_id=i)
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+ .first()
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+ )
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+ rec.save()
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  if len(bt.Organism.filter(ontology_id="NCBITaxon:9593")) == 0:
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  bt.Organism(
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  name="gorilla gorilla",
{scdataloader-2.0.6.dist-info → scdataloader-2.0.7.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: scdataloader
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- Version: 2.0.6
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+ Version: 2.0.7
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  Summary: a dataloader for single cell data in lamindb
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  Project-URL: repository, https://github.com/jkobject/scDataLoader
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  Author-email: jkobject <jkobject@gmail.com>
{scdataloader-2.0.6.dist-info → scdataloader-2.0.7.dist-info}/RECORD RENAMED
@@ -8,9 +8,9 @@ scdataloader/data.py,sha256=fMW1OgllPCz87si3DpkzOSoqnufgKlh8aW5rEVmeC_c,25133
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  scdataloader/datamodule.py,sha256=ojX0zr2cpGLoKGjWE1S_bHAEdwbFg0Ljl55hqTagW1k,43600
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  scdataloader/mapped.py,sha256=h9YKQ8SG9tyZL8c6_Wu5Xov5ODGK6FzVuFopz58xwN4,29887
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  scdataloader/preprocess.py,sha256=oAGMilgdIgggyp9B9c9627kdo6SCco2tnFhhIHY4-yc,39642
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- scdataloader/utils.py,sha256=2zIgmQHPVKHOFWqLX56Ihqtqci3_rOfCcOs642CPnX4,27183
12
- scdataloader-2.0.6.dist-info/METADATA,sha256=lnOF9PLih91AxcSI3L2OsD-0FH2kh3Qt2G7p6h3JESk,10314
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- scdataloader-2.0.6.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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- scdataloader-2.0.6.dist-info/entry_points.txt,sha256=VXAN1m_CjbdLJ6SKYR0sBLGDV4wvv31ri7fWWuwbpno,60
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- scdataloader-2.0.6.dist-info/licenses/LICENSE,sha256=rGy_eYmnxtbOvKs7qt5V0czSWxJwgX_MlgMyTZwDHbc,1073
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- scdataloader-2.0.6.dist-info/RECORD,,
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+ scdataloader/utils.py,sha256=Xic6QI2phQlDvYfEPhIxfL8RWiBVvdgN5BKD1U_AN6A,27509
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+ scdataloader-2.0.7.dist-info/METADATA,sha256=zQc0Czwk1aaqWMjKTWCctFXWxuwnWBg6u5KFu4ejFqY,10314
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+ scdataloader-2.0.7.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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+ scdataloader-2.0.7.dist-info/entry_points.txt,sha256=VXAN1m_CjbdLJ6SKYR0sBLGDV4wvv31ri7fWWuwbpno,60
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+ scdataloader-2.0.7.dist-info/licenses/LICENSE,sha256=rGy_eYmnxtbOvKs7qt5V0czSWxJwgX_MlgMyTZwDHbc,1073
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+ scdataloader-2.0.7.dist-info/RECORD,,