scdataloader 1.6.4__py3-none-any.whl → 1.7.0__py3-none-any.whl

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Files changed (15) hide show
  1. scdataloader/VERSION +1 -1
  2. scdataloader/__init__.py +2 -0
  3. scdataloader/__main__.py +38 -8
  4. scdataloader/collator.py +6 -2
  5. scdataloader/config.py +99 -0
  6. scdataloader/data.py +42 -35
  7. scdataloader/datamodule.py +123 -40
  8. scdataloader/mapped.py +700 -0
  9. scdataloader/preprocess.py +229 -86
  10. scdataloader/utils.py +49 -27
  11. {scdataloader-1.6.4.dist-info → scdataloader-1.7.0.dist-info}/METADATA +7 -6
  12. scdataloader-1.7.0.dist-info/RECORD +15 -0
  13. {scdataloader-1.6.4.dist-info → scdataloader-1.7.0.dist-info}/WHEEL +1 -1
  14. scdataloader-1.6.4.dist-info/RECORD +0 -14
  15. {scdataloader-1.6.4.dist-info → scdataloader-1.7.0.dist-info}/licenses/LICENSE +0 -0
{scdataloader-1.6.4.dist-info → scdataloader-1.7.0.dist-info}/METADATA RENAMED
@@ -1,23 +1,24 @@
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- Metadata-Version: 2.3
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+ Metadata-Version: 2.4
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  Name: scdataloader
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- Version: 1.6.4
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+ Version: 1.7.0
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  Summary: a dataloader for single cell data in lamindb
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  Project-URL: repository, https://github.com/jkobject/scDataLoader
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  Author-email: jkobject <jkobject@gmail.com>
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- License: MIT
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+ License-Expression: MIT
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+ License-File: LICENSE
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  Keywords: dataloader,lamindb,pytorch,scPRINT,scRNAseq
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- Requires-Python: <3.11,>=3.10
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+ Requires-Python: <3.14,>=3.10
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  Requires-Dist: anndata>=0.9.0
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  Requires-Dist: biomart>=0.9.0
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  Requires-Dist: cellxgene-census>=0.1.0
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  Requires-Dist: django>=4.0.0
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  Requires-Dist: harmonypy>=0.0.10
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  Requires-Dist: ipykernel>=6.20.0
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- Requires-Dist: lamindb[bionty]==0.76.12
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+ Requires-Dist: lamindb[bionty]==0.77.2
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  Requires-Dist: leidenalg>=0.8.0
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  Requires-Dist: lightning>=2.0.0
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  Requires-Dist: matplotlib>=3.5.0
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- Requires-Dist: numpy>=1.26.0
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+ Requires-Dist: numpy==1.26.0
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  Requires-Dist: palantir>=1.3.3
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  Requires-Dist: pandas>=2.0.0
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  Requires-Dist: scikit-misc>=0.5.0
scdataloader-1.7.0.dist-info/RECORD ADDED
@@ -0,0 +1,15 @@
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+ scdataloader/VERSION,sha256=u3Mg2DHnoVGqkBw15zJsdS-i71Ak8wdoxCMZuL7Rce0,6
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+ scdataloader/__init__.py,sha256=4sSZSnNM-gtyiB28M_FM3o8lNabmsofct9SWWry1_zA,170
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+ scdataloader/__main__.py,sha256=CcvUnvgnF2d1QQHjkIhhzeK9vgplbhdHiGMawmxhq6g,7454
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+ scdataloader/base.py,sha256=M1gD59OffRdLOgS1vHKygOomUoAMuzjpRtAfM3SBKF8,338
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+ scdataloader/collator.py,sha256=NmbMAxkFZLufWpn0yBY6d1me2nUKdV0VG11Js8rgghU,11560
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+ scdataloader/config.py,sha256=tu9hkUiU2HfaIiVzdmrjbzt73yV4zP-t8lDuJqyGcDA,6546
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+ scdataloader/data.py,sha256=K0r_RlLBza3WsWQVzybZjskKDfwFe8qMqLcJwdZ1yuw,15172
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+ scdataloader/datamodule.py,sha256=-GumOkOXDn7DJnqo2yhmPpEcIZUtw0LulFOnl3nkouw,20193
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+ scdataloader/mapped.py,sha256=u3vo7vcE4Q72qY0j7uHpZvlTTYr4yc3RaRrwE7AAhaE,27122
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+ scdataloader/preprocess.py,sha256=feaXGQYNfChbISZCWCnIZL1qwmzfwmNygbL-xVTwC0o,34595
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+ scdataloader/utils.py,sha256=MRuqbRcCkb45k_G4QCwog0C6-Az4ZcklVPn47aZJLGs,27870
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+ scdataloader-1.7.0.dist-info/METADATA,sha256=r0oXvOe1kqoRlbYJim4MTqgRADjP3t_xDaxXGrGomkM,9907
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+ scdataloader-1.7.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ scdataloader-1.7.0.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ scdataloader-1.7.0.dist-info/RECORD,,
{scdataloader-1.6.4.dist-info → scdataloader-1.7.0.dist-info}/WHEEL RENAMED
@@ -1,4 +1,4 @@
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  Wheel-Version: 1.0
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- Generator: hatchling 1.26.3
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+ Generator: hatchling 1.27.0
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  Root-Is-Purelib: true
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  Tag: py3-none-any
scdataloader-1.6.4.dist-info/RECORD DELETED
@@ -1,14 +0,0 @@
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- scdataloader/VERSION,sha256=1-dHLCYhhLoNpJuXwyP9qKDsvu4z17NNtIQF76_WVd4,6
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- scdataloader/__init__.py,sha256=5y9VzRhOAUWeYMn2MrRRRlzgdiMjRFytr7gcn-I6IkE,147
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- scdataloader/__main__.py,sha256=VXrt2IykBypnIXWydwA7NfF7LtRGc-0Khjtm5OIBNpI,6527
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- scdataloader/base.py,sha256=M1gD59OffRdLOgS1vHKygOomUoAMuzjpRtAfM3SBKF8,338
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- scdataloader/collator.py,sha256=gzHiuixUwK8JClhAbG12kgWMU_VTKkowibA-tDFpbwo,11341
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- scdataloader/config.py,sha256=rrW2DZxG4J2_pmpDbXXsaKJkpNC57w5dIlItiFbANYw,2905
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- scdataloader/data.py,sha256=1dF7B406dGYxmVb2ab6ROsaweHL-15CAcKrltuy1NIM,14912
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- scdataloader/datamodule.py,sha256=yGi0l4eY_j9IsPT_AGe196cT6ZmCHhpOpUrRPQ1wsKI,16935
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- scdataloader/preprocess.py,sha256=pH4EPrcRqH34o3t5X3A4kETiYdCZngih5SdP_PPfgOo,29178
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- scdataloader/utils.py,sha256=YLLMv_60K-TkW5kvJC7Ai7QCMleCBNVKUNrqYSzVllI,26919
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- scdataloader-1.6.4.dist-info/METADATA,sha256=OB_quKz5eCMXkhqIWkkuczKmrnFT0USYnVWqm0iL7uw,9875
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- scdataloader-1.6.4.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
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- scdataloader-1.6.4.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- scdataloader-1.6.4.dist-info/RECORD,,