saterys 0.2.7__py3-none-any.whl

saterys/nodes/PCA.py

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+# nodes/pca.py
+"""
+PCA node (per-pixel projection across bands).
+
+- Inputs:
+  * EITHER one multiband raster (bands = variables),
+  * OR a stack of single-band rasters (same grid), treated as variables.
+
+- Output:
+  * Multi-band GeoTIFF with the first k principal components (PC1..PCk), each
+    band a component score image.
+  * Plots saved to disk:
+      - Scree plot (explained variance ratio)
+      - Loadings heatmap (components x variables)
+    Paths to these PNGs are returned in payload["artifacts"].
+
+No scikit-learn dependency; PCA via NumPy SVD.
+
+Requirements: rasterio, numpy, matplotlib (for plots; optional—plots skipped if missing)
+"""
+
+from __future__ import annotations
+import os, hashlib, math
+from typing import Any, Dict, List, Tuple, Optional
+
+NAME = "raster.pca"
+DEFAULT_ARGS = {
+    # Number of components. If 0 or None, choose smallest k reaching >= variance_threshold.
+    "n_components": 0,
+    "variance_threshold": 0.99,   # only used if n_components in (0,None)
+    "standardize": True,          # center & scale by std; if False: center only
+    "sample_fraction": 0.1,       # 0< f <=1 for computing PCA basis (for speed)
+    "random_seed": 42,
+
+    # Optional variable (band) names to label loadings
+    "var_names": [],              # if empty, auto "B1","B2",...
+
+    # Output
+    "output_path": "",            # if empty: ./data/cache/pca-<hash>.tif
+    "dtype": "float32",
+    "nodata": -9999.0,
+
+    # Plots
+    "make_plots": True,
+    "plots_dir": "./data/plots",  # directory to save PNGs
+    "plot_prefix": "pca",         # filename prefix
+}
+
+# ---------------------------------------------------------------------------
+
+def _cache_dir() -> str:
+    return os.path.abspath(os.getenv("RASTER_CACHE", "./data/cache"))
+
+def _ensure_dir(p: str):
+    os.makedirs(p, exist_ok=True)
+
+def _first_nonstr_none(x, default):
+    return x if x is not None else default
+
+def _collect_upstream_rasters(inputs: Dict[str, Any]) -> List[Dict[str, Any]]:
+    out: List[Dict[str, Any]] = []
+    for v in inputs.values():
+        if isinstance(v, dict) and v.get("type") == "raster" and v.get("path"):
+            out.append(v)
+    return out
+
+def _assert_same_grid(rasters: List[Dict[str, Any]]):
+    if not rasters: return
+    r0 = rasters[0]
+    for r in rasters[1:]:
+        if r.get("crs") != r0.get("crs"): raise ValueError("PCA: CRS mismatch among inputs")
+        if r.get("transform") != r0.get("transform"): raise ValueError("PCA: transform mismatch among inputs")
+        if r.get("width") != r0.get("width") or r.get("height") != r0.get("height"):
+            raise ValueError("PCA: dimension mismatch among inputs")
+
+def _auto_name(paths: Tuple[str, ...], nvar: int) -> str:
+    h = hashlib.sha1(("|".join(paths) + f"|{nvar}").encode("utf-8")).hexdigest()[:16]
+    return f"pca-{h}.tif"
+
+# ---------------------------------------------------------------------------
+
+def run(args: Dict[str, Any], inputs: Dict[str, Any], context: Dict[str, Any]):
+    import numpy as np
+    import rasterio
+
+    rasters = _collect_upstream_rasters(inputs)
+    if not rasters:
+        raise ValueError("PCA: no upstream raster(s) found")
+
+    # --- Determine variables & read handles ---
+    # Case A: one multiband raster
+    # Case B: stack of single-band rasters (treated as variables)
+    single_multiband = False
+    if len(rasters) == 1:
+        single_multiband = True
+
+    _assert_same_grid(rasters)
+
+    # Open datasets
+    dsets = [rasterio.open(r["path"]) for r in rasters]
+    try:
+        height = dsets[0].height
+        width  = dsets[0].width
+        crs    = dsets[0].crs
+        transform = dsets[0].transform
+
+        if single_multiband:
+            nvar = dsets[0].count
+            var_paths = (rasters[0]["path"],)
+            # Read masks: valid where all bands are valid
+            # We'll build accessors to read band i (1-based)
+            def read_var(i):
+                return dsets[0].read(i, masked=True).astype("float32")
+            var_names = args.get("var_names") or [f"B{i}" for i in range(1, nvar+1)]
+        else:
+            # stack of single-band rasters as variables
+            for ds in dsets:
+                if ds.count != 1:
+                    raise ValueError("PCA: stack mode expects single-band rasters as variables")
+            nvar = len(dsets)
+            var_paths = tuple(r["path"] for r in rasters)
+            def read_var(i):
+                return dsets[i-1].read(1, masked=True).astype("float32")
+            var_names = args.get("var_names") or [f"V{i}" for i in range(1, nvar+1)]
+
+        # --- Compute valid mask: where all variables finite ---
+        vars_data = [read_var(i) for i in range(1, nvar+1)]
+        # Combine mask; np.ma has mask True where invalid
+        mask_any = None
+        for arr in vars_data:
+            mask_any = arr.mask if mask_any is None else (mask_any | arr.mask)
+        valid_mask = ~mask_any  # True where valid
+
+        # --- Compute valid mask: valid where ALL variables are finite AND unmasked ---
+        vars_data = [read_var(i) for i in range(1, nvar+1)]
+        import numpy as np
+
+        valid_mask = np.ones((height, width), dtype=bool)
+        for A in vars_data:
+            # treat both mask and non-finite values as invalid
+            finiteA = np.isfinite(A.filled(np.nan))
+            valid_mask &= (~A.mask) & finiteA
+            mA = np.ma.getmaskarray(A)               # always (H, W)
+            valid_mask &= (~mA) & finiteA
+
+        valid_idx = np.flatnonzero(valid_mask.ravel())
+        if valid_idx.size == 0:
+            raise ValueError("PCA: no valid pixels after masking non-finite values")
+
+        # sampling
+        rng = np.random.RandomState(int(args.get("random_seed", 42)))
+        frac = float(args.get("sample_fraction", 0.1))
+        frac = 1.0 if not (0.0 < frac <= 1.0) else frac
+        ns = max(1, int(valid_idx.size * frac))
+        sample_idx = rng.choice(valid_idx, size=ns, replace=False)
+
+        # Build sample matrix and sanitize
+        Xs = np.empty((sample_idx.size, nvar), dtype="float32")
+        for j, A in enumerate(vars_data):
+            v = A.filled(np.nan).ravel()[sample_idx]
+            Xs[:, j] = v
+
+        # Drop any rows with NaN/Inf (paranoid)
+        finite_rows = np.all(np.isfinite(Xs), axis=1)
+        Xs = Xs[finite_rows, :]
+        if Xs.shape[0] == 0:
+            # fallback: resample all valid pixels
+            sample_idx = valid_idx
+            Xs = np.empty((sample_idx.size, nvar), dtype="float32")
+            for j, A in enumerate(vars_data):
+                v = A.filled(np.nan).ravel()[sample_idx]
+                Xs[:, j] = v
+            finite_rows = np.all(np.isfinite(Xs), axis=1)
+            Xs = Xs[finite_rows, :]
+            if Xs.shape[0] == 0:
+                raise ValueError("PCA: all valid locations contain non-finite values across variables")
+
+
+        # Center/standardize
+        standardize = bool(args.get("standardize", True))
+        mean_ = np.nanmean(Xs, axis=0).astype("float32")
+        std_  = np.nanstd (Xs, axis=0).astype("float32")
+        std_[std_ == 0] = 1.0
+
+        Xs0 = Xs - mean_[None, :]
+        if standardize:
+            Xs0 = Xs0 / std_[None, :]
+
+        # PCA via SVD on sample
+        # Xs0 = U S Vt ; columns of V (rows of Vt) are PCs (loadings)
+        U, S, Vt = np.linalg.svd(Xs0, full_matrices=False)
+        # explained variance
+        n_samples = Xs0.shape[0]
+        ev = (S ** 2) / max(1, (n_samples - 1))
+        evr = ev / np.sum(ev)
+
+        # decide number of components
+        n_components = int(args.get("n_components") or 0)
+        if n_components <= 0:
+            thresh = float(args.get("variance_threshold", 0.99))
+            cumulative = np.cumsum(evr)
+            n_components = int(np.searchsorted(cumulative, thresh) + 1)
+        n_components = max(1, min(n_components, nvar))
+
+        # PCs to keep
+        Vt_k = Vt[:n_components, :]   # (k, nvar)
+        loadings = Vt_k.astype("float32")  # rows are components
+
+        # --- Project FULL image into k components (chunked to save RAM) ---
+        # For each variable, build centered/scaled array
+        # We'll compute scores = (X - mean)/std @ V (vars x comps), respecting mask
+        out_dtype = str(args.get("dtype", "float32")).lower()
+        if out_dtype not in ("float32", "float64"):
+            out_dtype = "float32"
+        nodata_val = float(args.get("nodata", -9999.0))
+
+        # Prepare output path
+        out_path = (args.get("output_path") or "").strip()
+        if not out_path:
+            cache_root = _cache_dir()
+            _ensure_dir(cache_root)
+            out_path = os.path.join(cache_root, _auto_name(var_paths, nvar))
+        else:
+            _ensure_dir(os.path.dirname(os.path.abspath(out_path)))
+        out_path = os.path.abspath(out_path)
+
+        # Create output dataset
+        profile = dsets[0].profile
+        profile.update(
+            driver="GTiff",
+            height=height,
+            width=width,
+            count=n_components,
+            dtype=out_dtype,
+            crs=crs,
+            transform=transform,
+            nodata=nodata_val,
+            compress="deflate",
+            tiled=True,
+            blockxsize=min(512, width),
+            blockysize=min(512, height),
+        )
+
+        with rasterio.open(out_path, "w", **profile) as dst:
+            # Process by windows/blocks
+            # We'll iterate in chunks of rows to keep memory in check
+            rows_per_chunk = max(64, min(height, 512))
+            for row0 in range(0, height, rows_per_chunk):
+                row1 = min(height, row0 + rows_per_chunk)
+                h = row1 - row0
+                # read window for all variables
+                Xwin = np.empty((h * width, nvar), dtype="float32")
+                valid_win = None
+                for j, A in enumerate(vars_data):
+                    win = np.ma.array(A[row0:row1, :], copy=False)
+                    m = np.ma.getmaskarray(win)              # shape (h, width)
+
+                    if valid_win is None:
+                        valid_win = ~m                       # shape (h, width)
+                    else:
+                        valid_win &= ~m
+
+                    Xwin[:, j] = win.filled(np.nan).reshape(-1)
+
+                # standardize window
+                Xwin -= mean_[None, :]
+                if standardize:
+                    Xwin /= std_[None, :]
+
+                # compute scores only where valid across all variables
+                vflat = valid_win.reshape(-1)
+                scores = np.full((h * width, n_components), np.nan, dtype="float32")
+                if np.any(vflat):
+                    Xv = Xwin[vflat, :]   # (nv, nvar)
+                    Sv = np.dot(Xv, loadings.T)  # (nv, k)
+                    scores[vflat, :] = Sv.astype("float32")
+
+                # write each component band, filling nodata where NaN
+                for k in range(n_components):
+                    band = scores[:, k].reshape(h, width)
+                    band = np.where(np.isfinite(band), band, nodata_val).astype(out_dtype)
+                    dst.write(band, k + 1)
+                    if row0 == 0:
+                        dst.set_band_description(k + 1, f"PC{k+1}")
+
+        # --- Save plots to disk (optional) ---
+        artifacts: List[str] = []
+        make_plots = bool(args.get("make_plots", True))
+        if make_plots:
+            try:
+                import matplotlib
+                matplotlib.use("Agg")
+                import matplotlib.pyplot as plt  # type: ignore
+
+                plots_dir = os.path.abspath(args.get("plots_dir") or "./data/plots")
+                _ensure_dir(plots_dir)
+                prefix = str(args.get("plot_prefix") or "pca")
+
+                # Scree plot
+                scree_path = os.path.join(plots_dir, f"{prefix}-scree.png")
+                fig, ax = plt.subplots(figsize=(5.2, 3.2), dpi=120)
+                ax.plot(range(1, len(evr) + 1), evr, marker="o")
+                ax.set_title("PCA Scree (explained variance ratio)")
+                ax.set_xlabel("Component")
+                ax.set_ylabel("Explained variance ratio")
+                ax.grid(True, alpha=0.3)
+                fig.tight_layout()
+                fig.savefig(scree_path)
+                plt.close(fig)
+                artifacts.append(scree_path)
+
+                # Loadings heatmap (k x nvar)
+                load_path = os.path.join(plots_dir, f"{prefix}-loadings.png")
+                fig, ax = plt.subplots(figsize=(max(4.0, 0.5 * nvar), max(3.0, 0.5 * n_components)), dpi=120)
+                im = ax.imshow(loadings, aspect="auto", cmap="coolwarm", vmin=-1, vmax=1)
+                ax.set_title("PCA Loadings")
+                ax.set_xlabel("Variables")
+                ax.set_ylabel("Components")
+                ax.set_xticks(range(nvar))
+                ax.set_xticklabels(var_names, rotation=45, ha="right", fontsize=8)
+                ax.set_yticks(range(n_components))
+                ax.set_yticklabels([f"PC{i+1}" for i in range(n_components)])
+                fig.colorbar(im, ax=ax, orientation="vertical", label="loading")
+                fig.tight_layout()
+                fig.savefig(load_path)
+                plt.close(fig)
+                artifacts.append(load_path)
+            except Exception:
+                # If matplotlib is missing or fails, skip plots silently
+                pass
+
+        # --- Return payload ---
+        payload: Dict[str, Any] = {
+            "type": "raster",
+            "driver": "GTiff",
+            "path": out_path,
+            "width": int(width),
+            "height": int(height),
+            "count": int(n_components),
+            "dtype": str(profile["dtype"]),
+            "crs": str(crs) if crs else None,
+            "transform": [transform.a, transform.b, transform.c,
+                          transform.d, transform.e, transform.f],
+            "bounds": [float(dsets[0].bounds.left), float(dsets[0].bounds.bottom),
+                       float(dsets[0].bounds.right), float(dsets[0].bounds.top)],
+            "nodata": float(profile.get("nodata")) if profile.get("nodata") is not None else None,
+            "band_names": [f"PC{i+1}" for i in range(n_components)],
+            "meta": {
+                "source": "pca",
+                "mode": "multiband" if single_multiband else "stack",
+                "inputs": [os.path.abspath(p) for p in var_paths] if isinstance(var_paths, tuple) else [os.path.abspath(p) for p in var_paths],
+                "n_variables": int(nvar),
+                "n_components": int(n_components),
+                "standardize": bool(args.get("standardize", True)),
+                "explained_variance": [float(x) for x in ev[:n_components].tolist()],
+                "explained_variance_ratio": [float(x) for x in evr[:n_components].tolist()],
+                "var_names": [str(v) for v in var_names],
+            },
+        }
+        if make_plots and 'artifacts' not in payload:
+            payload["artifacts"] = artifacts  # list of PNG paths (if created)
+
+        return payload
+
+    finally:
+        for ds in dsets:
+            try:
+                ds.close()
+            except Exception:
+                pass

saterys/nodes/hello.py

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+NAME = "hello"
+DEFAULT_ARGS = {"name": "world"}
+
+def run(args, inputs, context):
+    name = str(args.get("name", "world"))
+    return {"text": f"hello {name}"}

saterys/nodes/input.py

@@ -0,0 +1,39 @@
+# nodes/raster_input.py
+"""
+Exposes a local GeoTIFF (or any raster readable by rasterio) as a pipeline input.
+"""
+
+NAME = "raster.input"
+DEFAULT_ARGS = {
+    "path": "/absolute/path/to/file.tif"  # user sets this in the UI
+}
+
+def run(args, inputs, context):
+    import os
+    import rasterio
+    from rasterio.coords import BoundingBox
+
+    path = str(args.get("path", "")).strip()
+    if not path:
+        raise ValueError("raster.input: 'path' is required")
+    if not os.path.exists(path):
+        raise FileNotFoundError(f"Raster file not found: {path}")
+
+    with rasterio.open(path) as ds:
+        bb: BoundingBox = ds.bounds
+        return {
+            "type": "raster",
+            "driver": ds.driver,
+            "path": os.path.abspath(path),
+            "width": ds.width,
+            "height": ds.height,
+            "count": ds.count,
+            "dtype": ds.dtypes[0] if ds.count else None,
+            "crs": str(ds.crs) if ds.crs else None,
+            "transform": [ds.transform.a, ds.transform.b, ds.transform.c,
+                          ds.transform.d, ds.transform.e, ds.transform.f],
+            "bounds": [bb.left, bb.bottom, bb.right, bb.top],
+            "nodata": ds.nodata,
+            "band_names": ds.descriptions if ds.descriptions else None,
+            "meta": {"source": "local"},
+        }

saterys/nodes/script.py

@@ -0,0 +1,13 @@
+NAME = "script"
+DEFAULT_ARGS = {"code": "print('hello from script')"}
+
+def run(args, inputs, context):
+    code = args.get("code", "")
+    import io, contextlib
+    buf = io.StringIO()
+    ns = {"inputs": inputs, "context": context}  # tiny “globals”
+    with contextlib.redirect_stdout(buf):
+        exec(code, ns, ns)
+    out = buf.getvalue()
+    # if user put a value into ns["result"], return it too
+    return {"text": out.strip(), "result": ns.get("result")}

saterys/nodes/sum.py

@@ -0,0 +1,7 @@
+NAME = "sum"
+DEFAULT_ARGS = {"nums": [1, 2, 3]}
+
+def run(args, inputs, context):
+    nums = args.get("nums", [])
+    total = sum(float(x) for x in nums)
+    return {"text": str(total), "value": total}

saterys/static/assets/ContrastTheme-8vl10reL.js

@@ -0,0 +1 @@
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saterys/static/assets/Controls-BuZt2rJO.js

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saterys/static/assets/DrawerController-CunOJ5Gd.js

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saterys/static/assets/DrawerController-ZXfKNTdC.css

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saterys/static/assets/Icon-BZoXfbBu.js

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+		top: ${j+H*q}px;
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saterys/static/assets/ThemeToggle-CmShuKPJ.js

@@ -0,0 +1 @@
+import{F as W,S as A,i as k,s as w,n as p,d as G,G as z,H as O,t as u,a as v,b as R,r as d,l as N,I as y,e as _,J,v as K,c as E,o as M,K as T}from"./index-CwCTxci7.js";function q(o){return o&&typeof o.subscribe=="function"}function I(o){const e={};for(const t in o){const l=o[t];if(t==="nodes"&&typeof l=="object"&&typeof l.getAll=="function"){const a=l.getAll();e[t]=a.map(i=>I(i))}else if(q(l)){const a=W(l);e[t]=typeof a=="object"&&a!==null?I(a):a}else typeof l=="object"&&l!==null?e[t]=I(l):e[t]=l}return e}function D(o,e){return e instanceof DOMRectReadOnly?{x:e.x,y:e.y,width:e.width,height:e.height}:e}function F(o){console.log("graph state object:",o);const e=I(o),t=JSON.stringify(e,D);return localStorage.setItem("state",t),t}function H(o){let e,t,l,a=(o[6]===o[0]?o[2]:o[1])+"",i,f,m,g,h;return{c(){e=_("div"),t=_("button"),l=_("span"),i=J(a),f=K(),m=_("button"),m.textContent="Save",E(l,"class","material-symbols-outlined svelte-izjv92"),E(t,"class","svelte-izjv92"),E(m,"class","save-button NW svelte-izjv92"),E(e,"class","controls-wrapper svelte-izjv92"),u(e,"SW",o[3]==="SW"),u(e,"NE",o[3]==="NE"),u(e,"SE",o[3]==="SE"),u(e,"NW",o[3]==="NW"),v(e,"--prop-theme-toggle-color",o[4]),v(e,"--prop-theme-toggle-text-color",o[5])},m(s,r){R(s,e,r),d(e,t),d(t,l),d(l,i),d(e,f),d(e,m),g||(h=[N(t,"mousedown",y(o[8])),N(t,"touchstart",y(o[8]),{passive:!0}),N(m,"click",o[10])],g=!0)},p(s,[r]){r&71&&a!==(a=(s[6]===s[0]?s[2]:s[1])+"")&&O(i,a),r&8&&u(e,"SW",s[3]==="SW"),r&8&&u(e,"NE",s[3]==="NE"),r&8&&u(e,"SE",s[3]==="SE"),r&8&&u(e,"NW",s[3]==="NW"),r&16&&v(e,"--prop-theme-toggle-color",s[4]),r&32&&v(e,"--prop-theme-toggle-text-color",s[5])},i:p,o:p,d(s){s&&G(e),g=!1,z(h)}}}function V(o,e,t){console.log("Componente ThemeToggle.svelte");let{main:l="light"}=e,{alt:a="dark"}=e,{mainIcon:i="light_mode"}=e,{altIcon:f="dark_mode"}=e,{corner:m="NE"}=e,{bgColor:g=null}=e,{iconColor:h=null}=e,s=l;function r(){const n=document.documentElement.getAttribute("svelvet-theme");let c;!n||n===l?c=a:c=l,t(6,s=c),document.documentElement.setAttribute("svelvet-theme",c),localStorage.setItem("currentTheme",c)}M(()=>{const n=localStorage.getItem("currentTheme");n?(document.documentElement.setAttribute("svelvet-theme",n),t(6,s=n)):(document.documentElement.setAttribute("svelvet-theme",l),t(6,s=l));const c=localStorage.getItem("state");if(c){console.log("Al renderizar la aplicacion este componente se ejecuta en este orden");const b=JSON.parse(c);if(b&&b.nodes){const C=W(T);console.log(C),C.set("G-1",b),console.log("Restaurando nodos:",b.nodes)}}});let S;T.subscribe(n=>{t(7,S=n.get("G-1")),console.log("Graph from store:",S)});const j=()=>{F(S)};return o.$$set=n=>{"main"in n&&t(0,l=n.main),"alt"in n&&t(9,a=n.alt),"mainIcon"in n&&t(1,i=n.mainIcon),"altIcon"in n&&t(2,f=n.altIcon),"corner"in n&&t(3,m=n.corner),"bgColor"in n&&t(4,g=n.bgColor),"iconColor"in n&&t(5,h=n.iconColor)},[l,i,f,m,g,h,s,S,r,a,j]}class L extends A{constructor(e){super(),k(this,e,V,H,w,{main:0,alt:9,mainIcon:1,altIcon:2,corner:3,bgColor:4,iconColor:5})}}export{L as default};