sarpyx 0.1.5__py3-none-any.whl → 0.1.6__py3-none-any.whl

docs/examples/advanced/batch_processing.py

@@ -51,7 +51,7 @@ from sarpyx.sla import SLAProcessor
 from sarpyx.utils import io as sarpyx_io
 from sarpyx.utils import viz as sarpyx_viz
 from sarpyx.science import indices
-from sarpyx.snap import engine as snap_engine
+from sarpyx.snapflow import engine as snap_engine
 
 # Configure logging
 logging.basicConfig(level=logging.INFO, format='%(asctime)s - %(levelname)s - %(message)s')

docs/examples/advanced/custom_processing_chains.py

@@ -42,7 +42,7 @@ from sarpyx.sla import SLAProcessor
 from sarpyx.utils import io as sarpyx_io
 from sarpyx.utils import viz as sarpyx_viz
 from sarpyx.science import indices
-from sarpyx.snap import engine as snap_engine
+from sarpyx.snapflow import engine as snap_engine
 
 # Configure logging
 logging.basicConfig(level=logging.INFO)

docs/examples/advanced/performance_optimization.py

@@ -50,7 +50,7 @@ from sarpyx.sla import SLAProcessor
 from sarpyx.utils import io as sarpyx_io
 from sarpyx.utils import viz as sarpyx_viz
 from sarpyx.science import indices
-from sarpyx.snap import engine as snap_engine
+from sarpyx.snapflow import engine as snap_engine
 
 # Optional GPU acceleration imports
 try:

docs/examples/basic/snap_integration.py

@@ -16,7 +16,7 @@ import matplotlib.pyplot as plt
 from pathlib import Path
 
 try:
-    from sarpyx.snap import GPT, SNAPProcessor
+    from sarpyx.snapflow import GPT, SNAPProcessor
     from sarpyx.utils import visualization
 except ImportError as e:
     print(f"Error importing SARPYX: {e}")

docs/examples/intermediate/quality_assessment.py

@@ -34,7 +34,7 @@ from sarpyx.sla import SLAProcessor
 from sarpyx.utils import io as sarpyx_io
 from sarpyx.utils import viz as sarpyx_viz
 from sarpyx.science import indices
-from sarpyx.snap import engine as snap_engine
+from sarpyx.snapflow import engine as snap_engine
 
 # Configure logging
 logging.basicConfig(level=logging.INFO)

outputs/baseline/20260205-234828/__init__.py

@@ -0,0 +1,33 @@
+"""
+SAR Processing Module.
+
+This module provides comprehensive SAR (Synthetic Aperture Radar) processing
+capabilities including focusing algorithms, autofocus methods, data I/O,
+and various processing utilities.
+
+Submodules:
+    core: Core processing algorithms (focus, decode, transforms)
+    autofocus: Autofocus algorithms and quality metrics
+    algorithms: High-level processing algorithms (RDA, back-projection)
+    data: Data readers, writers, and format converters
+    utils: Processing utilities and helper functions
+    
+Legacy:
+    AutoFocusNet: Original AutoFocusNet implementation (maintained for compatibility)
+"""
+
+# Import main submodules
+from . import core
+from . import algorithms
+from . import data
+from . import utils
+
+
+__all__ = [
+    'core',
+    'algorithms', 
+    'data',
+    'utils',
+]
+
+__version__ = "0.1.5"

outputs/baseline/20260205-234828/main.py

@@ -0,0 +1,493 @@
+#!/usr/bin/env python3
+"""
+SARPyX Command Line Interface.
+
+Main entry point for all sarpyx CLI tools.
+"""
+
+import argparse
+import sys
+from typing import List
+
+
+def create_main_parser() -> argparse.ArgumentParser:
+    """
+    Create the main argument parser with subcommands.
+    
+    Returns:
+        Configured ArgumentParser instance.
+    """
+    parser = argparse.ArgumentParser(
+        prog='sarpyx',
+        description='SARPyX: A comprehensive toolkit for SAR data processing',
+        formatter_class=argparse.RawDescriptionHelpFormatter,
+        epilog="""
+Available commands:
+  decode     Decode Sentinel-1 Level-0 products to zarr format
+  focus      Focus SAR data using Range-Doppler Algorithm
+  shipdet    Ship detection using SNAP GPT engine
+  unzip      Extract SAR data from zip archives
+  upload     Upload data to Hugging Face Hub
+  worldsar   Process SAR products with SNAP GPT pipelines and tiling
+  
+Examples:
+  sarpyx decode --input /path/to/file.dat --output /path/to/output
+  sarpyx focus --input /path/to/data.zarr --output /path/to/output
+  sarpyx shipdet --product-path /path/to/S1A_*.SAFE --outdir /path/to/output
+  sarpyx unzip --input /path/to/file.zip --output /path/to/output
+  sarpyx upload --folder /path/to/folder --repo username/dataset-name
+  sarpyx worldsar --input /path/to/product --output /path/to/output \\
+                 --cuts-outdir /path/to/tiles --product-wkt "POLYGON ((...))" \\
+                 --prod-mode S1TOPS
+  
+For command-specific help:
+  sarpyx <command> --help
+"""
+    )
+    
+    parser.add_argument(
+        '--version',
+        action='version',
+        version='sarpyx-cli 0.1.5'
+    )
+    
+    # Create subparsers for different commands
+    subparsers = parser.add_subparsers(
+        dest='command',
+        help='Available commands',
+        metavar='<command>'
+    )
+    
+    # Decode subcommand
+    decode_parser = subparsers.add_parser(
+        'decode',
+        help='Decode Sentinel-1 Level-0 products to zarr format',
+        description='Decode S1 L0 products (.dat files or .SAFE folders) to zarr format'
+    )
+    _add_decode_arguments(decode_parser)
+    
+    # Focus subcommand
+    focus_parser = subparsers.add_parser(
+        'focus',
+        help='Focus SAR data using Range-Doppler Algorithm',
+        description='Focus SAR data from zarr files using CoarseRDA processor'
+    )
+    _add_focus_arguments(focus_parser)
+    
+    # Ship detection subcommand
+    shipdet_parser = subparsers.add_parser(
+        'shipdet',
+        help='Ship detection using SNAP GPT engine',
+        description='Detect ships in SAR data using adaptive thresholding and object discrimination'
+    )
+    _add_shipdet_arguments(shipdet_parser)
+    
+    # Unzip subcommand
+    unzip_parser = subparsers.add_parser(
+        'unzip',
+        help='Extract SAR data from zip archives',
+        description='Extract zip files containing SAR data'
+    )
+    _add_unzip_arguments(unzip_parser)
+    
+    # Upload subcommand
+    upload_parser = subparsers.add_parser(
+        'upload',
+        help='Upload data to Hugging Face Hub',
+        description='Upload processed SAR data to Hugging Face Hub'
+    )
+    _add_upload_arguments(upload_parser)
+
+    # WorldSAR subcommand
+    worldsar_parser = subparsers.add_parser(
+        'worldsar',
+        help='Process SAR products with SNAP GPT pipelines and tiling',
+        description='Process SAR products from multiple missions and generate tiles'
+    )
+    _add_worldsar_arguments(worldsar_parser)
+    
+    return parser
+
+
+def _add_decode_arguments(parser: argparse.ArgumentParser) -> None:
+    """
+    Add arguments for the decode subcommand.
+    
+    Args:
+        parser: The subparser for decode command.
+    """
+    parser.add_argument(
+        '--input',
+        type=str,
+        required=True,
+        help='Path to .dat file or .SAFE folder'
+    )
+    parser.add_argument(
+        '--output',
+        type=str,
+        default='./decoded_data',
+        help='Output directory for decoded files (default: ./decoded_data)'
+    )
+    parser.add_argument(
+        '--verbose',
+        '-v',
+        action='store_true',
+        help='Enable verbose logging'
+    )
+    parser.add_argument(
+        '--debug',
+        action='store_true',
+        help='Enable debug logging'
+    )
+
+
+def _add_focus_arguments(parser: argparse.ArgumentParser) -> None:
+    """
+    Add arguments for the focus subcommand.
+    
+    Args:
+        parser: The subparser for focus command.
+    """
+    parser.add_argument(
+        '--input',
+        type=str,
+        required=True,
+        help='Input zarr file path'
+    )
+    parser.add_argument(
+        '--output',
+        type=str,
+        default='./focused_data',
+        help='Output directory (default: ./focused_data)'
+    )
+    parser.add_argument(
+        '--slice-height',
+        type=int,
+        default=15000,
+        help='Slice height for processing (default: 15000)'
+    )
+    parser.add_argument(
+        '--verbose',
+        '-v',
+        action='store_true',
+        help='Enable verbose output'
+    )
+    parser.add_argument(
+        '--keep-tmp',
+        action='store_true',
+        help='Keep temporary files after processing'
+    )
+
+
+def _add_shipdet_arguments(parser: argparse.ArgumentParser) -> None:
+    """
+    Add arguments for the shipdet subcommand.
+    
+    Args:
+        parser: The subparser for shipdet command.
+    """
+    # Required arguments
+    parser.add_argument(
+        '--product-path',
+        type=str,
+        required=True,
+        help='Path to the SAR product (.SAFE directory or zip file)'
+    )
+    parser.add_argument(
+        '--outdir',
+        type=str,
+        required=True,
+        help='Output directory for processed data'
+    )
+    
+    # Optional processing arguments
+    parser.add_argument(
+        '--format',
+        type=str,
+        default='BEAM-DIMAP',
+        choices=['BEAM-DIMAP', 'GeoTIFF', 'NetCDF4-CF', 'ENVI', 'HDF5'],
+        help='Output format (default: BEAM-DIMAP)'
+    )
+    parser.add_argument(
+        '--gpt-path',
+        type=str,
+        default=None,
+        help='Path to GPT executable (default: None - use system PATH)'
+    )
+    
+    # Calibration arguments
+    parser.add_argument(
+        '--output-complex',
+        action='store_true',
+        help='Output complex values for calibration (default: False)'
+    )
+    parser.add_argument(
+        '--polarizations',
+        type=str,
+        nargs='+',
+        default=['VV'],
+        choices=['VV', 'VH', 'HH', 'HV'],
+        help='Polarizations to process (default: VV)'
+    )
+    
+    # Adaptive thresholding arguments
+    parser.add_argument(
+        '--pfa',
+        type=float,
+        default=6.5,
+        help='Probability of false alarm for adaptive thresholding (default: 6.5)'
+    )
+    parser.add_argument(
+        '--background-window-m',
+        type=float,
+        default=800.0,
+        help='Background window size in meters (default: 800.0)'
+    )
+    parser.add_argument(
+        '--guard-window-m',
+        type=float,
+        default=500.0,
+        help='Guard window size in meters (default: 500.0)'
+    )
+    parser.add_argument(
+        '--target-window-m',
+        type=float,
+        default=50.0,
+        help='Target window size in meters (default: 50.0)'
+    )
+    
+    # Object discrimination arguments
+    parser.add_argument(
+        '--min-target-m',
+        type=float,
+        default=50.0,
+        help='Minimum target size in meters (default: 50.0)'
+    )
+    parser.add_argument(
+        '--max-target-m',
+        type=float,
+        default=600.0,
+        help='Maximum target size in meters (default: 600.0)'
+    )
+    
+    # Processing options
+    parser.add_argument(
+        '--skip-calibration',
+        action='store_true',
+        help='Skip calibration step (default: False)'
+    )
+    parser.add_argument(
+        '--skip-discrimination',
+        action='store_true',
+        help='Skip object discrimination step (default: False)'
+    )
+    parser.add_argument(
+        '--verbose',
+        '-v',
+        action='store_true',
+        help='Enable verbose output (default: False)'
+    )
+
+
+def _add_unzip_arguments(parser: argparse.ArgumentParser) -> None:
+    """
+    Add arguments for the unzip subcommand.
+    
+    Args:
+        parser: The subparser for unzip command.
+    """
+    parser.add_argument(
+        '--input',
+        type=str,
+        required=True,
+        help='Path to zip file or directory containing zip files'
+    )
+    parser.add_argument(
+        '--output',
+        type=str,
+        default='./extracted_data',
+        help='Output directory for extracted files (default: ./extracted_data)'
+    )
+    parser.add_argument(
+        '--recursive',
+        '-r',
+        action='store_true',
+        help='Recursively search for zip files in subdirectories'
+    )
+    parser.add_argument(
+        '--verbose',
+        '-v',
+        action='store_true',
+        help='Enable verbose logging'
+    )
+
+
+def _add_upload_arguments(parser: argparse.ArgumentParser) -> None:
+    """
+    Add arguments for the upload subcommand.
+    
+    Args:
+        parser: The subparser for upload command.
+    """
+    parser.add_argument(
+        '--folder',
+        type=str,
+        required=True,
+        help='Path to the folder to upload'
+    )
+    parser.add_argument(
+        '--repo',
+        type=str,
+        required=True,
+        help='Repository ID in format username/repo-name'
+    )
+    parser.add_argument(
+        '--repo-type',
+        type=str,
+        default='dataset',
+        choices=['dataset', 'model', 'space'],
+        help='Type of repository (default: dataset)'
+    )
+    parser.add_argument(
+        '--verbose',
+        '-v',
+        action='store_true',
+        help='Enable verbose logging'
+    )
+
+
+def _add_worldsar_arguments(parser: argparse.ArgumentParser) -> None:
+    """
+    Add arguments for the worldsar subcommand.
+    
+    Args:
+        parser: The subparser for worldsar command.
+    """
+    parser.add_argument(
+        '--input',
+        '-i',
+        dest='product_path',
+        type=str,
+        required=True,
+        help='Path to the input SAR product.'
+    )
+    parser.add_argument(
+        '--output',
+        '-o',
+        dest='output_dir',
+        type=str,
+        required=True,
+        help='Directory to save the processed output.'
+    )
+    parser.add_argument(
+        '--cuts-outdir',
+        '--cuts_outdir',
+        dest='cuts_outdir',
+        type=str,
+        required=True,
+        help='Where to store the tiles after extraction.'
+    )
+    parser.add_argument(
+        '--product-wkt',
+        '--product_wkt',
+        dest='product_wkt',
+        type=str,
+        required=True,
+        help='WKT string defining the product region of interest.'
+    )
+    parser.add_argument(
+        '--prod-mode',
+        '--prod_mode',
+        dest='prod_mode',
+        type=str,
+        required=True,
+        help='Product mode: ["S1TOPS", "S1STRIP", "BM", "NISAR", "TSX", "CSG", "ICE"].'
+    )
+    parser.add_argument(
+        '--gpt-path',
+        dest='gpt_path',
+        type=str,
+        default=None,
+        help='Override GPT executable path (default: gpt_path env var).'
+    )
+    parser.add_argument(
+        '--grid-path',
+        dest='grid_path',
+        type=str,
+        default=None,
+        help='Override grid GeoJSON path (default: grid_path env var).'
+    )
+    parser.add_argument(
+        '--db-dir',
+        dest='db_dir',
+        type=str,
+        default=None,
+        help='Override database output directory (default: db_dir env var).'
+    )
+    parser.add_argument(
+        '--gpt-memory',
+        dest='gpt_memory',
+        type=str,
+        default=None,
+        help='Override GPT Java heap (e.g., 24G).'
+    )
+    parser.add_argument(
+        '--gpt-parallelism',
+        dest='gpt_parallelism',
+        type=int,
+        default=None,
+        help='Override GPT parallelism (number of tiles).'
+    )
+
+
+def main() -> None:
+    """
+    Main entry point for sarpyx CLI.
+    """
+    parser = create_main_parser()
+    args = parser.parse_args()
+    
+    # Check if a command was provided
+    if args.command is None:
+        parser.print_help()
+        sys.exit(1)
+    
+    # Route to appropriate command handler
+    original_argv = sys.argv.copy()
+    
+    try:
+        if args.command == 'decode':
+            from .decode import main as decode_main
+            sys.argv = ['sarpyx-decode'] + [arg for arg in original_argv[2:]]
+            decode_main()
+        elif args.command == 'focus':
+            from .focus import main as focus_main
+            sys.argv = ['sarpyx-focus'] + [arg for arg in original_argv[2:]]
+            focus_main()
+        elif args.command == 'shipdet':
+            from .shipdet import main as shipdet_main
+            sys.argv = ['sarpyx-shipdet'] + [arg for arg in original_argv[2:]]
+            shipdet_main()
+        elif args.command == 'unzip':
+            from .unzip import main as unzip_main
+            sys.argv = ['sarpyx-unzip'] + [arg for arg in original_argv[2:]]
+            unzip_main()
+        elif args.command == 'upload':
+            from .upload import main as upload_main
+            sys.argv = ['sarpyx-upload'] + [arg for arg in original_argv[2:]]
+            upload_main()
+        elif args.command == 'worldsar':
+            from .worldsar import main as worldsar_main
+            sys.argv = ['sarpyx-worldsar'] + [arg for arg in original_argv[2:]]
+            worldsar_main()
+        else:
+            print(f'Unknown command: {args.command}', file=sys.stderr)
+            sys.exit(1)
+    except SystemExit as e:
+        sys.exit(e.code)
+    finally:
+        sys.argv = original_argv
+
+
+if __name__ == '__main__':
+    main()

outputs/final/20260205-234851/__init__.py

@@ -0,0 +1,33 @@
+"""
+SAR Processing Module.
+
+This module provides comprehensive SAR (Synthetic Aperture Radar) processing
+capabilities including focusing algorithms, autofocus methods, data I/O,
+and various processing utilities.
+
+Submodules:
+    core: Core processing algorithms (focus, decode, transforms)
+    autofocus: Autofocus algorithms and quality metrics
+    algorithms: High-level processing algorithms (RDA, back-projection)
+    data: Data readers, writers, and format converters
+    utils: Processing utilities and helper functions
+    
+Legacy:
+    AutoFocusNet: Original AutoFocusNet implementation (maintained for compatibility)
+"""
+
+# Import main submodules
+from . import core
+from . import algorithms
+from . import data
+from . import utils
+
+
+__all__ = [
+    'core',
+    'algorithms', 
+    'data',
+    'utils',
+]
+
+__version__ = "0.1.6"