sapiopycommons 2025.9.5rc727__py3-none-any.whl → 2025.9.8a728__py3-none-any.whl

sapiopycommons/callbacks/callback_util.py

@@ -1765,11 +1765,8 @@ class CallbackUtil:
             blank_result_handling = BlankResultHandling.REPEAT
         def not_blank_func(r: list[DataRecord]) -> bool:
             return bool(r)
-        response: list[DataRecord] = self.__send_dialog_blank_results(request,
-                                                                      self.callback.show_input_selection_dialog,
-                                                                      not_blank_func, blank_result_handling,
-                                                                      repeat_message, cancel_message)
-        return self.rec_handler.wrap_models(response, wrapper_type)
+        return self.__send_dialog_blank_results(request, self.callback.show_input_selection_dialog, not_blank_func,
+                                                blank_result_handling, repeat_message, cancel_message)
 
     # FR-47690: Deprecated the require_authentication parameter.
     # noinspection PyUnusedLocal
@@ -1815,8 +1812,7 @@ class CallbackUtil:
         return response
 
     def request_file(self, title: str, exts: Iterable[str] | None = None,
-                     show_image_editor: bool = False, show_camera_button: bool = False,
-                     *, enforce_file_extensions: bool = True) -> tuple[str, bytes]:
+                     show_image_editor: bool = False, show_camera_button: bool = False) -> tuple[str, bytes]:
         """
         Request a single file from the user.
 
@@ -1826,8 +1822,6 @@ class CallbackUtil:
         :param show_image_editor: Whether the user will see an image editor when image is uploaded in this file prompt.
         :param show_camera_button: Whether the user will be able to use camera to take a picture as an upload request,
             rather than selecting an existing file.
-        :param enforce_file_extensions: If true, then the file extensions provided in the exts parameter will be
-            enforced. If false, then the user may upload any file type.
         :return: The file name and bytes of the uploaded file.
         """
         # If no extensions were provided, use an empty list for the extensions instead.
@@ -1847,12 +1841,11 @@ class CallbackUtil:
             file_path: str = self.__send_dialog(request, self.callback.show_file_dialog, data_sink=do_consume)
 
         # Verify that each of the file given matches the expected extension(s).
-        self.__verify_file(file_path, sink.data, exts if enforce_file_extensions else None)
+        self.__verify_file(file_path, sink.data, exts)
         return file_path, sink.data
 
     def request_files(self, title: str, exts: Iterable[str] | None = None,
-                      show_image_editor: bool = False, show_camera_button: bool = False,
-                      *, enforce_file_extensions: bool = True) -> dict[str, bytes]:
+                      show_image_editor: bool = False, show_camera_button: bool = False) -> dict[str, bytes]:
         """
         Request multiple files from the user.
 
@@ -1862,8 +1855,6 @@ class CallbackUtil:
         :param show_image_editor: Whether the user will see an image editor when image is uploaded in this file prompt.
         :param show_camera_button: Whether the user will be able to use camera to take a picture as an upload request,
             rather than selecting an existing file.
-        :param enforce_file_extensions: If true, then the file extensions provided in the exts parameter will be
-            enforced. If false, then the user may upload any file type.
         :return: A dictionary of file name to file bytes for each file the user uploaded.
         """
         # If no extensions were provided, use an empty list for the extensions instead.
@@ -1879,7 +1870,7 @@ class CallbackUtil:
         for file_path in file_paths:
             sink = InMemoryRecordDataSink(self.user)
             sink.consume_client_callback_file_path_data(file_path)
-            self.__verify_file(file_path, sink.data, exts if enforce_file_extensions else None)
+            self.__verify_file(file_path, sink.data, exts)
             ret_dict.update({file_path: sink.data})
 
         return ret_dict
@@ -1896,17 +1887,16 @@ class CallbackUtil:
         """
         if file_path is None or len(file_path) == 0 or file_bytes is None or len(file_bytes) == 0:
             raise SapioUserErrorException("Empty file provided or file unable to be read.")
-        if not allowed_extensions:
-            return
-        matches: bool = False
-        for ext in allowed_extensions:
-            # FR-47690: Changed to a case-insensitive match.
-            if file_path.casefold().endswith("." + ext.lstrip(".").casefold()):
-                matches = True
-                break
-        if not matches:
-            raise SapioUserErrorException("Unsupported file type. Expecting the following extension(s): "
-                                          + (",".join(allowed_extensions)))
+        if allowed_extensions:
+            matches: bool = False
+            for ext in allowed_extensions:
+                # FR-47690: Changed to a case-insensitive match.
+                if file_path.casefold().endswith("." + ext.lstrip(".").casefold()):
+                    matches = True
+                    break
+            if matches is False:
+                raise SapioUserErrorException("Unsupported file type. Expecting the following extension(s): "
+                                              + (",".join(allowed_extensions)))
 
     def write_file(self, file_name: str, file_data: str | bytes) -> None:
         """

sapiopycommons/eln/experiment_handler.py

@@ -206,11 +206,12 @@ class ExperimentHandler:
         else:
             user = context
             context = None
+        if context is not None and context.eln_experiment is not None and experiment is None:
+            experiment = context.eln_experiment
         # FR-46495 - Allow the init function of ExperimentHandler to take in an ElnExperiment that is separate from the
         # context.
         # CR-37038 - Allow other experiment object types to be provided. Convert them all down to ElnExperiment.
-        # PR-47793 - Fix cases where both a SapioWebhookContext and an experiment parameter are provided.
-        if experiment is not None:
+        if (context is None or context.eln_experiment is None) and experiment is not None:
             eln_manager = DataMgmtServer.get_eln_manager(user)
             # If this object is already an ElnExperiment, do nothing.
             if isinstance(experiment, ElnExperiment):
@@ -226,19 +227,13 @@ class ExperimentHandler:
                     raise SapioException(f"No experiment with notebook ID {notebook_id} located in the system.")
             # If this object is a record, assume it is an experiment record that we can query the system with.
             else:
-                record_id: int = AliasUtil.to_record_id(experiment)
+                record_id: int = AliasUtil.to_record_ids([experiment])[0]
                 experiment: ElnExperiment = eln_manager.get_eln_experiment_by_record_id(record_id)
                 if not experiment:
                     raise SapioException(f"No experiment with record ID {record_id} located in the system.")
-        elif context is not None and context.eln_experiment is not None:
-            experiment = context.eln_experiment
-
         if experiment is None:
             raise SapioException("Cannot initialize ExperimentHandler. No ELN Experiment found in the provided "
                                  "parameters.")
-        elif not isinstance(experiment, ElnExperiment):
-            raise SapioException("Cannot initialize ExperimentHandler. The experiment variable is not an "
-                                 "ElnExperiment!")
 
         return user, context, experiment
 
@@ -1430,9 +1425,7 @@ class ExperimentHandler:
         :return: The map of options for the input step.
         """
         step: ElnEntryStep = self.get_step(step)
-        # PR-47796: Fix the get_step_options function making a webservice query every time it is called instead of
-        # properly checking its cache of entry options.
-        if step.get_id() not in self._step_options:
+        if step not in self._step_options:
             self._step_options.update(ExperimentReportUtil.get_experiment_entry_options(self.user,
                                                                                         self.get_all_steps()))
         return self._step_options[step.get_id()]

sapiopycommons/files/temp_files.py

@@ -0,0 +1,49 @@
+import os
+import shutil
+import tempfile
+
+
+# FR-47422: Created class.
+class TempFileHandler:
+    """
+    A utility class to manage temporary files and directories.
+    """
+    directories: list[str]
+    files: list[str]
+
+    def __init__(self) -> None:
+        self.directories = []
+        self.files = []
+
+    def create_temp_directory(self) -> str:
+        """
+        :return: The path to a newly created temporary directory.
+        """
+        directory: str = tempfile.mkdtemp()
+        self.directories.append(directory)
+        return directory
+
+    def create_temp_file(self, data: str | bytes, suffix: str = "") -> str:
+        """
+        :param data: The data to write to the temporary file.
+        :param suffix: An optional suffix for the temporary file.
+        :return: The path to a newly created temporary file containing the provided data.
+        """
+        mode: str = 'w' if isinstance(data, str) else 'wb'
+        with tempfile.NamedTemporaryFile(mode=mode, suffix=suffix, delete=False) as tmp_file:
+            tmp_file.write(data)
+            file_path: str = tmp_file.name
+            self.files.append(file_path)
+        return file_path
+
+    def cleanup(self) -> None:
+        """
+        Delete all temporary files and directories created by this handler.
+        """
+        for directory in self.directories:
+            if os.path.exists(directory):
+                shutil.rmtree(directory)
+
+        for file_path in self.files:
+            if os.path.exists(file_path):
+                os.remove(file_path)

sapiopycommons/flowcyto/flow_cyto.py

@@ -4,16 +4,38 @@ from weakref import WeakValueDictionary
 
 from databind.json import dumps
 from sapiopylib.rest.User import SapioUser
-from sapiopylib.rest.utils.singletons import SapioContextManager
 
 from sapiopycommons.flowcyto.flowcyto_data import FlowJoWorkspaceInputJson, UploadFCSInputJson, \
     ComputeFlowStatisticsInputJson
 
 
-class FlowCytoManager(SapioContextManager):
+class FlowCytoManager:
     """
     This manager includes flow cytometry analysis tools that would require FlowCyto license to use.
     """
+    _user: SapioUser
+
+    __instances: WeakValueDictionary[SapioUser, FlowCytoManager] = WeakValueDictionary()
+    __initialized: bool
+
+    def __new__(cls, user: SapioUser):
+        """
+        Observes singleton pattern per record model manager object.
+
+        :param user: The user that will make the webservice request to the application.
+        """
+        obj = cls.__instances.get(user)
+        if not obj:
+            obj = object.__new__(cls)
+            obj.__initialized = False
+            cls.__instances[user] = obj
+        return obj
+
+    def __init__(self, user: SapioUser):
+        if self.__initialized:
+            return
+        self._user = user
+        self.__initialized = True
 
     def create_flowjo_workspace(self, workspace_input: FlowJoWorkspaceInputJson) -> int:
         """

sapiopycommons/general/accession_service.py

@@ -5,7 +5,6 @@ from typing import Any
 from weakref import WeakValueDictionary
 
 from sapiopylib.rest.User import SapioUser
-from sapiopylib.rest.utils.singletons import SapioContextManager
 
 _STR_JAVA_TYPE = "java.lang.String"
 _INT_JAVA_TYPE = "java.lang.Integer"
@@ -275,10 +274,37 @@ class AccessionServiceDescriptor:
         }
 
 
-class AccessionService(SapioContextManager):
+class AccessionService:
     """
     Provides Sapio Foundations Accession Service functionalities.
     """
+    _user: SapioUser
+
+    __instances: WeakValueDictionary[SapioUser, AccessionService] = WeakValueDictionary()
+    __initialized: bool
+
+    @property
+    def user(self) -> SapioUser:
+        return self._user
+
+    def __new__(cls, user: SapioUser):
+        """
+        Observes singleton pattern per record model manager object.
+
+        :param user: The user that will make the webservice request to the application.
+        """
+        obj = cls.__instances.get(user)
+        if not obj:
+            obj = object.__new__(cls)
+            obj.__initialized = False
+            cls.__instances[user] = obj
+        return obj
+
+    def __init__(self, user: SapioUser):
+        if self.__initialized:
+            return
+        self._user = user
+        self.__initialized = True
 
     def accession_with_config(self, data_type_name: str, data_field_name: str, num_ids: int) -> list[str]:
         """

sapiopycommons/multimodal/multimodal.py

@@ -7,13 +7,35 @@ from weakref import WeakValueDictionary
 from databind.json import dumps, loads
 from sapiopylib.rest.User import SapioUser
 from sapiopylib.rest.pojo.DataRecord import DataRecord
-from sapiopylib.rest.utils.singletons import SapioContextManager
 
 from sapiopycommons.general.exceptions import SapioException
 from sapiopycommons.multimodal.multimodal_data import *
 
 
-class MultiModalManager(SapioContextManager):
+class MultiModalManager:
+    _user: SapioUser
+
+    __instances: WeakValueDictionary[SapioUser, MultiModalManager] = WeakValueDictionary()
+    __initialized: bool
+
+    def __new__(cls, user: SapioUser):
+        """
+        Observes singleton pattern per record model manager object.
+
+        :param user: The user that will make the webservice request to the application.
+        """
+        obj = cls.__instances.get(user)
+        if not obj:
+            obj = object.__new__(cls)
+            obj.__initialized = False
+            cls.__instances[user] = obj
+        return obj
+
+    def __init__(self, user:SapioUser):
+        if self.__initialized:
+            return
+        self._user = user
+        self.__initialized = True
 
     def load_image_data(self, request: ImageDataRequestPojo) -> list[str]:
         """

sapiopycommons/recordmodel/record_handler.py

@@ -100,10 +100,6 @@ class RecordHandler:
             PyRecordModel instead of a WrappedRecordModel.
         :return: The record model for the input.
         """
-        # PR-47792: Set the wrapper_type to None if a str was provided instead of a type[WrappedType]. The type hints
-        # say this shouldn't be done anyway, but using this as a safeguard against user error.
-        if isinstance(wrapper_type, str):
-            wrapper_type = None
         if wrapper_type is not None:
             self.__verify_data_type(record, wrapper_type)
             if isinstance(record, PyRecordModel):

sapiopycommons/rules/eln_rule_handler.py

@@ -184,7 +184,4 @@ class ElnRuleHandler:
             instead of a model wrapper, then the returned records will be PyRecordModels instead of WrappedRecordModels.
         """
         dt: str = AliasUtil.to_data_type_name(wrapper_type)
-        # PR-47792: Set the wrapper_type to None if a str was provided instead of a type[WrappedType].
-        if isinstance(wrapper_type, str):
-            wrapper_type = None
         return self._rec_handler.wrap_models(self.get_records(dt, entry), wrapper_type)

sapiopycommons/rules/on_save_rule_handler.py

@@ -180,7 +180,4 @@ class OnSaveRuleHandler:
             instead of a model wrapper, then the returned records will be PyRecordModels instead of WrappedRecordModels.
         """
         dt: str = AliasUtil.to_data_type_name(wrapper_type)
-        # PR-47792: Set the wrapper_type to None if a str was provided instead of a type[WrappedType].
-        if isinstance(wrapper_type, str):
-            wrapper_type = None
         return self._rec_handler.wrap_models(self.get_records(dt, record_id), wrapper_type)

sapiopycommons/webhook/webservice_handlers.py

@@ -140,7 +140,7 @@ class AbstractWebserviceHandler(AbstractWebhookHandler):
         # Get the login credentials from the headers.
         auth: str = headers.get("Authorization")
         if auth and auth.startswith("Basic "):
-            credentials: list[str] = b64decode(auth.split("Basic ")[1]).decode().split(":")
+            credentials: list[str] = b64decode(auth.split("Basic ")[1]).decode().split(":", 1)
             user = self.basic_auth(url, credentials[0], credentials[1])
         elif auth and auth.startswith("Bearer "):
             user = self.bearer_token_auth(url, auth.split("Bearer ")[1])

{sapiopycommons-2025.9.5rc727.dist-info → sapiopycommons-2025.9.8a728.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: sapiopycommons
-Version: 2025.9.5rc727
+Version: 2025.9.8a728
 Summary: Official Sapio Python API Utilities Package
 Project-URL: Homepage, https://github.com/sapiosciences
 Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
@@ -17,7 +17,7 @@ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
 Classifier: Topic :: Software Development :: Libraries :: Python Modules
 Requires-Python: >=3.10
 Requires-Dist: databind>=4.5
-Requires-Dist: sapiopylib>=2025.7.31a279
+Requires-Dist: sapiopylib>=2025.4.17.264
 Description-Content-Type: text/markdown
 
 

{sapiopycommons-2025.9.5rc727.dist-info → sapiopycommons-2025.9.8a728.dist-info}/RECORD

@@ -1,8 +1,42 @@
 sapiopycommons/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sapiopycommons/ai/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sapiopycommons/ai/tool_of_tools.py,sha256=zYmQ4rNX-qYQnc-vNDnYZjtv9JgmQAmVVuHfVOdBF3w,46984
+sapiopycommons/ai/converter_service_base.py,sha256=TMSyEekbbqMk9dRuAtLlSJ1sA1H8KpyCDlSOeqGFMWI,5115
+sapiopycommons/ai/protobuf_utils.py,sha256=cBjbxoFAwU02kNUxEce95WnMU2CMuDD-qFaeWgvQJMQ,24599
+sapiopycommons/ai/server.py,sha256=jvmAcs4y8qp0d483wCAUgPlSBSoUUQvCjv_OvQXEGUs,4274
+sapiopycommons/ai/test_client.py,sha256=iPhn7cvKNLmDAXrjpmIkZpW2pDWlUhJZHDLHJbEoWsg,15673
+sapiopycommons/ai/tool_service_base.py,sha256=AVW6Yf0l_l4x__dosIZyAJun4UmZAZaBJRYzNru_fD4,45806
+sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.py,sha256=8tKXwLXcqFGdQHHSEBSi6Fd7dcaCFoOqmhjzqhenb_M,2372
+sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.pyi,sha256=FwtXmNAf7iYGEFm4kbqb04v77jNHbZg18ZmEDhle_bU,1444
+sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py,sha256=uO25bcnfGqXpP4ggUur54Nr73Wj-DGWftExzLNcxdHI,931
+sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.py,sha256=in9iHiLPYcnLWoLeqy4nWSI0jZGHD_bMhEFRIRtJPuo,20864
+sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.pyi,sha256=U5zXrbBxsWilLTsRWJd1TqjdjLKFsr3enF9OJ8GfyWw,34028
+sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2_grpc.py,sha256=Vj6qDKvsHgl25iBi3UjtTuGxihekgqCuufExvnJKzQI,940
+sapiopycommons/ai/protoapi/plan/step_output_pb2.py,sha256=EBNCzLUDwwCqDCh35zSfFdfq0RP8WrmTMXEzEPu_1_E,2655
+sapiopycommons/ai/protoapi/plan/step_output_pb2.pyi,sha256=yuxOYnDZ9DRuu-TLzaKOW_B4LUiYxTrNc2AbssXg4kE,2022
+sapiopycommons/ai/protoapi/plan/step_output_pb2_grpc.py,sha256=ebWLIfOFeVE2WuUIThMBerVweH-1phviGX195UTwYyg,924
+sapiopycommons/ai/protoapi/plan/step_pb2.py,sha256=mKTm_syaX99GzhWtGIPkxMTsfcsvW0QbRqjv06eHSM0,2433
+sapiopycommons/ai/protoapi/plan/step_pb2.pyi,sha256=QPIcsjcUvEGQkdZMUMiVzFFNDl8yOUe_qJtf5XEp5Ck,2062
+sapiopycommons/ai/protoapi/plan/step_pb2_grpc.py,sha256=1CBna5NBBxPwQhrkN8-Fim_j3FGmOfDo5C4c8sIBV8Q,917
+sapiopycommons/ai/protoapi/plan/converter/converter_pb2.py,sha256=rZYBRfR0umwDYvBdYnzxR1VZSutRqunhd3QsdtQXiCM,3593
+sapiopycommons/ai/protoapi/plan/converter/converter_pb2.pyi,sha256=_35yHfKTJH3SMdA5_c6qF6OZG6UwFWXpNh6dwRFDKkk,4250
+sapiopycommons/ai/protoapi/plan/converter/converter_pb2_grpc.py,sha256=6T5FCmT_vEFSywUVlAlWWfBDPaILb0Dq8yCGuO_Q-BU,6448
+sapiopycommons/ai/protoapi/plan/item/item_container_pb2.py,sha256=VIXmIw8-9jtH7peJZ16BEmGDfaVjjxTKhmlfcHWT82M,3863
+sapiopycommons/ai/protoapi/plan/item/item_container_pb2.pyi,sha256=bbPNQDwfFDd7_S7yU99Co1O7sRhxjle-RM0_nK8jgjc,4246
+sapiopycommons/ai/protoapi/plan/item/item_container_pb2_grpc.py,sha256=1NzBWBUINC0Rk-NGYZ-97BVKvVUxcn_I44IjQO2h-nQ,932
+sapiopycommons/ai/protoapi/plan/script/script_pb2.py,sha256=swyahlxM7fKm-RqtgMd1Czqd1JrbXRw3sYqFTkjbbyM,5144
+sapiopycommons/ai/protoapi/plan/script/script_pb2.pyi,sha256=GqlqLf9UX_B5vCR9cm-VoYLHFJNmZjJafcPJ6EDa8Qw,6192
+sapiopycommons/ai/protoapi/plan/script/script_pb2_grpc.py,sha256=ginPYpsiI6U6dB6gfWHJM8LWjSHUgcqz_gR7Dmdsyck,6864
+sapiopycommons/ai/protoapi/plan/tool/entry_pb2.py,sha256=yNyyyVvz94ewjGaHw3t0pUP-KH7ACg5hLC0QzrsFPis,2130
+sapiopycommons/ai/protoapi/plan/tool/entry_pb2.pyi,sha256=2vI0WSy0KGFHDewMSRyX5rUkmmmSaMBLvFO7txqA6Ug,2354
+sapiopycommons/ai/protoapi/plan/tool/entry_pb2_grpc.py,sha256=i24BfJEt7LtyROxHVEyS9RLYqLZKPvyJMKRFZj6NUTg,923
+sapiopycommons/ai/protoapi/plan/tool/tool_pb2.py,sha256=Gy6YjakkicKi4JthUFOxOyPLen-af7XI-ijinVs7EOY,8181
+sapiopycommons/ai/protoapi/plan/tool/tool_pb2.pyi,sha256=x33Ko2KC5_lw8omA1hYRGoUWvDitxNdloxswTxaMaqc,16713
+sapiopycommons/ai/protoapi/plan/tool/tool_pb2_grpc.py,sha256=CLSGEgSpN4D6wcE-P_5lzb2Nttjr4XjumxGUrZQSip0,6915
+sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.py,sha256=MhWzTyJz3xZgpdW8_LCVKuzKXT0cv6iHMRB-UNCUNzM,2094
+sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.pyi,sha256=vLYA8Tkzq2AwgVadoUp5vAg4HgGlgga0kzeS3e_XkCQ,1621
+sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2_grpc.py,sha256=imcciy_kbmm7OV_W3jYZ53R6GQ6Yh-eUcVW0A9GkWdg,931
 sapiopycommons/callbacks/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sapiopycommons/callbacks/callback_util.py,sha256=Z1LcXnRRjXyhmcSDUwh4NzcA6ICtcbFUMKcvAqQcS8E,153811
+sapiopycommons/callbacks/callback_util.py,sha256=OuPJ1o6jcDQ7qV-dxrjAkJerGbVI9_9P-xu0r3ODaMM,153008
 sapiopycommons/callbacks/field_builder.py,sha256=rnIP-RJafk3mZlAx1eJ8a0eSW9Ps_L6_WadCmusnENw,38772
 sapiopycommons/chem/IndigoMolecules.py,sha256=7ucCaRMLu1zfH2uPIvXwRTSdpNcS03O1P9p_O-5B4xQ,5110
 sapiopycommons/chem/Molecules.py,sha256=mVqPn32MPMjF0iZas-5MFkS-upIdoW5OB72KKZmJRJA,12523
@@ -18,26 +52,25 @@ sapiopycommons/datatype/data_fields.py,sha256=pczUlEcE0TeHEDU0Gkvu7voacSLPXCB7l9
 sapiopycommons/datatype/pseudo_data_types.py,sha256=lAJDnFuStrUP0mK5AuYlFvLerwjEB-ABd6Z4qlCrwJA,40637
 sapiopycommons/eln/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sapiopycommons/eln/experiment_cache.py,sha256=Zv4IcsAl95ftO2ul3DRc_Hyno0AfC3OvFV7RYb72ITo,9560
-sapiopycommons/eln/experiment_handler.py,sha256=1RzrWOicF9VjcWlaziV46yBEk1BOP4BuTJ0JeYdn50I,99204
+sapiopycommons/eln/experiment_handler.py,sha256=kMQuccmGyPzc8wYKsds6AZ_VjH9WLjtUY6hsSWXJx6s,98786
 sapiopycommons/eln/experiment_report_util.py,sha256=GLpgwSEPuUqnY1v4oJ1ao60Va-YcgXh7E-cH9YnVeAg,37256
 sapiopycommons/eln/experiment_step_factory.py,sha256=qw9UfLslVzB6dEIZPOZ85XHKpld81RhD4-csM6TgQNg,26099
 sapiopycommons/eln/experiment_tags.py,sha256=7-fpOiSqrjbXmWIJhEhaxMgLsVCPAtKqH8xRzpDVKoE,356
 sapiopycommons/eln/plate_designer.py,sha256=XFazSvhTbSy47t80-jc2tyx_-fQ_IUjKd18JQKEFcsY,13939
 sapiopycommons/eln/step_creation.py,sha256=CFkGC-SxwAQpQlcs_obqLAVgmsNxKSGMqMtO_E6IVmw,10171
 sapiopycommons/files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sapiopycommons/files/assay_plate_reader.py,sha256=3c2PQiiAbc2QJU9ZfNLzcTmvJrUwsbkIHO7R6R52xGU,3020
 sapiopycommons/files/complex_data_loader.py,sha256=T39veNhvYl6j_uZjIIJ8Mk5Aa7otR5RB-g8XlAdkksA,1421
 sapiopycommons/files/file_bridge.py,sha256=vKbqxPexi15epr_-_qLrEfYoxNxB031mXN92iVtOMqE,9511
 sapiopycommons/files/file_bridge_handler.py,sha256=SEYDIQhSCmjI6qyLdDJE8JVKSd0WYvF7JvAq_Ahp9Do,25503
 sapiopycommons/files/file_data_handler.py,sha256=f96MlkMuQhUCi4oLnzJK5AiuElCp5jLI8_sJkZVwpws,36779
-sapiopycommons/files/file_text_converter.py,sha256=Gaj_divTiKXWd6flDOgrxNXpcn9fDWqxX6LUG0joePk,7516
 sapiopycommons/files/file_util.py,sha256=djouyGjsYgWzjz2OBRnSeMDgj6NrsJUm1a2J93J8Wco,31915
 sapiopycommons/files/file_validator.py,sha256=ryg22-93csmRO_Pv0ZpWphNkB74xWZnHyJ23K56qLj0,28761
 sapiopycommons/files/file_writer.py,sha256=hACVl0duCjP28gJ1NPljkjagNCLod0ygUlPbvUmRDNM,17605
-sapiopycommons/flowcyto/flow_cyto.py,sha256=B6DFquLi-gcWfJWyP4vYfwTXXJKl6O9W5-k8FzkM0Oo,2610
+sapiopycommons/files/temp_files.py,sha256=Puv59qtGwiXVJnTm4YuyeZPKw_leXDW906Uz_xbIt6A,1542
+sapiopycommons/flowcyto/flow_cyto.py,sha256=vs9WhXXKz3urpjL8QKSk56B-NSmQR3O3x_WFBKoeO10,3227
 sapiopycommons/flowcyto/flowcyto_data.py,sha256=mYKFuLbtpJ-EsQxLGtu4tNHVlygTxKixgJxJqD68F58,2596
 sapiopycommons/general/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sapiopycommons/general/accession_service.py,sha256=ZvtvZg7d_siMJUedjrF14mcqo5ZqVA5IJxDa5enlB-8,12792
+sapiopycommons/general/accession_service.py,sha256=3e__bVs7CYZ1CduLlGA9plnK7nCtdy7GXjCrNObPFgo,13484
 sapiopycommons/general/aliases.py,sha256=VwnWf_P803pcteoAIs0DkLScVChCS5XNgryTp8FzaNc,14696
 sapiopycommons/general/audit_log.py,sha256=sQAMcJx0cNkgZm7nTZSaGPxWvHG0_x6dBtU0jESavb4,9131
 sapiopycommons/general/custom_report_util.py,sha256=9elLEUSgfM0gli8nRPz1uYkhaXN4Vnx3piSiNHv5IBs,19156
@@ -49,24 +82,24 @@ sapiopycommons/general/popup_util.py,sha256=HKILegU1uCL_6abNlNL0Wn3xgX2JNa_kJeq7
 sapiopycommons/general/sapio_links.py,sha256=YkcVKNLrSGoM7tCCXBAsIbIxylctwdcEyhePrRMODe0,2859
 sapiopycommons/general/storage_util.py,sha256=ovmK_jN7v09BoX07XxwShpBUC5WYQOM7dbKV_VeLXJU,8892
 sapiopycommons/general/time_util.py,sha256=jU1urPoZRv6evNucR0-288EyT4PrsDpCr-H1-7BKq9A,12363
-sapiopycommons/multimodal/multimodal.py,sha256=EP9WYzx1CvidmEBlvzO6tiF4HJwsPB1FgxpnbWzxnpA,6161
+sapiopycommons/multimodal/multimodal.py,sha256=PFaGJPbKvW__tnxb8KkgkJZOKjQdgxF_kGfD5chet1s,6779
 sapiopycommons/multimodal/multimodal_data.py,sha256=0BeVPr9HaC0hNTF1v1phTIKGruvNnwerHsD994qJKBg,15099
 sapiopycommons/processtracking/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sapiopycommons/processtracking/custom_workflow_handler.py,sha256=eYKdYlwo8xx-6AkB_iPUBNV9yDoNvW2h_Sm3i8JpmRU,25844
 sapiopycommons/processtracking/endpoints.py,sha256=5AJLbhRKQsOeeOdQa888xcCJZD5aavxD-DHZ36Qob_M,12548
 sapiopycommons/recordmodel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sapiopycommons/recordmodel/record_handler.py,sha256=HsJlgB6Nvmtlc1fiC1zn_vP-0l-b_cvUQSlQd3pEiL8,95308
+sapiopycommons/recordmodel/record_handler.py,sha256=WxmgrWQ3nX3eVZSHJY7e8fj7CI7azSyEyovmYcy9098,95021
 sapiopycommons/rules/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sapiopycommons/rules/eln_rule_handler.py,sha256=Ec2hvxn6gmBvZjhX9-7WCFqafxFE9JSy2zCsvFsVyS4,11565
-sapiopycommons/rules/on_save_rule_handler.py,sha256=HLdgUkxmaoHBK3jaycZlUHWam4kk36zmw7VDuRRiAx8,11332
+sapiopycommons/rules/eln_rule_handler.py,sha256=MnE-eSl1kNfaXWFi9elTOC9V2fdUzrwWTvCHUprC8_I,11388
+sapiopycommons/rules/on_save_rule_handler.py,sha256=fkNIlslAZZ0BUrRiwecyvf42JBR8FpCCQ6DBNKXP2jE,11155
 sapiopycommons/samples/aliquot.py,sha256=mWOJUqaQh0t3HklNuGdmuV7D5zzXs6fpLwtDdM6_XTo,3018
 sapiopycommons/sftpconnect/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sapiopycommons/sftpconnect/sftp_builder.py,sha256=lFK3FeXk-sFLefW0hqY8WGUQDeYiGaT6yDACzT_zFgQ,3015
 sapiopycommons/webhook/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sapiopycommons/webhook/webhook_context.py,sha256=D793uLsb1691SalaPnBUk3rOSxn_hYLhdvkaIxjNXss,1909
 sapiopycommons/webhook/webhook_handlers.py,sha256=7o_wXOruhT9auNh8OfhJAh4WhhiPKij67FMBSpGPICc,39939
-sapiopycommons/webhook/webservice_handlers.py,sha256=tyaYGG1-v_JJrJHZ6cy5mGCxX9z1foLw7pM4MDJlFxs,14297
-sapiopycommons-2025.9.5rc727.dist-info/METADATA,sha256=ijpV_R8_npLSLpDBipXWhQhvYfJWynUGqYBdKTkNXwk,3143
-sapiopycommons-2025.9.5rc727.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
-sapiopycommons-2025.9.5rc727.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
-sapiopycommons-2025.9.5rc727.dist-info/RECORD,,
+sapiopycommons/webhook/webservice_handlers.py,sha256=cvW6Mk_110BzYqkbk63Kg7jWrltBCDALOlkJRu8h4VQ,14300
+sapiopycommons-2025.9.8a728.dist-info/METADATA,sha256=6IMqQ6KDSTEcXMpbfbwpBSC_eGnhn-336JCdZkvNmR0,3142
+sapiopycommons-2025.9.8a728.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
+sapiopycommons-2025.9.8a728.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
+sapiopycommons-2025.9.8a728.dist-info/RECORD,,