sapiopycommons 2025.9.10a744__py3-none-any.whl → 2025.9.10a745__py3-none-any.whl

sapiopycommons/ai/tool_service_base.py

@@ -5,14 +5,16 @@ import io
 import json
 import logging
 import re
+import subprocess
 import traceback
 from abc import abstractmethod, ABC
 from logging import Logger
+from subprocess import CompletedProcess
 from typing import Any, Iterable, Mapping
 
 from grpc import ServicerContext
 from sapiopylib.rest.User import SapioUser, ensure_logger_initialized
-from sapiopylib.rest.pojo.datatype.FieldDefinition import AbstractVeloxFieldDefinition, FieldValidator
+from sapiopylib.rest.pojo.datatype.FieldDefinition import AbstractVeloxFieldDefinition
 
 from sapiopycommons.ai.protoapi.fielddefinitions.fields_pb2 import FieldValueMapPbo, FieldValuePbo
 from sapiopycommons.ai.protoapi.fielddefinitions.velox_field_def_pb2 import VeloxFieldDefPbo, FieldTypePbo, \
@@ -828,6 +830,26 @@ class ToolBase(ABC):
         """
         pass
 
+    def call_subprocess(self, args: list[str], cwd: str | None = None, **kwargs) -> CompletedProcess[str]:
+        """
+        Call a subprocess with the given arguments, logging the command and any errors that occur.
+        This function will raise an exception if the return code of the subprocess is non-zero. The output of the
+        subprocess will be captured and returned as part of the CompletedProcess object.
+
+        :param args: The list of arguments to pass to the subprocess.
+        :param cwd: The working directory to run the subprocess in. If None, the current working directory is used.
+        :param kwargs: Additional keyword arguments to pass to subprocess.run().
+        :return: The CompletedProcess object returned by subprocess.run().
+        """
+        try:
+            self.log_info(f"Running subprocess with command: {' '.join(args)}")
+            return subprocess.run(args, check=True, capture_output=True, text=True, cwd=cwd, **kwargs)
+        except subprocess.CalledProcessError as e:
+            self.log_error(f"Error running subprocess. Return code: {e.returncode}")
+            self.log_error(f"STDOUT: {e.stdout}")
+            self.log_error(f"STDERR: {e.stderr}")
+            raise
+
     def log_info(self, message: str) -> None:
         """
         Log an info message for this tool. If verbose logging is enabled, this message will be included in the logs

{sapiopycommons-2025.9.10a744.dist-info → sapiopycommons-2025.9.10a745.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: sapiopycommons
-Version: 2025.9.10a744
+Version: 2025.9.10a745
 Summary: Official Sapio Python API Utilities Package
 Project-URL: Homepage, https://github.com/sapiosciences
 Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>

{sapiopycommons-2025.9.10a744.dist-info → sapiopycommons-2025.9.10a745.dist-info}/RECORD

@@ -4,7 +4,7 @@ sapiopycommons/ai/converter_service_base.py,sha256=TMSyEekbbqMk9dRuAtLlSJ1sA1H8K
 sapiopycommons/ai/protobuf_utils.py,sha256=cBjbxoFAwU02kNUxEce95WnMU2CMuDD-qFaeWgvQJMQ,24599
 sapiopycommons/ai/server.py,sha256=XDm_mj1yWHw-xQRFsFRHnsGw2JU0wsW2mR22P8PB09A,5744
 sapiopycommons/ai/test_client.py,sha256=-kMXXU_f5FAB7n4UX66NT8I8G52M0eZjn-hpESN_io8,16330
-sapiopycommons/ai/tool_service_base.py,sha256=dEuhaQlHK0QNY0izDMYrh6iGGh-_E3X5WdWyhTmTmCY,49944
+sapiopycommons/ai/tool_service_base.py,sha256=AQO9kXhIKofkpmWRU0fq5TIcAr0kyt9vdllmMsYYkJs,51213
 sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.py,sha256=8tKXwLXcqFGdQHHSEBSi6Fd7dcaCFoOqmhjzqhenb_M,2372
 sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.pyi,sha256=FwtXmNAf7iYGEFm4kbqb04v77jNHbZg18ZmEDhle_bU,1444
 sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py,sha256=uO25bcnfGqXpP4ggUur54Nr73Wj-DGWftExzLNcxdHI,931
@@ -99,7 +99,7 @@ sapiopycommons/webhook/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3
 sapiopycommons/webhook/webhook_context.py,sha256=D793uLsb1691SalaPnBUk3rOSxn_hYLhdvkaIxjNXss,1909
 sapiopycommons/webhook/webhook_handlers.py,sha256=7o_wXOruhT9auNh8OfhJAh4WhhiPKij67FMBSpGPICc,39939
 sapiopycommons/webhook/webservice_handlers.py,sha256=cvW6Mk_110BzYqkbk63Kg7jWrltBCDALOlkJRu8h4VQ,14300
-sapiopycommons-2025.9.10a744.dist-info/METADATA,sha256=72aJpnGlZiqo_L-EB1JpdUyOmP8vLTNiLoOC8_RZ4o8,3143
-sapiopycommons-2025.9.10a744.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
-sapiopycommons-2025.9.10a744.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
-sapiopycommons-2025.9.10a744.dist-info/RECORD,,
+sapiopycommons-2025.9.10a745.dist-info/METADATA,sha256=Xn9XSg5cqnIgR5qXWfQsLbWkP1OiXcANtCV4dORGkbQ,3143
+sapiopycommons-2025.9.10a745.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
+sapiopycommons-2025.9.10a745.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
+sapiopycommons-2025.9.10a745.dist-info/RECORD,,