sapiopycommons 2025.8.22a716__py3-none-any.whl → 2025.8.29a719__py3-none-any.whl

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Files changed (49) hide show
  1. sapiopycommons/ai/converter_service_base.py +131 -0
  2. sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.py +43 -0
  3. sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.pyi +31 -0
  4. sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py +24 -0
  5. sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.py +123 -0
  6. sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.pyi +598 -0
  7. sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2_grpc.py +24 -0
  8. sapiopycommons/ai/protoapi/plan/converter/converter_pb2.py +51 -0
  9. sapiopycommons/ai/protoapi/plan/converter/converter_pb2.pyi +63 -0
  10. sapiopycommons/ai/protoapi/plan/converter/converter_pb2_grpc.py +149 -0
  11. sapiopycommons/ai/protoapi/plan/item/item_container_pb2.py +55 -0
  12. sapiopycommons/ai/protoapi/plan/item/item_container_pb2.pyi +90 -0
  13. sapiopycommons/ai/protoapi/plan/item/item_container_pb2_grpc.py +24 -0
  14. sapiopycommons/ai/protoapi/plan/script/script_pb2.py +59 -0
  15. sapiopycommons/ai/protoapi/plan/script/script_pb2.pyi +102 -0
  16. sapiopycommons/ai/protoapi/plan/script/script_pb2_grpc.py +153 -0
  17. sapiopycommons/ai/protoapi/plan/step_output_pb2.py +45 -0
  18. sapiopycommons/ai/protoapi/plan/step_output_pb2.pyi +42 -0
  19. sapiopycommons/ai/protoapi/plan/step_output_pb2_grpc.py +24 -0
  20. sapiopycommons/ai/protoapi/plan/step_pb2.py +43 -0
  21. sapiopycommons/ai/protoapi/plan/step_pb2.pyi +43 -0
  22. sapiopycommons/ai/protoapi/plan/step_pb2_grpc.py +24 -0
  23. sapiopycommons/ai/protoapi/plan/tool/entry_pb2.py +41 -0
  24. sapiopycommons/ai/protoapi/plan/tool/entry_pb2.pyi +35 -0
  25. sapiopycommons/ai/protoapi/plan/tool/entry_pb2_grpc.py +24 -0
  26. sapiopycommons/ai/protoapi/plan/tool/tool_pb2.py +75 -0
  27. sapiopycommons/ai/protoapi/plan/tool/tool_pb2.pyi +237 -0
  28. sapiopycommons/ai/protoapi/plan/tool/tool_pb2_grpc.py +154 -0
  29. sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.py +39 -0
  30. sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.pyi +32 -0
  31. sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2_grpc.py +24 -0
  32. sapiopycommons/ai/protobuf_utils.py +504 -0
  33. sapiopycommons/ai/server.py +104 -0
  34. sapiopycommons/ai/test_client.py +356 -0
  35. sapiopycommons/ai/tool_service_base.py +951 -0
  36. sapiopycommons/callbacks/callback_util.py +16 -26
  37. sapiopycommons/chem/IndigoMolecules.py +10 -12
  38. sapiopycommons/flowcyto/flow_cyto.py +24 -2
  39. sapiopycommons/general/accession_service.py +28 -2
  40. sapiopycommons/multimodal/multimodal.py +24 -2
  41. sapiopycommons/webhook/webservice_handlers.py +1 -1
  42. {sapiopycommons-2025.8.22a716.dist-info → sapiopycommons-2025.8.29a719.dist-info}/METADATA +2 -2
  43. {sapiopycommons-2025.8.22a716.dist-info → sapiopycommons-2025.8.29a719.dist-info}/RECORD +45 -14
  44. sapiopycommons/ai/tool_of_tools.py +0 -917
  45. sapiopycommons/chem/ps_commons.py +0 -773
  46. sapiopycommons/files/assay_plate_reader.py +0 -93
  47. sapiopycommons/files/file_text_converter.py +0 -207
  48. {sapiopycommons-2025.8.22a716.dist-info → sapiopycommons-2025.8.29a719.dist-info}/WHEEL +0 -0
  49. {sapiopycommons-2025.8.22a716.dist-info → sapiopycommons-2025.8.29a719.dist-info}/licenses/LICENSE +0 -0
@@ -1765,11 +1765,8 @@ class CallbackUtil:
1765
1765
  blank_result_handling = BlankResultHandling.REPEAT
1766
1766
  def not_blank_func(r: list[DataRecord]) -> bool:
1767
1767
  return bool(r)
1768
- response: list[DataRecord] = self.__send_dialog_blank_results(request,
1769
- self.callback.show_input_selection_dialog,
1770
- not_blank_func, blank_result_handling,
1771
- repeat_message, cancel_message)
1772
- return self.rec_handler.wrap_models(response, wrapper_type)
1768
+ return self.__send_dialog_blank_results(request, self.callback.show_input_selection_dialog, not_blank_func,
1769
+ blank_result_handling, repeat_message, cancel_message)
1773
1770
 
1774
1771
  # FR-47690: Deprecated the require_authentication parameter.
1775
1772
  # noinspection PyUnusedLocal
@@ -1815,8 +1812,7 @@ class CallbackUtil:
1815
1812
  return response
1816
1813
 
1817
1814
  def request_file(self, title: str, exts: Iterable[str] | None = None,
1818
- show_image_editor: bool = False, show_camera_button: bool = False,
1819
- *, enforce_file_extensions: bool = True) -> tuple[str, bytes]:
1815
+ show_image_editor: bool = False, show_camera_button: bool = False) -> tuple[str, bytes]:
1820
1816
  """
1821
1817
  Request a single file from the user.
1822
1818
 
@@ -1826,8 +1822,6 @@ class CallbackUtil:
1826
1822
  :param show_image_editor: Whether the user will see an image editor when image is uploaded in this file prompt.
1827
1823
  :param show_camera_button: Whether the user will be able to use camera to take a picture as an upload request,
1828
1824
  rather than selecting an existing file.
1829
- :param enforce_file_extensions: If true, then the file extensions provided in the exts parameter will be
1830
- enforced. If false, then the user may upload any file type.
1831
1825
  :return: The file name and bytes of the uploaded file.
1832
1826
  """
1833
1827
  # If no extensions were provided, use an empty list for the extensions instead.
@@ -1847,12 +1841,11 @@ class CallbackUtil:
1847
1841
  file_path: str = self.__send_dialog(request, self.callback.show_file_dialog, data_sink=do_consume)
1848
1842
 
1849
1843
  # Verify that each of the file given matches the expected extension(s).
1850
- self.__verify_file(file_path, sink.data, exts if enforce_file_extensions else None)
1844
+ self.__verify_file(file_path, sink.data, exts)
1851
1845
  return file_path, sink.data
1852
1846
 
1853
1847
  def request_files(self, title: str, exts: Iterable[str] | None = None,
1854
- show_image_editor: bool = False, show_camera_button: bool = False,
1855
- *, enforce_file_extensions: bool = True) -> dict[str, bytes]:
1848
+ show_image_editor: bool = False, show_camera_button: bool = False) -> dict[str, bytes]:
1856
1849
  """
1857
1850
  Request multiple files from the user.
1858
1851
 
@@ -1862,8 +1855,6 @@ class CallbackUtil:
1862
1855
  :param show_image_editor: Whether the user will see an image editor when image is uploaded in this file prompt.
1863
1856
  :param show_camera_button: Whether the user will be able to use camera to take a picture as an upload request,
1864
1857
  rather than selecting an existing file.
1865
- :param enforce_file_extensions: If true, then the file extensions provided in the exts parameter will be
1866
- enforced. If false, then the user may upload any file type.
1867
1858
  :return: A dictionary of file name to file bytes for each file the user uploaded.
1868
1859
  """
1869
1860
  # If no extensions were provided, use an empty list for the extensions instead.
@@ -1879,7 +1870,7 @@ class CallbackUtil:
1879
1870
  for file_path in file_paths:
1880
1871
  sink = InMemoryRecordDataSink(self.user)
1881
1872
  sink.consume_client_callback_file_path_data(file_path)
1882
- self.__verify_file(file_path, sink.data, exts if enforce_file_extensions else None)
1873
+ self.__verify_file(file_path, sink.data, exts)
1883
1874
  ret_dict.update({file_path: sink.data})
1884
1875
 
1885
1876
  return ret_dict
@@ -1896,17 +1887,16 @@ class CallbackUtil:
1896
1887
  """
1897
1888
  if file_path is None or len(file_path) == 0 or file_bytes is None or len(file_bytes) == 0:
1898
1889
  raise SapioUserErrorException("Empty file provided or file unable to be read.")
1899
- if not allowed_extensions:
1900
- return
1901
- matches: bool = False
1902
- for ext in allowed_extensions:
1903
- # FR-47690: Changed to a case-insensitive match.
1904
- if file_path.casefold().endswith("." + ext.lstrip(".").casefold()):
1905
- matches = True
1906
- break
1907
- if not matches:
1908
- raise SapioUserErrorException("Unsupported file type. Expecting the following extension(s): "
1909
- + (",".join(allowed_extensions)))
1890
+ if allowed_extensions:
1891
+ matches: bool = False
1892
+ for ext in allowed_extensions:
1893
+ # FR-47690: Changed to a case-insensitive match.
1894
+ if file_path.casefold().endswith("." + ext.lstrip(".").casefold()):
1895
+ matches = True
1896
+ break
1897
+ if matches is False:
1898
+ raise SapioUserErrorException("Unsupported file type. Expecting the following extension(s): "
1899
+ + (",".join(allowed_extensions)))
1910
1900
 
1911
1901
  def write_file(self, file_name: str, file_data: str | bytes) -> None:
1912
1902
  """
@@ -6,15 +6,11 @@ indigo = Indigo()
6
6
  renderer = IndigoRenderer(indigo)
7
7
  indigo.setOption("render-output-format", "svg")
8
8
  indigo.setOption("ignore-stereochemistry-errors", True)
9
- # Ignore only if loading as non-query object. That is the meaning of this flag. Does nothing if it's query molecule.
10
- indigo.setOption("ignore-noncritical-query-features", True)
11
9
  indigo.setOption("render-stereo-style", "ext")
12
10
  indigo.setOption("aromaticity-model", "generic")
13
11
  indigo.setOption("render-coloring", True)
14
12
  indigo.setOption("molfile-saving-mode", "3000")
15
13
  indigo.setOption("dearomatize-verification", False)
16
- #YQ: Sapio-Only Option, this is my modification.
17
- indigo.setOption("rpe-bypass-saturation-check", True)
18
14
  indigo_inchi = IndigoInchi(indigo)
19
15
 
20
16
 
@@ -26,15 +22,17 @@ def get_aromatic_dearomatic_forms(m: IndigoObject):
26
22
  :return: pair of indigo objects, first is aromatic, second is dearomatic.
27
23
  """
28
24
  try:
29
- # Note: there are problems with aromatization being applied more than once, because it can crash.
30
- # This is because an implicit assumption made on consequence of a particular perception may cause further
31
- # aromatization to fail to find next steps and also fails to find termination.
32
- # So, to ensure we only apply aromatization once, we dearomatize first, then aromatize.
33
- dearomatic_reaction = m.clone()
34
- dearomatic_reaction.dearomatize()
35
- aromatic_reaction = dearomatic_reaction.clone()
25
+ aromatic_reaction = m.clone()
36
26
  aromatic_reaction.aromatize()
37
- return aromatic_reaction, dearomatic_reaction
27
+ dearomatic_reaction = aromatic_reaction.clone()
28
+ dearomatic_reaction.dearomatize()
29
+ second_aromatic_reaction = dearomatic_reaction.clone()
30
+ second_aromatic_reaction.aromatize()
31
+ match = indigo.exactMatch(aromatic_reaction, second_aromatic_reaction)
32
+ if match:
33
+ return aromatic_reaction, dearomatic_reaction
34
+ else:
35
+ return m, dearomatic_reaction
38
36
  except (Exception):
39
37
  # If aromatization then following deromatization fails, we just skip it.
40
38
  dearomatic_reaction = m.clone()
@@ -4,16 +4,38 @@ from weakref import WeakValueDictionary
4
4
 
5
5
  from databind.json import dumps
6
6
  from sapiopylib.rest.User import SapioUser
7
- from sapiopylib.rest.utils.singletons import SapioContextManager
8
7
 
9
8
  from sapiopycommons.flowcyto.flowcyto_data import FlowJoWorkspaceInputJson, UploadFCSInputJson, \
10
9
  ComputeFlowStatisticsInputJson
11
10
 
12
11
 
13
- class FlowCytoManager(SapioContextManager):
12
+ class FlowCytoManager:
14
13
  """
15
14
  This manager includes flow cytometry analysis tools that would require FlowCyto license to use.
16
15
  """
16
+ _user: SapioUser
17
+
18
+ __instances: WeakValueDictionary[SapioUser, FlowCytoManager] = WeakValueDictionary()
19
+ __initialized: bool
20
+
21
+ def __new__(cls, user: SapioUser):
22
+ """
23
+ Observes singleton pattern per record model manager object.
24
+
25
+ :param user: The user that will make the webservice request to the application.
26
+ """
27
+ obj = cls.__instances.get(user)
28
+ if not obj:
29
+ obj = object.__new__(cls)
30
+ obj.__initialized = False
31
+ cls.__instances[user] = obj
32
+ return obj
33
+
34
+ def __init__(self, user: SapioUser):
35
+ if self.__initialized:
36
+ return
37
+ self._user = user
38
+ self.__initialized = True
17
39
 
18
40
  def create_flowjo_workspace(self, workspace_input: FlowJoWorkspaceInputJson) -> int:
19
41
  """
@@ -5,7 +5,6 @@ from typing import Any
5
5
  from weakref import WeakValueDictionary
6
6
 
7
7
  from sapiopylib.rest.User import SapioUser
8
- from sapiopylib.rest.utils.singletons import SapioContextManager
9
8
 
10
9
  _STR_JAVA_TYPE = "java.lang.String"
11
10
  _INT_JAVA_TYPE = "java.lang.Integer"
@@ -275,10 +274,37 @@ class AccessionServiceDescriptor:
275
274
  }
276
275
 
277
276
 
278
- class AccessionService(SapioContextManager):
277
+ class AccessionService:
279
278
  """
280
279
  Provides Sapio Foundations Accession Service functionalities.
281
280
  """
281
+ _user: SapioUser
282
+
283
+ __instances: WeakValueDictionary[SapioUser, AccessionService] = WeakValueDictionary()
284
+ __initialized: bool
285
+
286
+ @property
287
+ def user(self) -> SapioUser:
288
+ return self._user
289
+
290
+ def __new__(cls, user: SapioUser):
291
+ """
292
+ Observes singleton pattern per record model manager object.
293
+
294
+ :param user: The user that will make the webservice request to the application.
295
+ """
296
+ obj = cls.__instances.get(user)
297
+ if not obj:
298
+ obj = object.__new__(cls)
299
+ obj.__initialized = False
300
+ cls.__instances[user] = obj
301
+ return obj
302
+
303
+ def __init__(self, user: SapioUser):
304
+ if self.__initialized:
305
+ return
306
+ self._user = user
307
+ self.__initialized = True
282
308
 
283
309
  def accession_with_config(self, data_type_name: str, data_field_name: str, num_ids: int) -> list[str]:
284
310
  """
@@ -7,13 +7,35 @@ from weakref import WeakValueDictionary
7
7
  from databind.json import dumps, loads
8
8
  from sapiopylib.rest.User import SapioUser
9
9
  from sapiopylib.rest.pojo.DataRecord import DataRecord
10
- from sapiopylib.rest.utils.singletons import SapioContextManager
11
10
 
12
11
  from sapiopycommons.general.exceptions import SapioException
13
12
  from sapiopycommons.multimodal.multimodal_data import *
14
13
 
15
14
 
16
- class MultiModalManager(SapioContextManager):
15
+ class MultiModalManager:
16
+ _user: SapioUser
17
+
18
+ __instances: WeakValueDictionary[SapioUser, MultiModalManager] = WeakValueDictionary()
19
+ __initialized: bool
20
+
21
+ def __new__(cls, user: SapioUser):
22
+ """
23
+ Observes singleton pattern per record model manager object.
24
+
25
+ :param user: The user that will make the webservice request to the application.
26
+ """
27
+ obj = cls.__instances.get(user)
28
+ if not obj:
29
+ obj = object.__new__(cls)
30
+ obj.__initialized = False
31
+ cls.__instances[user] = obj
32
+ return obj
33
+
34
+ def __init__(self, user:SapioUser):
35
+ if self.__initialized:
36
+ return
37
+ self._user = user
38
+ self.__initialized = True
17
39
 
18
40
  def load_image_data(self, request: ImageDataRequestPojo) -> list[str]:
19
41
  """
@@ -140,7 +140,7 @@ class AbstractWebserviceHandler(AbstractWebhookHandler):
140
140
  # Get the login credentials from the headers.
141
141
  auth: str = headers.get("Authorization")
142
142
  if auth and auth.startswith("Basic "):
143
- credentials: list[str] = b64decode(auth.split("Basic ")[1]).decode().split(":")
143
+ credentials: list[str] = b64decode(auth.split("Basic ")[1]).decode().split(":", 1)
144
144
  user = self.basic_auth(url, credentials[0], credentials[1])
145
145
  elif auth and auth.startswith("Bearer "):
146
146
  user = self.bearer_token_auth(url, auth.split("Bearer ")[1])
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: sapiopycommons
3
- Version: 2025.8.22a716
3
+ Version: 2025.8.29a719
4
4
  Summary: Official Sapio Python API Utilities Package
5
5
  Project-URL: Homepage, https://github.com/sapiosciences
6
6
  Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
@@ -17,7 +17,7 @@ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
17
17
  Classifier: Topic :: Software Development :: Libraries :: Python Modules
18
18
  Requires-Python: >=3.10
19
19
  Requires-Dist: databind>=4.5
20
- Requires-Dist: sapiopylib>=2025.7.31a279
20
+ Requires-Dist: sapiopylib>=2025.4.17.264
21
21
  Description-Content-Type: text/markdown
22
22
 
23
23
 
@@ -1,13 +1,46 @@
1
1
  sapiopycommons/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
2
2
  sapiopycommons/ai/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
3
- sapiopycommons/ai/tool_of_tools.py,sha256=zYmQ4rNX-qYQnc-vNDnYZjtv9JgmQAmVVuHfVOdBF3w,46984
3
+ sapiopycommons/ai/converter_service_base.py,sha256=A9DkouIT2S-SgcsphEuCpA0Jr6YjxubPVYETQXjIBLI,5065
4
+ sapiopycommons/ai/protobuf_utils.py,sha256=cBjbxoFAwU02kNUxEce95WnMU2CMuDD-qFaeWgvQJMQ,24599
5
+ sapiopycommons/ai/server.py,sha256=w70KUENxrYoMyDRFunCAlxhhwXXWBNngCwG40Po7vTU,4212
6
+ sapiopycommons/ai/test_client.py,sha256=iPhn7cvKNLmDAXrjpmIkZpW2pDWlUhJZHDLHJbEoWsg,15673
7
+ sapiopycommons/ai/tool_service_base.py,sha256=Cj4ewRfBSiW1Tdzn4hkm9P-gDa6NS6fh4jc4TUmvNMs,45336
8
+ sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.py,sha256=8tKXwLXcqFGdQHHSEBSi6Fd7dcaCFoOqmhjzqhenb_M,2372
9
+ sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.pyi,sha256=FwtXmNAf7iYGEFm4kbqb04v77jNHbZg18ZmEDhle_bU,1444
10
+ sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py,sha256=uO25bcnfGqXpP4ggUur54Nr73Wj-DGWftExzLNcxdHI,931
11
+ sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.py,sha256=in9iHiLPYcnLWoLeqy4nWSI0jZGHD_bMhEFRIRtJPuo,20864
12
+ sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.pyi,sha256=U5zXrbBxsWilLTsRWJd1TqjdjLKFsr3enF9OJ8GfyWw,34028
13
+ sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2_grpc.py,sha256=Vj6qDKvsHgl25iBi3UjtTuGxihekgqCuufExvnJKzQI,940
14
+ sapiopycommons/ai/protoapi/plan/step_output_pb2.py,sha256=EBNCzLUDwwCqDCh35zSfFdfq0RP8WrmTMXEzEPu_1_E,2655
15
+ sapiopycommons/ai/protoapi/plan/step_output_pb2.pyi,sha256=yuxOYnDZ9DRuu-TLzaKOW_B4LUiYxTrNc2AbssXg4kE,2022
16
+ sapiopycommons/ai/protoapi/plan/step_output_pb2_grpc.py,sha256=ebWLIfOFeVE2WuUIThMBerVweH-1phviGX195UTwYyg,924
17
+ sapiopycommons/ai/protoapi/plan/step_pb2.py,sha256=mKTm_syaX99GzhWtGIPkxMTsfcsvW0QbRqjv06eHSM0,2433
18
+ sapiopycommons/ai/protoapi/plan/step_pb2.pyi,sha256=QPIcsjcUvEGQkdZMUMiVzFFNDl8yOUe_qJtf5XEp5Ck,2062
19
+ sapiopycommons/ai/protoapi/plan/step_pb2_grpc.py,sha256=1CBna5NBBxPwQhrkN8-Fim_j3FGmOfDo5C4c8sIBV8Q,917
20
+ sapiopycommons/ai/protoapi/plan/converter/converter_pb2.py,sha256=rZYBRfR0umwDYvBdYnzxR1VZSutRqunhd3QsdtQXiCM,3593
21
+ sapiopycommons/ai/protoapi/plan/converter/converter_pb2.pyi,sha256=_35yHfKTJH3SMdA5_c6qF6OZG6UwFWXpNh6dwRFDKkk,4250
22
+ sapiopycommons/ai/protoapi/plan/converter/converter_pb2_grpc.py,sha256=6T5FCmT_vEFSywUVlAlWWfBDPaILb0Dq8yCGuO_Q-BU,6448
23
+ sapiopycommons/ai/protoapi/plan/item/item_container_pb2.py,sha256=VIXmIw8-9jtH7peJZ16BEmGDfaVjjxTKhmlfcHWT82M,3863
24
+ sapiopycommons/ai/protoapi/plan/item/item_container_pb2.pyi,sha256=bbPNQDwfFDd7_S7yU99Co1O7sRhxjle-RM0_nK8jgjc,4246
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+ sapiopycommons/ai/protoapi/plan/item/item_container_pb2_grpc.py,sha256=1NzBWBUINC0Rk-NGYZ-97BVKvVUxcn_I44IjQO2h-nQ,932
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+ sapiopycommons/ai/protoapi/plan/script/script_pb2.py,sha256=swyahlxM7fKm-RqtgMd1Czqd1JrbXRw3sYqFTkjbbyM,5144
27
+ sapiopycommons/ai/protoapi/plan/script/script_pb2.pyi,sha256=GqlqLf9UX_B5vCR9cm-VoYLHFJNmZjJafcPJ6EDa8Qw,6192
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+ sapiopycommons/ai/protoapi/plan/script/script_pb2_grpc.py,sha256=ginPYpsiI6U6dB6gfWHJM8LWjSHUgcqz_gR7Dmdsyck,6864
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+ sapiopycommons/ai/protoapi/plan/tool/entry_pb2.py,sha256=yNyyyVvz94ewjGaHw3t0pUP-KH7ACg5hLC0QzrsFPis,2130
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+ sapiopycommons/ai/protoapi/plan/tool/entry_pb2.pyi,sha256=2vI0WSy0KGFHDewMSRyX5rUkmmmSaMBLvFO7txqA6Ug,2354
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+ sapiopycommons/ai/protoapi/plan/tool/entry_pb2_grpc.py,sha256=i24BfJEt7LtyROxHVEyS9RLYqLZKPvyJMKRFZj6NUTg,923
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+ sapiopycommons/ai/protoapi/plan/tool/tool_pb2.py,sha256=Gy6YjakkicKi4JthUFOxOyPLen-af7XI-ijinVs7EOY,8181
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+ sapiopycommons/ai/protoapi/plan/tool/tool_pb2.pyi,sha256=x33Ko2KC5_lw8omA1hYRGoUWvDitxNdloxswTxaMaqc,16713
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+ sapiopycommons/ai/protoapi/plan/tool/tool_pb2_grpc.py,sha256=CLSGEgSpN4D6wcE-P_5lzb2Nttjr4XjumxGUrZQSip0,6915
35
+ sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.py,sha256=MhWzTyJz3xZgpdW8_LCVKuzKXT0cv6iHMRB-UNCUNzM,2094
36
+ sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.pyi,sha256=vLYA8Tkzq2AwgVadoUp5vAg4HgGlgga0kzeS3e_XkCQ,1621
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+ sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2_grpc.py,sha256=imcciy_kbmm7OV_W3jYZ53R6GQ6Yh-eUcVW0A9GkWdg,931
4
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  sapiopycommons/callbacks/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
5
- sapiopycommons/callbacks/callback_util.py,sha256=Z1LcXnRRjXyhmcSDUwh4NzcA6ICtcbFUMKcvAqQcS8E,153811
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+ sapiopycommons/callbacks/callback_util.py,sha256=OuPJ1o6jcDQ7qV-dxrjAkJerGbVI9_9P-xu0r3ODaMM,153008
6
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  sapiopycommons/callbacks/field_builder.py,sha256=rnIP-RJafk3mZlAx1eJ8a0eSW9Ps_L6_WadCmusnENw,38772
7
- sapiopycommons/chem/IndigoMolecules.py,sha256=2oEbBTW5q4VtJFG_hRbHG7QjtTU6rJZL4lB_N-wWndo,5530
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+ sapiopycommons/chem/IndigoMolecules.py,sha256=7ucCaRMLu1zfH2uPIvXwRTSdpNcS03O1P9p_O-5B4xQ,5110
8
42
  sapiopycommons/chem/Molecules.py,sha256=mVqPn32MPMjF0iZas-5MFkS-upIdoW5OB72KKZmJRJA,12523
9
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  sapiopycommons/chem/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
10
- sapiopycommons/chem/ps_commons.py,sha256=V-g0v52cuwXejlKNH0W771Sl_HOuyMfmBzRy1b_ms9Q,36453
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  sapiopycommons/customreport/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
12
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  sapiopycommons/customreport/auto_pagers.py,sha256=89p-tik0MhsOplYje6LbAW4WClldpAmb8YXFDoXhIlY,17144
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  sapiopycommons/customreport/column_builder.py,sha256=0RO53e9rKPZ07C--KcepN6_tpRw_FxF3O9vdG0ilKG8,3014
@@ -26,19 +59,17 @@ sapiopycommons/eln/experiment_tags.py,sha256=7-fpOiSqrjbXmWIJhEhaxMgLsVCPAtKqH8x
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  sapiopycommons/eln/plate_designer.py,sha256=XFazSvhTbSy47t80-jc2tyx_-fQ_IUjKd18JQKEFcsY,13939
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  sapiopycommons/eln/step_creation.py,sha256=CFkGC-SxwAQpQlcs_obqLAVgmsNxKSGMqMtO_E6IVmw,10171
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  sapiopycommons/files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
29
- sapiopycommons/files/assay_plate_reader.py,sha256=3c2PQiiAbc2QJU9ZfNLzcTmvJrUwsbkIHO7R6R52xGU,3020
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  sapiopycommons/files/complex_data_loader.py,sha256=T39veNhvYl6j_uZjIIJ8Mk5Aa7otR5RB-g8XlAdkksA,1421
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  sapiopycommons/files/file_bridge.py,sha256=vKbqxPexi15epr_-_qLrEfYoxNxB031mXN92iVtOMqE,9511
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  sapiopycommons/files/file_bridge_handler.py,sha256=SEYDIQhSCmjI6qyLdDJE8JVKSd0WYvF7JvAq_Ahp9Do,25503
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  sapiopycommons/files/file_data_handler.py,sha256=f96MlkMuQhUCi4oLnzJK5AiuElCp5jLI8_sJkZVwpws,36779
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- sapiopycommons/files/file_text_converter.py,sha256=Gaj_divTiKXWd6flDOgrxNXpcn9fDWqxX6LUG0joePk,7516
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  sapiopycommons/files/file_util.py,sha256=djouyGjsYgWzjz2OBRnSeMDgj6NrsJUm1a2J93J8Wco,31915
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  sapiopycommons/files/file_validator.py,sha256=ryg22-93csmRO_Pv0ZpWphNkB74xWZnHyJ23K56qLj0,28761
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  sapiopycommons/files/file_writer.py,sha256=hACVl0duCjP28gJ1NPljkjagNCLod0ygUlPbvUmRDNM,17605
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- sapiopycommons/flowcyto/flow_cyto.py,sha256=B6DFquLi-gcWfJWyP4vYfwTXXJKl6O9W5-k8FzkM0Oo,2610
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+ sapiopycommons/flowcyto/flow_cyto.py,sha256=vs9WhXXKz3urpjL8QKSk56B-NSmQR3O3x_WFBKoeO10,3227
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  sapiopycommons/flowcyto/flowcyto_data.py,sha256=mYKFuLbtpJ-EsQxLGtu4tNHVlygTxKixgJxJqD68F58,2596
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  sapiopycommons/general/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
41
- sapiopycommons/general/accession_service.py,sha256=ZvtvZg7d_siMJUedjrF14mcqo5ZqVA5IJxDa5enlB-8,12792
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+ sapiopycommons/general/accession_service.py,sha256=3e__bVs7CYZ1CduLlGA9plnK7nCtdy7GXjCrNObPFgo,13484
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  sapiopycommons/general/aliases.py,sha256=VwnWf_P803pcteoAIs0DkLScVChCS5XNgryTp8FzaNc,14696
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  sapiopycommons/general/audit_log.py,sha256=sQAMcJx0cNkgZm7nTZSaGPxWvHG0_x6dBtU0jESavb4,9131
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  sapiopycommons/general/custom_report_util.py,sha256=9elLEUSgfM0gli8nRPz1uYkhaXN4Vnx3piSiNHv5IBs,19156
@@ -50,7 +81,7 @@ sapiopycommons/general/popup_util.py,sha256=HKILegU1uCL_6abNlNL0Wn3xgX2JNa_kJeq7
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  sapiopycommons/general/sapio_links.py,sha256=YkcVKNLrSGoM7tCCXBAsIbIxylctwdcEyhePrRMODe0,2859
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  sapiopycommons/general/storage_util.py,sha256=ovmK_jN7v09BoX07XxwShpBUC5WYQOM7dbKV_VeLXJU,8892
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  sapiopycommons/general/time_util.py,sha256=jU1urPoZRv6evNucR0-288EyT4PrsDpCr-H1-7BKq9A,12363
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- sapiopycommons/multimodal/multimodal.py,sha256=EP9WYzx1CvidmEBlvzO6tiF4HJwsPB1FgxpnbWzxnpA,6161
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+ sapiopycommons/multimodal/multimodal.py,sha256=PFaGJPbKvW__tnxb8KkgkJZOKjQdgxF_kGfD5chet1s,6779
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  sapiopycommons/multimodal/multimodal_data.py,sha256=0BeVPr9HaC0hNTF1v1phTIKGruvNnwerHsD994qJKBg,15099
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  sapiopycommons/processtracking/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  sapiopycommons/processtracking/custom_workflow_handler.py,sha256=eYKdYlwo8xx-6AkB_iPUBNV9yDoNvW2h_Sm3i8JpmRU,25844
@@ -66,8 +97,8 @@ sapiopycommons/sftpconnect/sftp_builder.py,sha256=lFK3FeXk-sFLefW0hqY8WGUQDeYiGa
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  sapiopycommons/webhook/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  sapiopycommons/webhook/webhook_context.py,sha256=D793uLsb1691SalaPnBUk3rOSxn_hYLhdvkaIxjNXss,1909
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  sapiopycommons/webhook/webhook_handlers.py,sha256=7o_wXOruhT9auNh8OfhJAh4WhhiPKij67FMBSpGPICc,39939
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- sapiopycommons/webhook/webservice_handlers.py,sha256=tyaYGG1-v_JJrJHZ6cy5mGCxX9z1foLw7pM4MDJlFxs,14297
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- sapiopycommons-2025.8.22a716.dist-info/METADATA,sha256=VcVFTZtBKXinxIoSA6DX_Pl7jFYdyw-YJp_1quWuVjI,3143
71
- sapiopycommons-2025.8.22a716.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
72
- sapiopycommons-2025.8.22a716.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
73
- sapiopycommons-2025.8.22a716.dist-info/RECORD,,
100
+ sapiopycommons/webhook/webservice_handlers.py,sha256=cvW6Mk_110BzYqkbk63Kg7jWrltBCDALOlkJRu8h4VQ,14300
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+ sapiopycommons-2025.8.29a719.dist-info/METADATA,sha256=t5N5pSwIbvZeE-6QXT-ocrcF60BM31hV5nZskKiD79g,3143
102
+ sapiopycommons-2025.8.29a719.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
103
+ sapiopycommons-2025.8.29a719.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
104
+ sapiopycommons-2025.8.29a719.dist-info/RECORD,,