sapiopycommons 2025.7.1a576__py3-none-any.whl → 2025.7.2a579__py3-none-any.whl

sapiopycommons/ai/tool_service_base.py

@@ -1,798 +0,0 @@
-from __future__ import annotations
-
-import json
-import logging
-import traceback
-from abc import abstractmethod, ABC
-from logging import Logger
-from typing import Any, Iterable, Sequence, Mapping
-
-from grpc import ServicerContext
-from sapiopylib.rest.User import SapioUser, ensure_logger_initialized
-from sapiopylib.rest.pojo.datatype.FieldDefinition import AbstractVeloxFieldDefinition
-
-from sapiopycommons.ai.api.fielddefinitions.proto.fields_pb2 import FieldValueMapPbo, FieldValuePbo
-from sapiopycommons.ai.api.fielddefinitions.proto.velox_field_def_pb2 import VeloxFieldDefPbo, FieldTypePbo, \
-    SelectionPropertiesPbo, IntegerPropertiesPbo, DoublePropertiesPbo, BooleanPropertiesPbo, StringPropertiesPbo
-from sapiopycommons.ai.api.plan.tool.proto.entry_pb2 import StepOutputBatchPbo, StepItemContainerPbo, DataTypePbo, \
-    StepBinaryContainerPbo, StepCsvContainerPbo, StepCsvHeaderRowPbo, StepCsvRowPbo, StepImageContainerPbo, \
-    StepJsonContainerPbo, StepTextContainerPbo, StepInputBatchPbo
-from sapiopycommons.ai.api.plan.tool.proto.tool_pb2 import ToolDetailsRequestPbo, ToolDetailsResponsePbo, \
-    ToolDetailsPbo, ProcessStepRequestPbo, ProcessStepResponsePbo, ToolOutputDetailsPbo, ToolIoConfigBasePbo, \
-    ToolInputDetailsPbo
-from sapiopycommons.ai.api.plan.tool.proto.tool_pb2_grpc import ToolServiceServicer
-from sapiopycommons.ai.api.session.proto.sapio_conn_info_pb2 import SapioUserSecretTypePbo, SapioConnectionInfoPbo
-from sapiopycommons.ai.protobuf_utils import ProtobufUtils
-from sapiopycommons.general.aliases import FieldMap, FieldValue
-
-
-class SapioToolResult(ABC):
-    """
-    A class representing a result from a Sapio tool. Instantiate one of the subclasses to create a result object.
-    """
-
-    @abstractmethod
-    def to_proto(self) -> StepOutputBatchPbo | list[FieldValueMapPbo]:
-        """
-        Convert this SapioToolResult object to a StepOutputBatchPbo or list of FieldValueMapPbo proto objects.
-        """
-        pass
-
-
-class BinaryResult(SapioToolResult):
-    """
-    A class representing binary results from a Sapio tool.
-    """
-    binary_data: list[bytes]
-
-    def __init__(self, binary_data: list[bytes]):
-        """
-        :param binary_data: The binary data as a list of bytes.
-        """
-        self.binary_data = binary_data
-
-    def to_proto(self) -> StepOutputBatchPbo | list[FieldValueMapPbo]:
-        return StepOutputBatchPbo(
-            item_container=StepItemContainerPbo(
-                dataType=DataTypePbo.BINARY,
-                binary_container=StepBinaryContainerPbo(items=self.binary_data)
-            )
-        )
-
-
-class CsvResult(SapioToolResult):
-    """
-    A class representing CSV results from a Sapio tool.
-    """
-    csv_data: list[dict[str, Any]]
-
-    def __init__(self, csv_data: list[dict[str, Any]]):
-        """
-        :param csv_data: The list of CSV data results, provided as a list of dictionaries of column name to value.
-        """
-        self.csv_data = csv_data
-
-    def to_proto(self) -> StepOutputBatchPbo | list[FieldValueMapPbo]:
-        return StepOutputBatchPbo(
-            item_container=StepItemContainerPbo(
-                dataType=DataTypePbo.CSV,
-                csv_container=StepCsvContainerPbo(
-                    header=StepCsvHeaderRowPbo(cells=self.csv_data[0].keys()),
-                    items=[StepCsvRowPbo(cells=[str(x) for x in row.values()]) for row in self.csv_data]
-                )
-            ) if self.csv_data else None
-        )
-
-
-class FieldMapResult(SapioToolResult):
-    """
-    A class representing field map results from a Sapio tool.
-    """
-    field_maps: list[FieldMap]
-
-    def __init__(self, field_maps: list[FieldMap]):
-        """
-        :param field_maps: A list of field maps, where each map is a dictionary of field names to values. Each entry
-            will create a new data record in the system, so long as the tool definition specifies an output data type
-            name.
-        """
-        self.field_maps = field_maps
-
-    def to_proto(self) -> StepOutputBatchPbo | list[FieldValueMapPbo]:
-        new_records: list[FieldValueMapPbo] = []
-        for field_map in self.field_maps:
-            fields: dict[str, FieldValuePbo] = {}
-            for field, value in field_map.items():
-                field_value = FieldValuePbo()
-                if isinstance(value, str):
-                    field_value.string_value = value
-                elif isinstance(value, int):
-                    field_value.int_value = value
-                elif isinstance(value, float):
-                    field_value.double_value = value
-                elif isinstance(value, bool):
-                    field_value.bool_value = value
-                fields[field] = field_value
-            new_records.append(FieldValueMapPbo(fields=fields))
-        return new_records
-
-
-class ImageResult(SapioToolResult):
-    """
-    A class representing image results from a Sapio tool.
-    """
-    image_format: str
-    image_data: list[bytes]
-
-    def __init__(self, image_format: str, image_data: list[bytes]):
-        """
-        :param image_format: The format of the image (e.g., PNG, JPEG).
-        :param image_data: The image data as a list of bytes. Each entry in the list represents a separate image.
-        """
-        self.image_format = image_format
-        self.image_data = image_data
-
-    def to_proto(self) -> StepOutputBatchPbo | list[FieldValueMapPbo]:
-        return StepOutputBatchPbo(
-            item_container=StepItemContainerPbo(
-                dataType=DataTypePbo.IMAGE,
-                image_container=StepImageContainerPbo(
-                    image_format=self.image_format,
-                    items=self.image_data)
-            )
-        )
-
-
-class JsonResult(SapioToolResult):
-    """
-    A class representing JSON results from a Sapio tool.
-    """
-    json_data: list[Any]
-
-    def __init__(self, json_data: list[Any]):
-        """
-        :param json_data: The list of JSON data results. Each entry in the list represents a separate JSON object.
-            These entries must be able to be serialized to JSON using json.dumps().
-        """
-        self.json_data = json_data
-
-    def to_proto(self) -> StepOutputBatchPbo | list[FieldValueMapPbo]:
-        return StepOutputBatchPbo(
-            item_container=StepItemContainerPbo(
-                dataType=DataTypePbo.JSON,
-                json_container=StepJsonContainerPbo(items=[json.dumps(x) for x in self.json_data])
-            )
-        )
-
-
-class TextResult(SapioToolResult):
-    """
-    A class representing text results from a Sapio tool.
-    """
-    text_data: list[str]
-
-    def __init__(self, text_data: list[str]):
-        """
-        :param text_data: The text data as a list of strings.
-        """
-        self.text_data = text_data
-
-    def to_proto(self) -> StepOutputBatchPbo | list[FieldValueMapPbo]:
-        return StepOutputBatchPbo(
-            item_container=StepItemContainerPbo(
-                dataType=DataTypePbo.TEXT,
-                text_container=StepTextContainerPbo(items=self.text_data)
-            )
-        )
-
-
-class ToolServiceBase(ToolServiceServicer, ABC):
-    """
-    A base class for implementing a tool service. Subclasses should implement the register_tools method to register
-    their tools with the service.
-    """
-    def GetToolDetails(self, request: ToolDetailsRequestPbo, context: ServicerContext) -> ToolDetailsResponsePbo:
-        try:
-            # Get the tool details from the registered tools.
-            details: list[ToolDetailsPbo] = self.get_details()
-            return ToolDetailsResponsePbo(tool_framework_version=self.tool_version(), tool_details=details)
-        except Exception:
-            # TODO: This response doesn't even allow logs. What should we do if an exception occurs in this case?
-            return ToolDetailsResponsePbo()
-
-    def ProcessData(self, request: ProcessStepRequestPbo, context: ServicerContext) -> ProcessStepResponsePbo:
-        try:
-            # Convert the SapioConnectionInfo proto object to a SapioUser object.
-            user = self.create_user(request.sapio_user)
-            # Get the tool results from the registered tool matching the request and convert them to proto objects.
-            output_data: list[StepOutputBatchPbo] = []
-            new_records: list[FieldValueMapPbo] = []
-            # TODO: Make use of the success value after the response object has a field for it.
-            success, results, logs = self.run(user, request, context)
-            for result in results:
-                data: StepOutputBatchPbo | list[FieldValueMapPbo] = result.to_proto()
-                if isinstance(data, StepOutputBatchPbo):
-                    output_data.append(data)
-                else:
-                    new_records.extend(data)
-            # Return a ProcessStepResponse proto object containing the output data and new records to the caller.
-            return ProcessStepResponsePbo(output=output_data, log=logs, new_records=new_records)
-        except Exception:
-            # TODO: Return a False success result after the response object has a field for it.
-            return ProcessStepResponsePbo(log=[traceback.format_exc()])
-
-    @staticmethod
-    def create_user(info: SapioConnectionInfoPbo, timeout_seconds: int = 60) -> SapioUser:
-        """
-        Create a SapioUser object from the given SapioConnectionInfo proto object.
-
-        :param info: The SapioConnectionInfo proto object.
-        :param timeout_seconds: The request timeout for calls made from this user object.
-        """
-        # TODO: Have a customizable request timeout? Would need to be added to the request object.
-        # TODO: How should the RMI hosts and port be used in the connection info?
-        user = SapioUser(info.webservice_url, True, timeout_seconds, guid=info.app_guid)
-        if info.secret_type == SapioUserSecretTypePbo.SESSION_TOKEN:
-            user.api_token = info.secret
-        elif info.secret_type == SapioUserSecretTypePbo.PASSWORD:
-            # TODO: Will the secret be base64 encoded if it's a password? That's how basic auth is normally handled.
-            user.password = info.secret
-        else:
-            raise Exception(f"Unexpected secret type: {info.secret_type}")
-        return user
-
-    @staticmethod
-    def tool_version() -> int:
-        """
-        :return: The version of this tool.
-        """
-        return 1
-
-    def _get_tools(self) -> list[ToolBase]:
-        """
-        return: Get instances of the tools registered with this service.
-        """
-        # This is complaining about the name and description not being filled from ToolBase,
-        # but none of the provided tools should have any init parameters.
-        # noinspection PyArgumentList
-        tools: list[ToolBase] = [x() for x in self.register_tools()]
-        if not tools:
-            raise Exception("No tools registered with this service.")
-        return tools
-
-    def _get_tool(self, name: str) -> ToolBase:
-        """
-        Get a specific tool instance by its name.
-
-        :param name: The name of the tool to retrieve.
-        :return: The tool object corresponding to the given name.
-        """
-        tools: dict[str, ToolBase] = {x.name: x for x in self._get_tools()}
-        if name not in tools:
-            raise Exception(f"Tool \"{name}\" not found in registered tools.")
-        return tools[name]
-
-    @abstractmethod
-    def register_tools(self) -> list[type[ToolBase]]:
-        """
-        Register the tool types with this service. Provided tools should be subclasses of ToolBase and should not have
-        any init parameters.
-
-        :return: A list of tools to register to this service.
-        """
-        pass
-
-    def get_details(self) -> list[ToolDetailsPbo]:
-        """
-        Get the details of the tool.
-
-        :return: A ToolDetailsResponse object containing the tool details.
-        """
-        tool_details: list[ToolDetailsPbo] = []
-        for tool in self._get_tools():
-            tool_details.append(tool.to_pbo())
-        return tool_details
-
-    def run(self, user: SapioUser, request: ProcessStepRequestPbo, context: ServicerContext) \
-            -> tuple[bool, list[SapioToolResult], list[str]]:
-        """
-        Execute a tool from this service.
-
-        :param user: A user object that can be used to initialize manager classes using DataMgmtServer to query the
-            system.
-        :param request: The request object containing the input data.
-        :param context: The gRPC context.
-        :return: Whether or not the tool succeeded, the results of the tool, and any logs generated by the tool.
-        """
-        tool = self._get_tool(request.tool_name)
-        try:
-            tool.setup(user, request, context)
-            results: list[SapioToolResult] = tool.run(user)
-            return True, results, tool.logs
-        except Exception as e:
-            tool.log_exception("Exception occurred during tool execution.", e)
-            return False, [], tool.logs
-
-
-class ToolBase(ABC):
-    """
-    A base class for implementing a tool.
-    """
-    name: str
-    description: str
-    data_type_name: str | None
-    inputs: list[ToolInputDetailsPbo]
-    outputs: list[ToolOutputDetailsPbo]
-    configs: list[VeloxFieldDefPbo]
-
-    logs: list[str]
-    logger: Logger
-    verbose_logging: bool
-
-    user: SapioUser
-    request: ProcessStepRequestPbo
-    context: ServicerContext
-
-    def __init__(self, name: str, description: str, data_type_name: str | None = None):
-        """
-        :param name: The name of the tool.
-        :param description: A description of the tool.
-        :param data_type_name: The name of the output data type of this tool, if applicable. When this tool returns
-            FieldMapResult objects in its run method, this name will be used to set the data type of the output data.
-        """
-        self.name = name
-        self.description = description
-        self.data_type_name = data_type_name
-        self.inputs = []
-        self.outputs = []
-        self.configs = []
-        self.logs = []
-        self.logger = logging.getLogger(f"ToolBase.{self.name}")
-        ensure_logger_initialized(self.logger)
-
-    def setup(self, user: SapioUser, request: ProcessStepRequestPbo, context: ServicerContext) -> None:
-        """
-        Setup the tool with the user, request, and context. This method can be overridden by subclasses to perform
-        additional setup.
-
-        :param user: A user object that can be used to initialize manager classes using DataMgmtServer to query the
-            system.
-        :param request: The request object containing the input data.
-        :param context: The gRPC context.
-        """
-        self.user = user
-        self.request = request
-        self.context = context
-        # TODO: Determine verbose logging from the request.
-        self.verbose_logging = False
-
-    def add_input(self, content_type: DataTypePbo, display_name: str, description: str, example: str | None = None,
-                  validation: str | None = None, input_count: tuple[int, int] | None = None, is_paged: bool = False,
-                  page_size: tuple[int, int] | None = None, max_request_bytes: int | None = None) -> None:
-        """
-        Add an input configuration to the tool. This determines how many inputs this tool will accept in the plan
-        manager, as well as what those inputs are. The IO number of the input will be set to the current number of
-        inputs. That is, the first time this is called, the IO number will be 0, the second time it is called, the IO
-        number will be 1, and so on.
-
-        :param content_type: The content type of the input.
-        :param display_name: The display name of the input.
-        :param description: The description of the input.
-        :param example: An optional example of the input.
-        :param validation: An optional validation string for the input.
-        :param input_count: A tuple of the minimum and maximum number of inputs allowed for this tool.
-        :param is_paged: If true, this input will be paged. If false, this input will not be paged.
-        :param page_size: A tuple of the minimum and maximum page size for this tool. The input must be paged in order
-            for this to have an effect.
-        :param max_request_bytes: The maximum request size in bytes for this tool.
-        """
-        self.inputs.append(ToolInputDetailsPbo(
-            base_config=ToolIoConfigBasePbo(
-                io_number=len(self.inputs),
-                content_type=ProtobufUtils.content_type_str(content_type),
-                display_name=display_name,
-                description=description,
-                example=example
-            ),
-            validation=validation,
-            min_input_count=input_count[0] if input_count else None,
-            max_input_count=input_count[1] if input_count else None,
-            paged=is_paged,
-            min_page_size=page_size[0] if page_size else None,
-            max_page_size=page_size[1] if page_size else None,
-            max_request_bytes=max_request_bytes,
-        ))
-
-    def add_output(self, content_type: DataTypePbo, display_name: str, description: str, example: str | None = None) -> None:
-        """
-        Add an output configuration to the tool. This determines how many inputs this tool will accept in the plan
-        manager, as well as what those inputs are. The IO number of the output will be set to the current number of
-        outputs. That is, the first time this is called, the IO number will be 0, the second time it is called, the IO
-        number will be 1, and so on.
-
-        :param content_type: The content type of the output.
-        :param display_name: The display name of the output.
-        :param description: The description of the output.
-        :param example: An example of the output.
-        """
-        self.outputs.append(ToolOutputDetailsPbo(
-            base_config=ToolIoConfigBasePbo(
-                io_number=len(self.outputs),
-                content_type=ProtobufUtils.content_type_str(content_type),
-                display_name=display_name,
-                description=description,
-                example=example
-            )))
-
-    def add_config_field(self, field: VeloxFieldDefPbo) -> None:
-        """
-        Add a configuration field to the tool. This field will be used to configure the tool in the plan manager.
-
-        :param field: The configuration field details.
-        """
-        self.configs.append(field)
-
-    def add_config_field_def(self, field: AbstractVeloxFieldDefinition) -> None:
-        """
-        Add a configuration field to the tool. This field will be used to configure the tool in the plan manager.
-
-        :param field: The configuration field details.
-        """
-        self.configs.append(ProtobufUtils.field_def_to_pbo(field))
-
-    def add_boolean_config_field(self, field_name: str, display_name: str, description: str, default_value: bool,
-                                 optional: bool = False) -> None:
-        """
-        Add a boolean configuration field to the tool. This field will be used to configure the tool in the plan
-        manager.
-
-        :param field_name: The name of the field.
-        :param display_name: The display name of the field.
-        :param description: The description of the field.
-        :param default_value: The default value of the field.
-        :param optional: If true, this field is optional. If false, this field is required.
-        """
-        self.configs.append(VeloxFieldDefPbo(
-            data_field_type=FieldTypePbo.BOOLEAN,
-            data_field_name=field_name,
-            display_name=display_name,
-            description=description,
-            required=not optional,
-            editable=True,
-            boolean_properties=BooleanPropertiesPbo(
-                default_value=default_value
-            )
-        ))
-
-    def add_double_config_field(self, field_name: str, display_name: str, description: str, default_value: float,
-                                min_value: float = -10.**120, max_value: float = 10.**120, precision: int = 2,
-                                optional: bool = False) -> None:
-        """
-        Add a double configuration field to the tool. This field will be used to configure the tool in the plan
-        manager.
-
-        :param field_name: The name of the field.
-        :param display_name: The display name of the field.
-        :param description: The description of the field.
-        :param default_value: The default value of the field.
-        :param min_value: The minimum value of the field.
-        :param max_value: The maximum value of the field.
-        :param precision: The precision of the field.
-        :param optional: If true, this field is optional. If false, this field is required.
-        """
-        self.configs.append(VeloxFieldDefPbo(
-            data_field_type=FieldTypePbo.DOUBLE,
-            data_field_name=field_name,
-            display_name=display_name,
-            description=description,
-            required=not optional,
-            editable=True,
-            double_properties=DoublePropertiesPbo(
-                default_value=default_value,
-                min_value=min_value,
-                max_value=max_value,
-                precision=precision
-            )
-        ))
-
-    def add_integer_config_field(self, field_name: str, display_name: str, description: str,
-                                 default_value: int, min_value: int = -2**31, max_value: int = 2**31-1,
-                                 optional: bool = False) -> None:
-        """
-        Add an integer configuration field to the tool. This field will be used to configure the tool in the plan
-        manager.
-
-        :param field_name: The name of the field.
-        :param display_name: The display name of the field.
-        :param description: The description of the field.
-        :param default_value: The default value of the field.
-        :param min_value: The minimum value of the field.
-        :param max_value: The maximum value of the field.
-        :param optional: If true, this field is optional. If false, this field is required.
-        """
-        self.configs.append(VeloxFieldDefPbo(
-            data_field_type=FieldTypePbo.INTEGER,
-            data_field_name=field_name,
-            display_name=display_name,
-            description=description,
-            required=not optional,
-            editable=True,
-            integer_properties=IntegerPropertiesPbo(
-                default_value=default_value,
-                min_value=min_value,
-                max_value=max_value
-            )
-        ))
-
-    def add_string_config_field(self, field_name: str, display_name: str, description: str,
-                                default_value: str, max_length: int = 1000, optional: bool = False) -> None:
-        """
-        Add a string configuration field to the tool. This field will be used to configure the tool in the plan
-        manager.
-
-        :param field_name: The name of the field.
-        :param display_name: The display name of the field.
-        :param description: The description of the field.
-        :param default_value: The default value of the field.
-        :param max_length: The maximum length of the field.
-        :param optional: If true, this field is optional. If false, this field is required.
-        """
-        self.configs.append(VeloxFieldDefPbo(
-            data_field_type=FieldTypePbo.STRING,
-            data_field_name=field_name,
-            display_name=display_name,
-            description=description,
-            required=not optional,
-            editable=True,
-            string_properties=StringPropertiesPbo(
-                default_value=default_value,
-                max_length=max_length
-            )
-        ))
-
-    def add_list_config_field(self, field_name: str, display_name: str, description: str, default_value: str,
-                              allowed_values: list[str], direct_edit: bool = False, optional: bool = False) -> None:
-        """
-        Add a list configuration field to the tool. This field will be used to configure the tool in the plan
-        manager.
-
-        :param field_name: The name of the field.
-        :param display_name: The display name of the field.
-        :param description: The description of the field.
-        :param default_value: The default value of the field.
-        :param allowed_values: The list of allowed values for the field.
-        :param direct_edit: If true, the user can enter a value that is not in the list of allowed values. If false,
-            the user can only select from the list of allowed values.
-        :param optional: If true, this field is optional. If false, this field is required.
-        """
-        self.configs.append(VeloxFieldDefPbo(
-            data_field_type=FieldTypePbo.SELECTION,
-            data_field_name=field_name,
-            display_name=display_name,
-            description=description,
-            required=not optional,
-            editable=True,
-            selection_properties=SelectionPropertiesPbo(
-                default_value=default_value,
-                static_list_values=allowed_values,
-                direct_edit=direct_edit,
-            )
-        ))
-
-    def add_multi_list_config_field(self, field_name: str, display_name: str, description: str,
-                                    default_value: list[str], allowed_values: list[str], direct_edit: bool = False,
-                                    optional: bool = False) -> None:
-        """
-        Add a multi-select list configuration field to the tool. This field will be used to configure the tool in the
-        plan manager.
-
-        :param field_name: The name of the field.
-        :param display_name: The display name of the field.
-        :param description: The description of the field.
-        :param default_value: The default value of the field.
-        :param allowed_values: The list of allowed values for the field.
-        :param direct_edit: If true, the user can enter a value that is not in the list of allowed values. If false,
-            the user can only select from the list of allowed values.
-        :param optional: If true, this field is optional. If false, this field is required.
-        """
-        self.configs.append(VeloxFieldDefPbo(
-            data_field_type=FieldTypePbo.SELECTION,
-            data_field_name=field_name,
-            display_name=display_name,
-            description=description,
-            required=not optional,
-            editable=True,
-            selection_properties=SelectionPropertiesPbo(
-                default_value=",".join(default_value),
-                static_list_values=allowed_values,
-                multi_select=True,
-                direct_edit=direct_edit,
-            )
-        ))
-
-    def to_pbo(self) -> ToolDetailsPbo:
-        """
-        :return: The ToolDetailsPbo proto object representing this tool.
-        """
-        return ToolDetailsPbo(
-            name=self.name,
-            description=self.description,
-            input_configs=self.inputs,
-            output_configs=self.outputs,
-            output_data_type_name=self.data_type_name,
-            config_fields=self.configs
-        )
-
-    @abstractmethod
-    def run(self, user: SapioUser) -> list[SapioToolResult]:
-        """
-        Execute this tool.
-
-        The request inputs can be accessed using the self.get_input_*() methods.
-        The request settings can be accessed using the self.get_config_fields() method.
-        The request itself can be accessed using self.request.
-
-        :param user: A user object that can be used to initialize manager classes using DataMgmtServer to query the
-            system.
-        :return: A SapioToolResults object containing the response data. Each result in the list corresponds to a
-            separate output from the tool. Field map results do not appear as tool output in the plan manager, instead
-            appearing as records related to the plan step during the run.
-        """
-        pass
-
-    def log_info(self, message: str) -> None:
-        """
-        Log an info message for this tool. If verbose logging is enabled, this message will be included in the logs
-        returned to the caller. Empty/None inputs will not be logged.
-
-        :param message: The message to log.
-        """
-        if not message:
-            return
-        if self.verbose_logging:
-            self.logs.append(f"INFO: {self.name}: {message}")
-        self.logger.info(message)
-
-    def log_warning(self, message: str) -> None:
-        """
-        Log a warning message for this tool. This message will be included in the logs returned to the caller.
-        Empty/None inputs will not be logged.
-
-        :param message: The message to log.
-        """
-        if not message:
-            return
-        self.logs.append(f"WARNING: {self.name}: {message}")
-        self.logger.warning(message)
-
-    def log_error(self, message: str) -> None:
-        """
-        Log an error message for this tool. This message will be included in the logs returned to the caller.
-        Empty/None inputs will not be logged.
-
-        :param message: The message to log.
-        """
-        if not message:
-            return
-        self.logs.append(f"ERROR: {self.name}: {message}")
-        self.logger.error(message)
-
-    def log_exception(self, message: str, e: Exception) -> None:
-        """
-        Log an exception for this tool. This message will be included in the logs returned to the caller.
-        Empty/None inputs will not be logged.
-
-        :param message: The message to log.
-        :param e: The exception to log.
-        """
-        if not message and not e:
-            return
-        self.logs.append(f"EXCEPTION: {self.name}: {message} - {e}")
-        self.logger.error(f"{message}\n{traceback.format_exc()}")
-
-    def get_input_binary(self, index: int = 0) -> list[bytes]:
-        """
-        Get the binary data from the request object.
-
-        :param index: The index of the input to parse. Defaults to 0. Used for tools that accept multiple inputs.
-        :return: The binary data from the request object.
-        """
-        return list(self.request.input[index].item_container.binary_container.items)
-
-    def get_input_csv(self, index: int = 0) -> tuple[list[str], list[dict[str, str]]]:
-        """
-        Parse the CSV data from the request object.
-
-        :param index: The index of the input to parse. Defaults to 0. Used for tools that accept multiple inputs.
-        :return: A tuple containing the header row and the data rows. The header row is a list of strings representing
-            the column names, and the data rows are a list of dictionaries where each dictionary represents a row in the
-            CSV with the column names as keys and the corresponding values as strings.
-        """
-        input_data: Sequence[StepInputBatchPbo] = self.request.input
-        ret_val: list[dict[str, str]] = []
-        headers: Iterable[str] = input_data[index].item_container.csv_container.header.cells
-        for row in input_data[index].item_container.csv_container.items:
-            row_dict: dict[str, str] = {}
-            for header, value in zip(headers, row.cells):
-                row_dict[header] = value
-            ret_val.append(row_dict)
-        return list(headers), ret_val
-
-    def get_input_images(self, index: int = 0) -> tuple[str, list[bytes]]:
-        """
-        Parse the image data from the request object.
-
-        :param index: The index of the input to parse. Defaults to 0. Used for tools that accept multiple inputs.
-        :return: A tuple containing the image format and the image data. The image format is a string representing the
-            format of the image (e.g., PNG, JPEG), and the image data is a list of bytes representing the image data.
-            Each entry in the list represents a separate image.
-        """
-        image_data: StepImageContainerPbo = self.request.input[index].item_container.image_container
-        return image_data.image_format, list(image_data.items)
-
-    def get_input_json(self, index: int = 0) -> list[list[Any]] | list[dict[str, Any]]:
-        """
-        Parse the JSON data from the request object.
-
-        :param index: The index of the input to parse. Defaults to 0. Used for tools that accept multiple inputs.
-        :return: A list of parsed JSON objects. Each entry in the list represents a separate JSON entry from the input.
-            Depending on this tool, this may be a list of dictionaries or a list of lists.
-        """
-        return [json.loads(x) for x in self.request.input[index].item_container.json_container.items]
-
-    def get_input_text(self, index: int = 0) -> list[str]:
-        """
-        Parse the text data from the request object.
-
-        :param index: The index of the input to parse. Defaults to 0. Used for tools that accept multiple inputs.
-        :return: A list of text data as strings.
-        """
-        return list(self.request.input[index].item_container.text_container.items)
-
-    def get_config_defs(self) -> dict[str, VeloxFieldDefPbo]:
-        """
-        Get the config field definitions for this tool.
-
-        :return: A dictionary of field definitions, where the keys are the field names and the values are the
-            VeloxFieldDefPbo objects representing the field definitions.
-        """
-        field_defs: dict[str, VeloxFieldDefPbo] = {}
-        for field_def in self.to_pbo().config_fields:
-            field_defs[field_def.data_field_name] = field_def
-        return field_defs
-
-    def get_config_fields(self) -> dict[str, FieldValue]:
-        """
-        Get the configuration field values from the request object. If a field is not present in the request,
-        the default value from the config definition will be returned.
-
-        :return: A dictionary of configuration field names and their values.
-        """
-        config_fields: dict[str, Any] = {}
-        raw_configs: Mapping[str, FieldValuePbo] = self.request.config_field_values
-        for field_name, field_def in self.get_config_defs().items():
-            # Use the default value if the field is not present in the request.
-            if field_name not in raw_configs:
-                config_fields[field_name] = ProtobufUtils.field_def_pbo_to_default_value(field_def)
-            else:
-                config_fields[field_name] = ProtobufUtils.field_pbo_to_value(field_def, raw_configs[field_name])
-        return config_fields
-
-    @staticmethod
-    def read_from_json(json_data: list[dict[str, Any]], key: str) -> list[Any]:
-        """
-        From a list of dictionaries, return a list of values for the given key from each dictionary. Skips null values.
-
-        :param json_data: The JSON data to read from.
-        :param key: The key to read the values from.
-        :return: A list of values corresponding to the given key in the JSON data.
-        """
-        ret_val: list[Any] = []
-        for entry in json_data:
-            if key in entry:
-                value = entry[key]
-                if isinstance(value, list):
-                    ret_val.extend(value)
-                elif value is not None:
-                    ret_val.append(value)
-        return ret_val