sapiopycommons 2025.2.6a419__py3-none-any.whl → 2025.2.6a421__py3-none-any.whl

sapiopycommons/elain/tool_of_tools.py

@@ -1,4 +1,5 @@
 import base64
+import math
 from typing import Final, Mapping, Any
 
 from pandas import DataFrame
@@ -9,7 +10,7 @@ from sapiopylib.rest.pojo.DataRecord import DataRecord
 from sapiopylib.rest.pojo.chartdata.DashboardDefinition import GaugeChartDefinition
 from sapiopylib.rest.pojo.chartdata.DashboardEnums import ChartGroupingType, ChartOperationType, ChartType
 from sapiopylib.rest.pojo.chartdata.DashboardSeries import GaugeChartSeries
-from sapiopylib.rest.pojo.datatype.FieldDefinition import AbstractVeloxFieldDefinition
+from sapiopylib.rest.pojo.datatype.FieldDefinition import AbstractVeloxFieldDefinition, FieldType
 from sapiopylib.rest.pojo.eln.ElnExperiment import ElnExperiment
 from sapiopylib.rest.pojo.eln.ExperimentEntry import ExperimentEntry
 from sapiopylib.rest.pojo.eln.ExperimentEntryCriteria import ElnEntryCriteria, ElnFormEntryUpdateCriteria, \
@@ -124,16 +125,21 @@ def create_experiment_details_from_json(user: SapioUser,
     # Determine which fields in the JSON can be used to create field definitions.
     fb = FieldBuilder()
     fields: list[AbstractVeloxFieldDefinition] = []
+    fields_by_name: dict[str, AbstractVeloxFieldDefinition] = {}
     valid_keys: list[str] = []
     display_to_field_name: dict[str, str] = {}
     for key, value in json_list[0].items():
         field_name: str = key.replace(" ", "_")
         display_to_field_name[key] = field_name
         if isinstance(value, str):
-            fields.append(fb.string_field(field_name, display_name=key))
+            field = fb.string_field(field_name, display_name=key)
+            fields.append(field)
+            fields_by_name[field_name] = field
             valid_keys.append(key)
         elif isinstance(value, (int, float)):
-            fields.append(fb.double_field(field_name, display_name=key, precision=3))
+            field = fb.double_field(field_name, display_name=key, precision=3)
+            fields.append(field)
+            fields_by_name[field_name] = field
             valid_keys.append(key)
 
     # Extract the valid field values from the JSON.
@@ -141,7 +147,12 @@ def create_experiment_details_from_json(user: SapioUser,
     for json_dict in json_list:
         field_map: dict[str, Any] = {}
         for key in valid_keys:
-            field_map[display_to_field_name[key]] = json_dict.get(key)
+            # Watch out for NaN values or other special values.
+            val: Any = json_dict.get(key)
+            if (fields_by_name[key].data_field_type == FieldType.DOUBLE
+                    and (not isinstance(val, (int, float))) or (isinstance(val, float) and math.isnan(val))):
+                val = None
+            field_map[display_to_field_name[key]] = val
         field_maps.append(field_map)
 
     detail_entry = ElnEntryCriteria(ElnEntryType.Table, entry_name,

{sapiopycommons-2025.2.6a419.dist-info → sapiopycommons-2025.2.6a421.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: sapiopycommons
-Version: 2025.2.6a419
+Version: 2025.2.6a421
 Summary: Official Sapio Python API Utilities Package
 Project-URL: Homepage, https://github.com/sapiosciences
 Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>

{sapiopycommons-2025.2.6a419.dist-info → sapiopycommons-2025.2.6a421.dist-info}/RECORD

@@ -15,7 +15,7 @@ sapiopycommons/datatype/attachment_util.py,sha256=_l2swuP8noIGAl4bwzBUEhr6YlN_OV
 sapiopycommons/datatype/data_fields.py,sha256=C6HpqtEuF0KsxhlBUprfyv1XguaXql3EYWVbh8y-IFU,4064
 sapiopycommons/datatype/pseudo_data_types.py,sha256=6TG7aJxgmUZ8FQkWBcgmbK5oy7AFFNtKOPpi1w1OOYA,27657
 sapiopycommons/elain/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sapiopycommons/elain/tool_of_tools.py,sha256=OKH9OdATK7fjXux_X3eI-pzF7x-v_WnkxtOLmCaYuvE,24703
+sapiopycommons/elain/tool_of_tools.py,sha256=laacUopEoExV5ayt7-UA1UeXczqDDJlt6AlRAug6dzQ,25237
 sapiopycommons/eln/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sapiopycommons/eln/experiment_handler.py,sha256=8hmR7sawDo9K6iBwB44QSoxlH1M91inor7dfuXQ4LKs,69323
 sapiopycommons/eln/experiment_report_util.py,sha256=EA2Iq8gW17bSEI6lPoHYQQ-fDvG4O28RWOoTPXpOlUw,36640
@@ -57,7 +57,7 @@ sapiopycommons/webhook/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3
 sapiopycommons/webhook/webhook_context.py,sha256=D793uLsb1691SalaPnBUk3rOSxn_hYLhdvkaIxjNXss,1909
 sapiopycommons/webhook/webhook_handlers.py,sha256=M5PMt-j7PpnzUQMUQDTvqwJUyJNxuFtC9wdnk5VRNpI,39703
 sapiopycommons/webhook/webservice_handlers.py,sha256=Y5dHx_UFWFuSqaoPL6Re-fsKYRuxvCWZ8bj6KSZ3jfM,14285
-sapiopycommons-2025.2.6a419.dist-info/METADATA,sha256=CHB96SeSgnLS8BhUqqSVQqpxglFo0xumGkZ8lJ5Qh78,3142
-sapiopycommons-2025.2.6a419.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
-sapiopycommons-2025.2.6a419.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
-sapiopycommons-2025.2.6a419.dist-info/RECORD,,
+sapiopycommons-2025.2.6a421.dist-info/METADATA,sha256=90F0XGGSIBnyrH9EKr1tN-ej-0XNoGxKBBXOebv3898,3142
+sapiopycommons-2025.2.6a421.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
+sapiopycommons-2025.2.6a421.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
+sapiopycommons-2025.2.6a421.dist-info/RECORD,,