sapiopycommons 2025.2.20a442__py3-none-any.whl → 2025.2.20a444__py3-none-any.whl

sapiopycommons/ai/tool_of_tools.py

@@ -2,7 +2,7 @@ import base64
 import io
 import math
 import re
-from typing import Final, Mapping, Any
+from typing import Final, Mapping, Any, cast
 
 import requests
 from pandas import DataFrame
@@ -18,7 +18,8 @@ from sapiopylib.rest.pojo.chartdata.DashboardEnums import ChartGroupingType, Cha
 from sapiopylib.rest.pojo.chartdata.DashboardSeries import GaugeChartSeries
 from sapiopylib.rest.pojo.datatype.DataType import DataTypeDefinition
 from sapiopylib.rest.pojo.datatype.DataTypeLayout import DataTypeLayout, TableLayout
-from sapiopylib.rest.pojo.datatype.FieldDefinition import AbstractVeloxFieldDefinition, FieldType
+from sapiopylib.rest.pojo.datatype.FieldDefinition import AbstractVeloxFieldDefinition, FieldType, \
+    VeloxStringFieldDefinition
 from sapiopylib.rest.pojo.eln.ElnEntryPosition import ElnEntryPosition
 from sapiopylib.rest.pojo.eln.ElnExperiment import ElnExperiment
 from sapiopylib.rest.pojo.eln.ExperimentEntry import ExperimentEntry
@@ -207,7 +208,7 @@ class AiHelper:
         self.eln_man = ElnManager(self.user)
         self.dt_man = DataTypeManager(self.user)
 
-    def call_endpoint(self, url: str, payload: Any, tab_prefix: str = "") -> Response:
+    def call_post_endpoint(self, url: str, payload: Any, tab_prefix: str = "") -> Response:
         """
         Call a tool endpoint. Constructs the tool headers and checks the response for errors for the caller.
 
@@ -221,6 +222,20 @@ class AiHelper:
         response.raise_for_status()
         return response
 
+    def call_get_endpoint(self, url: str, params: Any, tab_prefix: str = "") -> Response:
+        """
+        Call a tool endpoint. Constructs the tool headers and checks the response for errors for the caller.
+
+        :param url: The URL of the endpoint to call.
+        :param params: The query parameters to send to the endpoint.
+        :param tab_prefix: The prefix to use for the tab name that will be created by the tool.
+        :return: The Response object returned by the endpoint.
+        """
+        headers = create_tot_headers(self.user.url, self.user.username, self.user.password, self.exp_id, tab_prefix)
+        response = requests.get(url, params=params, headers=headers)
+        response.raise_for_status()
+        return response
+
     @property
     def protocol(self) -> ElnExperimentProtocol:
         """
@@ -310,17 +325,39 @@ class AiHelper:
         # Determine which fields in the JSON can be used to create field definitions.
         fb = FieldBuilder()
         fields: list[AbstractVeloxFieldDefinition] = []
-        fields_by_name: dict[str, AbstractVeloxFieldDefinition] = {}
+        fields_by_json_key: dict[str, AbstractVeloxFieldDefinition] = {}
+        string_field_lengths: dict[str, int] = {}
         for key, value in json_list[0].items():
-            field_name: str = key.replace(" ", "_")
+            # The field name is the JSON key name, but with spaces and dashes replaced by underscores and with a leading
+            # underscore added if the field name starts with a number.
+            field_name: str = key.strip()
+            if " " in field_name:
+                field_name = field_name.replace(" ", "_")
+            if "-" in field_name:
+                field_name = field_name.replace("-", "_")
+            if field_name[0].isnumeric():
+                field_name = "_" + field_name
+
             if isinstance(value, str):
                 field = fb.string_field(field_name, display_name=key)
                 fields.append(field)
-                fields_by_name[key] = field
+                fields_by_json_key[key] = field
+                string_field_lengths[key] = 100
             elif isinstance(value, (int, float)):
                 field = fb.double_field(field_name, display_name=key, precision=3)
                 fields.append(field)
-                fields_by_name[key] = field
+                fields_by_json_key[key] = field
+
+        # Determine the max length of each string field.
+        for values in json_list:
+            for key in string_field_lengths:
+                length: int = len(values.get(key)) if values.get(key) else 0
+                string_field_lengths[key] = max(string_field_lengths[key], length)
+
+        # Update the max length of each string field.
+        for key in string_field_lengths:
+            field = cast(VeloxStringFieldDefinition, fields_by_json_key[key])
+            field.max_length = string_field_lengths[key]
 
         # Sort the JSON list if requested.
         if sort_field and sort_direction != SortDirection.NONE:
@@ -340,7 +377,7 @@ class AiHelper:
         field_maps: list[dict[str, Any]] = []
         for json_dict in json_list:
             field_map: dict[str, Any] = {}
-            for key, field in fields_by_name.items():
+            for key, field in fields_by_json_key.items():
                 # Watch out for NaN values or other special values in numeric columns.
                 val: Any = json_dict.get(key)
                 if (field.data_field_type == FieldType.DOUBLE

{sapiopycommons-2025.2.20a442.dist-info → sapiopycommons-2025.2.20a444.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: sapiopycommons
-Version: 2025.2.20a442
+Version: 2025.2.20a444
 Summary: Official Sapio Python API Utilities Package
 Project-URL: Homepage, https://github.com/sapiosciences
 Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>

{sapiopycommons-2025.2.20a442.dist-info → sapiopycommons-2025.2.20a444.dist-info}/RECORD

@@ -1,6 +1,6 @@
 sapiopycommons/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sapiopycommons/ai/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sapiopycommons/ai/tool_of_tools.py,sha256=m3SBGqJhL2oBg6aPMV8XjUgizKR_S8TwfySQVOlzKC0,39090
+sapiopycommons/ai/tool_of_tools.py,sha256=iy1Hgr1DkaMZ443JynUxZFo8VJA6V6vd7R5oEwNGOIk,40983
 sapiopycommons/callbacks/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sapiopycommons/callbacks/callback_util.py,sha256=68lPK8GtE6zd8C0fQaMLxT57PtU-6HnO37Zk-u56Mrs,129933
 sapiopycommons/callbacks/field_builder.py,sha256=p2XacN99MuKk3ite8GAqstUMpixqugul2CsC4gB83-o,38620
@@ -58,7 +58,7 @@ sapiopycommons/webhook/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3
 sapiopycommons/webhook/webhook_context.py,sha256=D793uLsb1691SalaPnBUk3rOSxn_hYLhdvkaIxjNXss,1909
 sapiopycommons/webhook/webhook_handlers.py,sha256=L0HetSm43NvA5KyW3xbLpGFh2DbAaeZJVtXIEl2fvV8,39689
 sapiopycommons/webhook/webservice_handlers.py,sha256=Y5dHx_UFWFuSqaoPL6Re-fsKYRuxvCWZ8bj6KSZ3jfM,14285
-sapiopycommons-2025.2.20a442.dist-info/METADATA,sha256=3tHm4JcRFFFg41wg_HYTp6xHGi60K96ACnEFsm6ZSEE,3143
-sapiopycommons-2025.2.20a442.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
-sapiopycommons-2025.2.20a442.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
-sapiopycommons-2025.2.20a442.dist-info/RECORD,,
+sapiopycommons-2025.2.20a444.dist-info/METADATA,sha256=X6G7jM0WYEoYCvzkn_boiU4vWWlDGmnZSflU9RaZ5w4,3143
+sapiopycommons-2025.2.20a444.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
+sapiopycommons-2025.2.20a444.dist-info/licenses/LICENSE,sha256=HyVuytGSiAUQ6ErWBHTqt1iSGHhLmlC8fO7jTCuR8dU,16725
+sapiopycommons-2025.2.20a444.dist-info/RECORD,,