sapiopycommons 2024.11.10a363__py3-none-any.whl → 2024.11.12a365__py3-none-any.whl

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  1. sapiopycommons/callbacks/callback_util.py +532 -83
  2. sapiopycommons/callbacks/field_builder.py +537 -0
  3. sapiopycommons/chem/IndigoMolecules.py +1 -0
  4. sapiopycommons/chem/Molecules.py +1 -0
  5. sapiopycommons/customreport/__init__.py +0 -0
  6. sapiopycommons/customreport/column_builder.py +60 -0
  7. sapiopycommons/customreport/custom_report_builder.py +130 -0
  8. sapiopycommons/customreport/term_builder.py +299 -0
  9. sapiopycommons/datatype/attachment_util.py +11 -10
  10. sapiopycommons/datatype/data_fields.py +61 -0
  11. sapiopycommons/datatype/pseudo_data_types.py +440 -0
  12. sapiopycommons/eln/experiment_handler.py +272 -70
  13. sapiopycommons/eln/experiment_report_util.py +653 -0
  14. sapiopycommons/files/complex_data_loader.py +5 -4
  15. sapiopycommons/files/file_bridge.py +31 -24
  16. sapiopycommons/files/file_bridge_handler.py +340 -0
  17. sapiopycommons/files/file_data_handler.py +2 -5
  18. sapiopycommons/files/file_util.py +59 -9
  19. sapiopycommons/files/file_validator.py +92 -6
  20. sapiopycommons/files/file_writer.py +44 -15
  21. sapiopycommons/general/accession_service.py +375 -0
  22. sapiopycommons/general/aliases.py +207 -6
  23. sapiopycommons/general/audit_log.py +189 -0
  24. sapiopycommons/general/custom_report_util.py +212 -37
  25. sapiopycommons/general/exceptions.py +21 -8
  26. sapiopycommons/general/popup_util.py +21 -0
  27. sapiopycommons/general/sapio_links.py +50 -0
  28. sapiopycommons/general/time_util.py +8 -2
  29. sapiopycommons/multimodal/multimodal.py +146 -0
  30. sapiopycommons/multimodal/multimodal_data.py +486 -0
  31. sapiopycommons/processtracking/custom_workflow_handler.py +406 -0
  32. sapiopycommons/processtracking/endpoints.py +22 -22
  33. sapiopycommons/recordmodel/record_handler.py +481 -97
  34. sapiopycommons/rules/eln_rule_handler.py +34 -25
  35. sapiopycommons/rules/on_save_rule_handler.py +34 -31
  36. sapiopycommons/sftpconnect/__init__.py +0 -0
  37. sapiopycommons/sftpconnect/sftp_builder.py +69 -0
  38. sapiopycommons/webhook/webhook_context.py +39 -0
  39. sapiopycommons/webhook/webhook_handlers.py +201 -42
  40. sapiopycommons/webhook/webservice_handlers.py +67 -0
  41. {sapiopycommons-2024.11.10a363.dist-info → sapiopycommons-2024.11.12a365.dist-info}/METADATA +4 -2
  42. sapiopycommons-2024.11.12a365.dist-info/RECORD +57 -0
  43. sapiopycommons-2024.11.10a363.dist-info/RECORD +0 -38
  44. {sapiopycommons-2024.11.10a363.dist-info → sapiopycommons-2024.11.12a365.dist-info}/WHEEL +0 -0
  45. {sapiopycommons-2024.11.10a363.dist-info → sapiopycommons-2024.11.12a365.dist-info}/licenses/LICENSE +0 -0
@@ -1,11 +1,15 @@
1
+ from __future__ import annotations
2
+
1
3
  from collections.abc import Iterable
2
- from typing import Any
4
+ from weakref import WeakValueDictionary
3
5
 
4
6
  from sapiopylib.rest.DataRecordManagerService import DataRecordManager
5
7
  from sapiopylib.rest.User import SapioUser
8
+ from sapiopylib.rest.pojo.CustomReport import CustomReportCriteria, RawReportTerm, ReportColumn
6
9
  from sapiopylib.rest.pojo.DataRecord import DataRecord
7
10
  from sapiopylib.rest.pojo.DataRecordPaging import DataRecordPojoPageCriteria
8
- from sapiopylib.rest.pojo.webhook.WebhookContext import SapioWebhookContext
11
+ from sapiopylib.rest.pojo.datatype.FieldDefinition import FieldType
12
+ from sapiopylib.rest.pojo.eln.SapioELNEnums import ElnBaseDataType
9
13
  from sapiopylib.rest.utils.autopaging import QueryDataRecordsAutoPager, QueryDataRecordByIdListAutoPager, \
10
14
  QueryAllRecordsOfTypeAutoPager
11
15
  from sapiopylib.rest.utils.recordmodel.PyRecordModel import PyRecordModel
@@ -14,8 +18,10 @@ from sapiopylib.rest.utils.recordmodel.RecordModelManager import RecordModelMana
14
18
  from sapiopylib.rest.utils.recordmodel.RecordModelWrapper import WrappedType, WrappedRecordModel
15
19
  from sapiopylib.rest.utils.recordmodel.RelationshipPath import RelationshipPath, RelationshipNode, \
16
20
  RelationshipNodeType
21
+ from sapiopylib.rest.utils.recordmodel.ancestry import RecordModelAncestorManager
17
22
 
18
- from sapiopycommons.general.aliases import RecordModel, SapioRecord, FieldMap
23
+ from sapiopycommons.general.aliases import RecordModel, SapioRecord, FieldMap, FieldIdentifier, AliasUtil, \
24
+ FieldIdentifierMap, FieldValue, UserIdentifier, FieldIdentifierKey
19
25
  from sapiopycommons.general.custom_report_util import CustomReportUtil
20
26
  from sapiopycommons.general.exceptions import SapioException
21
27
 
@@ -30,16 +36,38 @@ class RecordHandler:
30
36
  rec_man: RecordModelManager
31
37
  inst_man: RecordModelInstanceManager
32
38
  rel_man: RecordModelRelationshipManager
39
+ an_man: RecordModelAncestorManager
40
+
41
+ __instances: WeakValueDictionary[SapioUser, RecordHandler] = WeakValueDictionary()
42
+ __initialized: bool
43
+
44
+ def __new__(cls, context: UserIdentifier):
45
+ """
46
+ :param context: The current webhook context or a user object to send requests from.
47
+ """
48
+ user = AliasUtil.to_sapio_user(context)
49
+ obj = cls.__instances.get(user)
50
+ if not obj:
51
+ obj = object.__new__(cls)
52
+ obj.__initialized = False
53
+ cls.__instances[user] = obj
54
+ return obj
33
55
 
34
- def __init__(self, context: SapioWebhookContext | SapioUser):
56
+ def __init__(self, context: UserIdentifier):
35
57
  """
36
58
  :param context: The current webhook context or a user object to send requests from.
37
59
  """
60
+ self.user = AliasUtil.to_sapio_user(context)
61
+ if self.__initialized:
62
+ return
63
+ self.__initialized = True
64
+
38
65
  self.user = context if isinstance(context, SapioUser) else context.user
39
66
  self.dr_man = DataRecordManager(self.user)
40
67
  self.rec_man = RecordModelManager(self.user)
41
68
  self.inst_man = self.rec_man.instance_manager
42
69
  self.rel_man = self.rec_man.relationship_manager
70
+ self.an_man = RecordModelAncestorManager(self.rec_man)
43
71
 
44
72
  def wrap_model(self, record: DataRecord, wrapper_type: type[WrappedType]) -> WrappedType:
45
73
  """
@@ -49,6 +77,7 @@ class RecordHandler:
49
77
  :param wrapper_type: The record model wrapper to use.
50
78
  :return: The record model for the input.
51
79
  """
80
+ self.__verify_data_type([record], wrapper_type)
52
81
  return self.inst_man.add_existing_record_of_type(record, wrapper_type)
53
82
 
54
83
  def wrap_models(self, records: Iterable[DataRecord], wrapper_type: type[WrappedType]) -> list[WrappedType]:
@@ -59,10 +88,11 @@ class RecordHandler:
59
88
  :param wrapper_type: The record model wrapper to use.
60
89
  :return: The record models for the input.
61
90
  """
91
+ self.__verify_data_type(records, wrapper_type)
62
92
  return self.inst_man.add_existing_records_of_type(list(records), wrapper_type)
63
93
 
64
- def query_models(self, wrapper_type: type[WrappedType], field: str, value_list: Iterable[Any],
65
- page_limit: int | None = None) -> list[WrappedType]:
94
+ def query_models(self, wrapper_type: type[WrappedType], field: FieldIdentifier, value_list: Iterable[FieldValue],
95
+ page_limit: int | None = None, page_size: int | None = None) -> list[WrappedType]:
66
96
  """
67
97
  Shorthand for using the data record manager to query for a list of data records by field value
68
98
  and then converting the results into a list of record models.
@@ -70,12 +100,63 @@ class RecordHandler:
70
100
  :param wrapper_type: The record model wrapper to use.
71
101
  :param field: The field to query on.
72
102
  :param value_list: The values of the field to query on.
73
- :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages.
103
+ :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages. This parameter
104
+ only functions if you set a page size or the platform enforces a page size.
105
+ :param page_size: The size of the pages to query. If None, the page size may be limited by the platform.
74
106
  :return: The record models for the queried records.
75
107
  """
76
- return self.query_models_with_criteria(wrapper_type, field, value_list, None, page_limit)[0]
108
+ criteria: DataRecordPojoPageCriteria | None = None
109
+ if page_size is not None:
110
+ criteria = DataRecordPojoPageCriteria(page_size=page_size)
111
+ return self.query_models_with_criteria(wrapper_type, field, value_list, criteria, page_limit)[0]
77
112
 
78
- def query_models_with_criteria(self, wrapper_type: type[WrappedType], field: str, value_list: Iterable[Any],
113
+ def query_and_map_models(self, wrapper_type: type[WrappedType], field: FieldIdentifier,
114
+ value_list: Iterable[FieldValue], page_limit: int | None = None,
115
+ page_size: int | None = None, *, mapping_field: FieldIdentifier | None = None) \
116
+ -> dict[FieldValue, list[WrappedType]]:
117
+ """
118
+ Shorthand for using query_models to search for records given values on a specific field and then using
119
+ map_by_field to turn the returned list into a dictionary mapping field values to records.
120
+
121
+ :param wrapper_type: The record model wrapper to use.
122
+ :param field: The field to query and map on.
123
+ :param value_list: The values of the field to query on.
124
+ :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages. This parameter
125
+ only functions if you set a page size or the platform enforces a page size.
126
+ :param page_size: The size of the pages to query. If None, the page size may be limited by the platform.
127
+ :param mapping_field: If provided, use this field to map against instead of the field that was queried on.
128
+ :return: The record models for the queried records mapped by field values to the records with that value.
129
+ """
130
+ if mapping_field is None:
131
+ mapping_field = field
132
+ return self.map_by_field(self.query_models(wrapper_type, field, value_list, page_limit, page_size),
133
+ mapping_field)
134
+
135
+ def query_and_unique_map_models(self, wrapper_type: type[WrappedType], field: FieldIdentifier,
136
+ value_list: Iterable[FieldValue], page_limit: int | None = None,
137
+ page_size: int | None = None, *, mapping_field: FieldIdentifier | None = None) \
138
+ -> dict[FieldValue, WrappedType]:
139
+ """
140
+ Shorthand for using query_models to search for records given values on a specific field and then using
141
+ map_by_unique_field to turn the returned list into a dictionary mapping field values to records.
142
+ If any two records share the same field value, throws an exception.
143
+
144
+ :param wrapper_type: The record model wrapper to use.
145
+ :param field: The field to query and map on.
146
+ :param value_list: The values of the field to query on.
147
+ :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages. This parameter
148
+ only functions if you set a page size or the platform enforces a page size.
149
+ :param page_size: The size of the pages to query. If None, the page size may be limited by the platform.
150
+ :param mapping_field: If provided, use this field to map against instead of the field that was queried on.
151
+ :return: The record models for the queried records mapped by field values to the record with that value.
152
+ """
153
+ if mapping_field is None:
154
+ mapping_field = field
155
+ return self.map_by_unique_field(self.query_models(wrapper_type, field, value_list, page_limit, page_size),
156
+ mapping_field)
157
+
158
+ def query_models_with_criteria(self, wrapper_type: type[WrappedType], field: FieldIdentifier,
159
+ value_list: Iterable[FieldValue],
79
160
  paging_criteria: DataRecordPojoPageCriteria | None = None,
80
161
  page_limit: int | None = None) \
81
162
  -> tuple[list[WrappedType], DataRecordPojoPageCriteria]:
@@ -88,26 +169,33 @@ class RecordHandler:
88
169
  :param value_list: The values of the field to query on.
89
170
  :param paging_criteria: The paging criteria to start the query with.
90
171
  :param page_limit: The maximum number of pages to query from the starting criteria. If None, exhausts all
91
- possible pages.
172
+ possible pages. This parameter only functions if you set a page size in the paging criteria or the platform
173
+ enforces a page size.
92
174
  :return: The record models for the queried records and the final paging criteria.
93
175
  """
94
176
  dt: str = wrapper_type.get_wrapper_data_type_name()
177
+ field: str = AliasUtil.to_data_field_name(field)
95
178
  pager = QueryDataRecordsAutoPager(dt, field, list(value_list), self.user, paging_criteria)
96
179
  pager.max_page = page_limit
97
180
  return self.wrap_models(pager.get_all_at_once(), wrapper_type), pager.next_page_criteria
98
181
 
99
182
  def query_models_by_id(self, wrapper_type: type[WrappedType], ids: Iterable[int],
100
- page_limit: int | None = None) -> list[WrappedType]:
183
+ page_limit: int | None = None, page_size: int | None = None) -> list[WrappedType]:
101
184
  """
102
185
  Shorthand for using the data record manager to query for a list of data records by record ID
103
186
  and then converting the results into a list of record models.
104
187
 
105
188
  :param wrapper_type: The record model wrapper to use.
106
189
  :param ids: The list of record IDs to query.
107
- :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages.
190
+ :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages. This parameter
191
+ only functions if you set a page size or the platform enforces a page size.
192
+ :param page_size: The size of the pages to query. If None, the page size may be limited by the platform.
108
193
  :return: The record models for the queried records.
109
194
  """
110
- return self.query_models_by_id_with_criteria(wrapper_type, ids, None, page_limit)[0]
195
+ criteria: DataRecordPojoPageCriteria | None = None
196
+ if page_size is not None:
197
+ criteria = DataRecordPojoPageCriteria(page_size=page_size)
198
+ return self.query_models_by_id_with_criteria(wrapper_type, ids, criteria, page_limit)[0]
111
199
 
112
200
  def query_models_by_id_with_criteria(self, wrapper_type: type[WrappedType], ids: Iterable[int],
113
201
  paging_criteria: DataRecordPojoPageCriteria | None = None,
@@ -121,7 +209,8 @@ class RecordHandler:
121
209
  :param ids: The list of record IDs to query.
122
210
  :param paging_criteria: The paging criteria to start the query with.
123
211
  :param page_limit: The maximum number of pages to query from the starting criteria. If None, exhausts all
124
- possible pages.
212
+ possible pages. This parameter only functions if you set a page size in the paging criteria or the platform
213
+ enforces a page size.
125
214
  :return: The record models for the queried records and the final paging criteria.
126
215
  """
127
216
  dt: str = wrapper_type.get_wrapper_data_type_name()
@@ -129,16 +218,38 @@ class RecordHandler:
129
218
  pager.max_page = page_limit
130
219
  return self.wrap_models(pager.get_all_at_once(), wrapper_type), pager.next_page_criteria
131
220
 
132
- def query_all_models(self, wrapper_type: type[WrappedType], page_limit: int | None = None) -> list[WrappedType]:
221
+ def query_models_by_id_and_map(self, wrapper_type: type[WrappedType], ids: Iterable[int],
222
+ page_limit: int | None = None, page_size: int | None = None) \
223
+ -> dict[int, WrappedType]:
224
+ """
225
+ Shorthand for using the data record manager to query for a list of data records by record ID
226
+ and then converting the results into a dictionary of record ID to the record model for that ID.
227
+
228
+ :param wrapper_type: The record model wrapper to use.
229
+ :param ids: The list of record IDs to query.
230
+ :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages. This parameter
231
+ only functions if you set a page size or the platform enforces a page size.
232
+ :param page_size: The size of the pages to query. If None, the page size may be limited by the platform.
233
+ :return: The record models for the queried records mapped in a dictionary by their record ID.
234
+ """
235
+ return {x.record_id: x for x in self.query_models_by_id(wrapper_type, ids, page_limit, page_size)}
236
+
237
+ def query_all_models(self, wrapper_type: type[WrappedType], page_limit: int | None = None,
238
+ page_size: int | None = None) -> list[WrappedType]:
133
239
  """
134
240
  Shorthand for using the data record manager to query for all data records of a given type
135
241
  and then converting the results into a list of record models.
136
242
 
137
243
  :param wrapper_type: The record model wrapper to use.
138
- :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages.
244
+ :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages. This parameter
245
+ only functions if you set a page size or the platform enforces a page size.
246
+ :param page_size: The size of the pages to query. If None, the page size may be limited by the platform.
139
247
  :return: The record models for the queried records.
140
248
  """
141
- return self.query_all_models_with_criteria(wrapper_type, None, page_limit)[0]
249
+ criteria: DataRecordPojoPageCriteria | None = None
250
+ if page_size is not None:
251
+ criteria = DataRecordPojoPageCriteria(page_size=page_size)
252
+ return self.query_all_models_with_criteria(wrapper_type, criteria, page_limit)[0]
142
253
 
143
254
  def query_all_models_with_criteria(self, wrapper_type: type[WrappedType],
144
255
  paging_criteria: DataRecordPojoPageCriteria | None = None,
@@ -151,7 +262,8 @@ class RecordHandler:
151
262
  :param wrapper_type: The record model wrapper to use.
152
263
  :param paging_criteria: The paging criteria to start the query with.
153
264
  :param page_limit: The maximum number of pages to query from the starting criteria. If None, exhausts all
154
- possible pages.
265
+ possible pages. This parameter only functions if you set a page size in the paging criteria or the platform
266
+ enforces a page size.
155
267
  :return: The record models for the queried records and the final paging criteria.
156
268
  """
157
269
  dt: str = wrapper_type.get_wrapper_data_type_name()
@@ -160,24 +272,58 @@ class RecordHandler:
160
272
  return self.wrap_models(pager.get_all_at_once(), wrapper_type), pager.next_page_criteria
161
273
 
162
274
  def query_models_by_report(self, wrapper_type: type[WrappedType],
163
- report_name: str,
164
- filters: dict[str, Iterable[Any]] | None = None,
165
- page_limit: int | None = None) -> list[WrappedType]:
275
+ report_name: str | RawReportTerm | CustomReportCriteria,
276
+ filters: dict[FieldIdentifierKey, Iterable[FieldValue]] | None = None,
277
+ page_limit: int | None = None,
278
+ page_size: int | None = None,
279
+ page_number: int | None = None) -> list[WrappedType]:
166
280
  """
167
- Run a system report that contains a RecordId column and query for the records with those IDs.
168
- First runs the custom report, then runs a data record manager query on the results of the custom report.
281
+ Run a report and use the results of that report to query for and return the records in the report results.
282
+ First runs the report, then runs a data record manager query on the results of the custom report.
169
283
 
170
- Will throw an exception if the given system report does not have a RecordId column.
284
+ Will throw an exception if given the name of a system report that does not have a RecordId column.
285
+ Quick and custom reports are guaranteed to have a record ID column.
286
+
287
+ Any given custom report criteria should only have columns from a single data type.
171
288
 
172
289
  :param wrapper_type: The record model wrapper to use.
173
- :param report_name: The name of the system report to run.
290
+ :param report_name: The name of a system report, or a raw report term for a quick report, or custom report
291
+ criteria for a custom report.
174
292
  :param filters: If provided, filter the results of the report using the given mapping of headers to values to
175
293
  filter on. This filtering is done before the records are queried.
176
294
  :param page_limit: The maximum number of pages to query. If None, exhausts all possible pages.
177
- :return: The record models for the queried records.
178
- """
179
- results: list[dict[str, Any]] = CustomReportUtil.run_system_report(self.user, report_name, filters, page_limit)
180
- # Using the bracket operators because we want to throw an exception if RecordId doesn't exist in the report.
295
+ :param page_size: The size of each page of results in the search. If None, the page size is set by the server.
296
+ If the input report is a custom report criteria, uses the value from the criteria, unless this value is
297
+ not None, in which case it overwrites the given report's value.
298
+ :param page_number: The page number to start the search from, If None, starts on the first page.
299
+ If the input report is a custom report criteria, uses the value from the criteria, unless this value is
300
+ not None, in which case it overwrites the given report's value.
301
+ :return: The record models for the queried records that matched the given report.
302
+ """
303
+ if isinstance(report_name, str):
304
+ results: list[dict[str, FieldValue]] = CustomReportUtil.run_system_report(self.user, report_name, filters,
305
+ page_limit, page_size, page_number)
306
+ elif isinstance(report_name, RawReportTerm):
307
+ results: list[dict[str, FieldValue]] = CustomReportUtil.run_quick_report(self.user, report_name, filters,
308
+ page_limit, page_size, page_number)
309
+ elif isinstance(report_name, CustomReportCriteria):
310
+ dt: str = wrapper_type.get_wrapper_data_type_name()
311
+ # Ensure that the root data type is the one we're looking for.
312
+ report_name.root_data_type = dt
313
+ # Raise an exception if any column in the report doesn't match the given data type.
314
+ if any([x.data_type_name != dt for x in report_name.column_list]):
315
+ raise SapioException("You may only query records from a report containing columns from that data type.")
316
+ # Enforce that the given custom report has a record ID column.
317
+ if not any([x.data_type_name == dt and x.data_field_name == "RecordId" for x in report_name.column_list]):
318
+ report_name.column_list.append(ReportColumn(dt, "RecordId", FieldType.LONG))
319
+ results: list[dict[str, FieldValue]] = CustomReportUtil.run_custom_report(self.user, report_name, filters,
320
+ page_limit, page_size, page_number)
321
+ else:
322
+ raise SapioException("Unrecognized report object.")
323
+
324
+ # Using the bracket accessor because we want to throw an exception if RecordId doesn't exist in the report.
325
+ # This should only possibly be the case with system reports, as quick reports will include the record ID and
326
+ # we forced any given custom report to have a record ID column.
181
327
  ids: list[int] = [row["RecordId"] for row in results]
182
328
  return self.query_models_by_id(wrapper_type, ids)
183
329
 
@@ -200,7 +346,8 @@ class RecordHandler:
200
346
  """
201
347
  return self.inst_man.add_new_records_of_type(num, wrapper_type)
202
348
 
203
- def add_models_with_data(self, wrapper_type: type[WrappedType], fields: list[FieldMap]) -> list[WrappedType]:
349
+ def add_models_with_data(self, wrapper_type: type[WrappedType], fields: list[FieldIdentifierMap]) \
350
+ -> list[WrappedType]:
204
351
  """
205
352
  Shorthand for using the instance manager to add new models of the given type, and then initializing all those
206
353
  models with the given fields.
@@ -210,11 +357,50 @@ class RecordHandler:
210
357
  :return: The newly added record models with the provided fields set. The records will be in the same order as
211
358
  the fields in the fields list.
212
359
  """
360
+ fields: list[FieldMap] = AliasUtil.to_data_field_names_list_dict(fields)
213
361
  models: list[WrappedType] = self.add_models(wrapper_type, len(fields))
214
- for model, field in zip(models, fields):
215
- model.set_field_values(field)
362
+ for model, field_list in zip(models, fields):
363
+ model.set_field_values(field_list)
216
364
  return models
217
365
 
366
+ def find_or_add_model(self, wrapper_type: type[WrappedType], primary_identifier: FieldIdentifier,
367
+ id_value: FieldValue, secondary_identifiers: FieldIdentifierMap | None = None) -> WrappedType:
368
+ """
369
+ Find a unique record that matches the given field values. If no such records exist, add a record model to the
370
+ cache with the identifying fields set to the desired values. This record will be created in the system when
371
+ you store and commit changes. If more than one record with the identifying values exists, throws an exception.
372
+
373
+ The record is searched for using the primary identifier field name and value. If multiple records are returned
374
+ by the query on this primary identifier, then the secondary identifiers are used to filter the results.
375
+
376
+ Makes a webservice call to query for the existing record.
377
+
378
+ :param wrapper_type: The record model wrapper to use.
379
+ :param primary_identifier: The data field name of the field to search on.
380
+ :param id_value: The value of the identifying field to search for.
381
+ :param secondary_identifiers: Optional fields used to filter the records that are returned after searching on
382
+ the primary identifier.
383
+ :return: The record model with the identifying field value, either pulled from the system or newly created.
384
+ """
385
+ # PR-46335: Initialize the secondary identifiers parameter if None is provided to avoid an exception.
386
+ # If no secondary identifiers were provided, use an empty dictionary.
387
+ if secondary_identifiers is None:
388
+ secondary_identifiers = {}
389
+
390
+ primary_identifier: str = AliasUtil.to_data_field_name(primary_identifier)
391
+ secondary_identifiers: FieldMap = AliasUtil.to_data_field_names_dict(secondary_identifiers)
392
+ unique_record: WrappedType | None = self.__find_model(wrapper_type, primary_identifier, id_value,
393
+ secondary_identifiers)
394
+ # If a unique record matched the identifiers, return it.
395
+ if unique_record is not None:
396
+ return unique_record
397
+
398
+ # If none of the results matched the identifiers, create a new record with all identifiers set.
399
+ # Put the primary identifier and value into the secondary identifiers list and use that as the fields map
400
+ # for this new record.
401
+ secondary_identifiers.update({primary_identifier: id_value})
402
+ return self.add_models_with_data(wrapper_type, [secondary_identifiers])[0]
403
+
218
404
  def create_models(self, wrapper_type: type[WrappedType], num: int) -> list[WrappedType]:
219
405
  """
220
406
  Shorthand for creating new records via the data record manager and then returning them as wrapped
@@ -229,7 +415,7 @@ class RecordHandler:
229
415
  dt: str = wrapper_type.get_wrapper_data_type_name()
230
416
  return self.wrap_models(self.dr_man.add_data_records(dt, num), wrapper_type)
231
417
 
232
- def create_models_with_data(self, wrapper_type: type[WrappedType], fields: list[FieldMap]) \
418
+ def create_models_with_data(self, wrapper_type: type[WrappedType], fields: list[FieldIdentifierMap]) \
233
419
  -> list[WrappedType]:
234
420
  """
235
421
  Shorthand for creating new records via the data record manager with field data to initialize the records with
@@ -243,10 +429,12 @@ class RecordHandler:
243
429
  :return: The newly created record models.
244
430
  """
245
431
  dt: str = wrapper_type.get_wrapper_data_type_name()
432
+ fields: list[FieldMap] = AliasUtil.to_data_field_names_list_dict(fields)
246
433
  return self.wrap_models(self.dr_man.add_data_records_with_data(dt, fields), wrapper_type)
247
434
 
248
- def find_or_create_model(self, wrapper_type: type[WrappedType], primary_identifier: str, id_value: Any,
249
- secondary_identifiers: FieldMap | None = None) -> WrappedType:
435
+ def find_or_create_model(self, wrapper_type: type[WrappedType], primary_identifier: FieldIdentifier,
436
+ id_value: FieldValue, secondary_identifiers: FieldIdentifierMap | None = None) \
437
+ -> WrappedType:
250
438
  """
251
439
  Find a unique record that matches the given field values. If no such records exist, create one with the
252
440
  identifying fields set to the desired values. If more than one record with the identifying values exists,
@@ -270,24 +458,10 @@ class RecordHandler:
270
458
  if secondary_identifiers is None:
271
459
  secondary_identifiers = {}
272
460
 
273
- # Query for all records that match the primary identifier.
274
- results: list[WrappedType] = self.query_models(wrapper_type, primary_identifier, [id_value])
275
-
276
- # Find the one record, if any, that matches the secondary identifiers.
277
- unique_record: WrappedType | None = None
278
- for result in results:
279
- matches_all: bool = True
280
- for field, value in secondary_identifiers.items():
281
- if result.get_field_value(field) != value:
282
- matches_all = False
283
- break
284
- if matches_all:
285
- # If a previous record in the results already matched all identifiers, then throw an exception.
286
- if unique_record is not None:
287
- raise SapioException(f"More than one record of type {wrapper_type.get_wrapper_data_type_name()} "
288
- f"encountered in system that matches all provided identifiers.")
289
- unique_record = result
290
-
461
+ primary_identifier: str = AliasUtil.to_data_field_name(primary_identifier)
462
+ secondary_identifiers: FieldMap = AliasUtil.to_data_field_names_dict(secondary_identifiers)
463
+ unique_record: WrappedType | None = self.__find_model(wrapper_type, primary_identifier, id_value,
464
+ secondary_identifiers)
291
465
  # If a unique record matched the identifiers, return it.
292
466
  if unique_record is not None:
293
467
  return unique_record
@@ -329,6 +503,29 @@ class RecordHandler:
329
503
  return_dict[model] = model.get_parents_of_type(parent_type)
330
504
  return return_dict
331
505
 
506
+ @staticmethod
507
+ def map_by_parent(models: Iterable[RecordModel], parent_type: type[WrappedType]) \
508
+ -> dict[WrappedType, RecordModel]:
509
+ """
510
+ Take a list of record models and map them by their parent. Essentially an inversion of map_to_parent.
511
+ If two records share the same parent, an exception will be thrown. The parents must already be loaded.
512
+
513
+ :param models: A list of record models.
514
+ :param parent_type: The record model wrapper of the parents.
515
+ :return: A dict[ParentType, ModelType]. If an input model doesn't have a parent of the given parent type,
516
+ then it will not be in the resulting dictionary.
517
+ """
518
+ to_parent: dict[RecordModel, WrappedType] = RecordHandler.map_to_parent(models, parent_type)
519
+ by_parent: dict[WrappedType, RecordModel] = {}
520
+ for record, parent in to_parent.items():
521
+ if parent is None:
522
+ continue
523
+ if parent in by_parent:
524
+ raise SapioException(f"Parent {parent.data_type_name} {parent.record_id} encountered more than once "
525
+ f"in models list.")
526
+ by_parent[parent] = record
527
+ return by_parent
528
+
332
529
  @staticmethod
333
530
  def map_by_parents(models: Iterable[RecordModel], parent_type: type[WrappedType]) \
334
531
  -> dict[WrappedType, list[RecordModel]]:
@@ -379,6 +576,29 @@ class RecordHandler:
379
576
  return_dict[model] = model.get_children_of_type(child_type)
380
577
  return return_dict
381
578
 
579
+ @staticmethod
580
+ def map_by_child(models: Iterable[RecordModel], child_type: type[WrappedType]) \
581
+ -> dict[WrappedType, RecordModel]:
582
+ """
583
+ Take a list of record models and map them by their children. Essentially an inversion of map_to_child.
584
+ If two records share the same child, an exception will be thrown. The children must already be loaded.
585
+
586
+ :param models: A list of record models.
587
+ :param child_type: The record model wrapper of the children.
588
+ :return: A dict[ChildType, ModelType]. If an input model doesn't have a child of the given child type,
589
+ then it will not be in the resulting dictionary.
590
+ """
591
+ to_child: dict[RecordModel, WrappedType] = RecordHandler.map_to_child(models, child_type)
592
+ by_child: dict[WrappedType, RecordModel] = {}
593
+ for record, child in to_child.items():
594
+ if child is None:
595
+ continue
596
+ if child in by_child:
597
+ raise SapioException(f"Child {child.data_type_name} {child.record_id} encountered more than once "
598
+ f"in models list.")
599
+ by_child[child] = record
600
+ return by_child
601
+
382
602
  @staticmethod
383
603
  def map_by_children(models: Iterable[RecordModel], child_type: type[WrappedType]) \
384
604
  -> dict[WrappedType, list[RecordModel]]:
@@ -399,7 +619,7 @@ class RecordHandler:
399
619
  return by_children
400
620
 
401
621
  @staticmethod
402
- def map_to_forward_side_link(models: Iterable[WrappedRecordModel], field_name: str,
622
+ def map_to_forward_side_link(models: Iterable[WrappedRecordModel], field_name: FieldIdentifier,
403
623
  side_link_type: type[WrappedType]) -> dict[WrappedRecordModel, WrappedType]:
404
624
  """
405
625
  Map a list of record models to their forward side link. The forward side link must already be loaded.
@@ -410,14 +630,15 @@ class RecordHandler:
410
630
  :return: A dict[ModelType, SlideLink]. If an input model doesn't have a forward side link of the given type,
411
631
  then it will map to None.
412
632
  """
633
+ field_name: str = AliasUtil.to_data_field_name(field_name)
413
634
  return_dict: dict[WrappedRecordModel, WrappedType] = {}
414
635
  for model in models:
415
636
  return_dict[model] = model.get_forward_side_link(field_name, side_link_type)
416
637
  return return_dict
417
638
 
418
639
  @staticmethod
419
- def map_by_forward_side_link(models: Iterable[WrappedRecordModel], field_name: str,
420
- side_link_type: type[WrappedType]) -> dict[WrappedType, list[WrappedRecordModel]]:
640
+ def map_by_forward_side_links(models: Iterable[WrappedRecordModel], field_name: FieldIdentifier,
641
+ side_link_type: type[WrappedType]) -> dict[WrappedType, list[WrappedRecordModel]]:
421
642
  """
422
643
  Take a list of record models and map them by their forward side link. Essentially an inversion of
423
644
  map_to_forward_side_link. Input models that share a forward side link will end up in the same list.
@@ -429,9 +650,10 @@ class RecordHandler:
429
650
  :return: A dict[SideLink, list[ModelType]]. If an input model doesn't have a forward side link of the given type
430
651
  pointing to it, then it will not be in the resulting dictionary.
431
652
  """
432
- to_side_link: dict[RecordModel, WrappedType] = RecordHandler\
653
+ field_name: str = AliasUtil.to_data_field_name(field_name)
654
+ to_side_link: dict[WrappedRecordModel, WrappedType] = RecordHandler\
433
655
  .map_to_forward_side_link(models, field_name, side_link_type)
434
- by_side_link: dict[WrappedType, list[RecordModel]] = {}
656
+ by_side_link: dict[WrappedType, list[WrappedRecordModel]] = {}
435
657
  for record, side_link in to_side_link.items():
436
658
  if side_link is None:
437
659
  continue
@@ -439,8 +661,35 @@ class RecordHandler:
439
661
  return by_side_link
440
662
 
441
663
  @staticmethod
442
- def map_to_reverse_side_links(models: Iterable[WrappedRecordModel], field_name: str,
443
- side_link_type: type[WrappedType]) -> dict[RecordModel, list[WrappedRecordModel]]:
664
+ def map_by_forward_side_link(models: Iterable[WrappedRecordModel], field_name: FieldIdentifier,
665
+ side_link_type: type[WrappedType]) -> dict[WrappedType, WrappedRecordModel]:
666
+ """
667
+ Take a list of record models and map them by their forward side link. Essentially an inversion of
668
+ map_to_forward_side_link, but if two records share the same forward link, an exception is thrown.
669
+ The forward side link must already be loaded.
670
+
671
+ :param models: A list of record models.
672
+ :param field_name: The field name on the record models where the side link is located.
673
+ :param side_link_type: The record model wrapper of the forward side links.
674
+ :return: A dict[SideLink, ModelType]. If an input model doesn't have a forward side link of the given type
675
+ pointing to it, then it will not be in the resulting dictionary.
676
+ """
677
+ field_name: str = AliasUtil.to_data_field_name(field_name)
678
+ to_side_link: dict[WrappedRecordModel, WrappedType] = RecordHandler\
679
+ .map_to_forward_side_link(models, field_name, side_link_type)
680
+ by_side_link: dict[WrappedType, WrappedRecordModel] = {}
681
+ for record, side_link in to_side_link.items():
682
+ if side_link is None:
683
+ continue
684
+ if side_link in by_side_link:
685
+ raise SapioException(f"Side link {side_link.data_type_name} {side_link.record_id} encountered more "
686
+ f"than once in models list.")
687
+ by_side_link[side_link] = record
688
+ return by_side_link
689
+
690
+ @staticmethod
691
+ def map_to_reverse_side_links(models: Iterable[WrappedRecordModel], field_name: FieldIdentifier,
692
+ side_link_type: type[WrappedType]) -> dict[WrappedRecordModel, list[WrappedType]]:
444
693
  """
445
694
  Map a list of record models to a list reverse side links of a given type. The reverse side links must already
446
695
  be loaded.
@@ -452,13 +701,38 @@ class RecordHandler:
452
701
  :return: A dict[ModelType, list[SideLink]]. If an input model doesn't have reverse side links of the given type,
453
702
  then it will map to an empty list.
454
703
  """
704
+ field_name: str = AliasUtil.to_data_field_name(field_name)
455
705
  return_dict: dict[WrappedRecordModel, list[WrappedType]] = {}
456
706
  for model in models:
457
707
  return_dict[model] = model.get_reverse_side_link(field_name, side_link_type)
458
708
  return return_dict
459
709
 
460
710
  @staticmethod
461
- def map_by_reverse_side_links(models: Iterable[WrappedRecordModel], field_name: str,
711
+ def map_to_reverse_side_link(models: Iterable[WrappedRecordModel], field_name: FieldIdentifier,
712
+ side_link_type: type[WrappedType]) -> dict[WrappedRecordModel, WrappedType]:
713
+ """
714
+ Map a list of record models to the reverse side link of a given type. If a given record has more than one
715
+ reverse side link of this type, an exception is thrown. The reverse side links must already be loaded.
716
+
717
+ :param models: A list of record models.
718
+ :param field_name: The field name on the side linked model where the side link to the given record models is
719
+ located.
720
+ :param side_link_type: The record model wrapper of the reverse side links.
721
+ :return: A dict[ModelType, SideLink]. If an input model doesn't have reverse side links of the given type,
722
+ then it will map to None.
723
+ """
724
+ field_name: str = AliasUtil.to_data_field_name(field_name)
725
+ return_dict: dict[WrappedRecordModel, WrappedType] = {}
726
+ for model in models:
727
+ links: list[WrappedType] = model.get_reverse_side_link(field_name, side_link_type)
728
+ if len(links) > 1:
729
+ raise SapioException(f"Model {model.data_type_name} {model.record_id} has more than one reverse link "
730
+ f"of type {side_link_type.get_wrapper_data_type_name()}.")
731
+ return_dict[model] = links[0] if links else None
732
+ return return_dict
733
+
734
+ @staticmethod
735
+ def map_by_reverse_side_links(models: Iterable[WrappedRecordModel], field_name: FieldIdentifier,
462
736
  side_link_type: type[WrappedType]) -> dict[WrappedType, list[WrappedRecordModel]]:
463
737
  """
464
738
  Take a list of record models and map them by their reverse side links. Essentially an inversion of
@@ -472,14 +746,43 @@ class RecordHandler:
472
746
  :return: A dict[SideLink, list[ModelType]]. If an input model doesn't have reverse side links of the given type
473
747
  pointing to it, then it will not be in the resulting dictionary.
474
748
  """
475
- to_side_links: dict[RecordModel, list[WrappedType]] = RecordHandler\
749
+ field_name: str = AliasUtil.to_data_field_name(field_name)
750
+ to_side_links: dict[WrappedRecordModel, list[WrappedType]] = RecordHandler\
476
751
  .map_to_reverse_side_links(models, field_name, side_link_type)
477
- by_side_links: dict[WrappedType, list[RecordModel]] = {}
752
+ by_side_links: dict[WrappedType, list[WrappedRecordModel]] = {}
478
753
  for record, side_links in to_side_links.items():
479
754
  for side_link in side_links:
480
755
  by_side_links.setdefault(side_link, []).append(record)
481
756
  return by_side_links
482
757
 
758
+ @staticmethod
759
+ def map_by_reverse_side_link(models: Iterable[WrappedRecordModel], field_name: FieldIdentifier,
760
+ side_link_type: type[WrappedType]) -> dict[WrappedType, WrappedRecordModel]:
761
+ """
762
+ Take a list of record models and map them by their reverse side link. Essentially an inversion of
763
+ map_to_reverse_side_link. If two records share the same reverse side link, an exception is thrown.
764
+ The reverse side links must already be loaded.
765
+
766
+ :param models: A list of record models.
767
+ :param field_name: The field name on the side linked model where the side link to the given record models is
768
+ located.
769
+ :param side_link_type: The record model wrapper of the reverse side links.
770
+ :return: A dict[SideLink, ModelType]. If an input model doesn't have a reverse side link of the given type
771
+ pointing to it, then it will not be in the resulting dictionary.
772
+ """
773
+ field_name: str = AliasUtil.to_data_field_name(field_name)
774
+ to_side_link: dict[WrappedRecordModel, WrappedType] = RecordHandler\
775
+ .map_to_reverse_side_link(models, field_name, side_link_type)
776
+ by_side_link: dict[WrappedType, WrappedRecordModel] = {}
777
+ for record, side_link in to_side_link.items():
778
+ if side_link is None:
779
+ continue
780
+ if side_link in by_side_link:
781
+ raise SapioException(f"Side link {side_link.data_type_name} {side_link.record_id} encountered more "
782
+ f"than once in models list.")
783
+ by_side_link[side_link] = record
784
+ return by_side_link
785
+
483
786
  @staticmethod
484
787
  def map_by_id(models: Iterable[SapioRecord]) -> dict[int, SapioRecord]:
485
788
  """
@@ -494,7 +797,8 @@ class RecordHandler:
494
797
  return ret_dict
495
798
 
496
799
  @staticmethod
497
- def map_by_field(models: Iterable[SapioRecord], field_name: str) -> dict[Any, list[SapioRecord]]:
800
+ def map_by_field(models: Iterable[SapioRecord], field_name: FieldIdentifier) \
801
+ -> dict[FieldValue, list[SapioRecord]]:
498
802
  """
499
803
  Map the given records by one of their fields. If any two records share the same field value, they'll appear in
500
804
  the same value list.
@@ -503,14 +807,16 @@ class RecordHandler:
503
807
  :param field_name: The field name to map against.
504
808
  :return: A dict mapping field values to the records with that value.
505
809
  """
506
- ret_dict: dict[Any, list[SapioRecord]] = {}
810
+ field_name: str = AliasUtil.to_data_field_name(field_name)
811
+ ret_dict: dict[FieldValue, list[SapioRecord]] = {}
507
812
  for model in models:
508
- val: Any = model.get_field_value(field_name)
813
+ val: FieldValue = model.get_field_value(field_name)
509
814
  ret_dict.setdefault(val, []).append(model)
510
815
  return ret_dict
511
816
 
512
817
  @staticmethod
513
- def map_by_unique_field(models: Iterable[SapioRecord], field_name: str) -> dict[Any, SapioRecord]:
818
+ def map_by_unique_field(models: Iterable[SapioRecord], field_name: FieldIdentifier) \
819
+ -> dict[FieldValue, SapioRecord]:
514
820
  """
515
821
  Uniquely map the given records by one of their fields. If any two records share the same field value, throws
516
822
  an exception.
@@ -519,16 +825,17 @@ class RecordHandler:
519
825
  :param field_name: The field name to map against.
520
826
  :return: A dict mapping field values to the record with that value.
521
827
  """
522
- ret_dict: dict[Any, SapioRecord] = {}
828
+ field_name: str = AliasUtil.to_data_field_name(field_name)
829
+ ret_dict: dict[FieldValue, SapioRecord] = {}
523
830
  for model in models:
524
- val: Any = model.get_field_value(field_name)
831
+ val: FieldValue = model.get_field_value(field_name)
525
832
  if val in ret_dict:
526
833
  raise SapioException(f"Value {val} encountered more than once in models list.")
527
834
  ret_dict.update({val: model})
528
835
  return ret_dict
529
836
 
530
837
  @staticmethod
531
- def sum_of_field(models: Iterable[SapioRecord], field_name: str) -> float:
838
+ def sum_of_field(models: Iterable[SapioRecord], field_name: FieldIdentifier) -> float:
532
839
  """
533
840
  Sum up the numeric value of a given field across all input models. Excepts that all given models have a value.
534
841
  If the field is an integer field, the value will be converted to a float.
@@ -537,13 +844,14 @@ class RecordHandler:
537
844
  :param field_name: The name of the numeric field to sum.
538
845
  :return: The sum of the field values for the collection of models.
539
846
  """
847
+ field_name: str = AliasUtil.to_data_field_name(field_name)
540
848
  field_sum: float = 0
541
849
  for model in models:
542
850
  field_sum += float(model.get_field_value(field_name))
543
851
  return field_sum
544
852
 
545
853
  @staticmethod
546
- def mean_of_field(models: Iterable[SapioRecord], field_name: str) -> float:
854
+ def mean_of_field(models: Iterable[SapioRecord], field_name: FieldIdentifier) -> float:
547
855
  """
548
856
  Calculate the mean of the numeric value of a given field across all input models. Excepts that all given models
549
857
  have a value. If the field is an integer field, the value will be converted to a float.
@@ -584,8 +892,8 @@ class RecordHandler:
584
892
  return oldest
585
893
 
586
894
  @staticmethod
587
- def values_to_field_maps(field_name: str, values: Iterable[Any], existing_fields: list[FieldMap] | None = None) \
588
- -> list[FieldMap]:
895
+ def values_to_field_maps(field_name: FieldIdentifier, values: Iterable[FieldValue],
896
+ existing_fields: list[FieldIdentifier] | None = None) -> list[FieldMap]:
589
897
  """
590
898
  Add a list of values for a specific field to a list of dictionaries pairing each value to that field name.
591
899
 
@@ -596,6 +904,8 @@ class RecordHandler:
596
904
  :return: A fields map list that contains the given values mapped by the given field name.
597
905
  """
598
906
  # Update the existing fields map list if one is given.
907
+ field_name: str = AliasUtil.to_data_field_name(field_name)
908
+ existing_fields: list[FieldMap] = AliasUtil.to_data_field_names_list_dict(existing_fields)
599
909
  if existing_fields:
600
910
  values = list(values)
601
911
  # The number of new values must match the length of the existing fields list.
@@ -616,8 +926,6 @@ class RecordHandler:
616
926
  path, if any. The hierarchy must be linear (1:1 relationship between data types at every step) and the
617
927
  relationship path must already be loaded.
618
928
 
619
- Currently, the relationship path may only contain parent/child nodes.
620
-
621
929
  :param models: A list of record models.
622
930
  :param path: The relationship path to follow.
623
931
  :param wrapper_type: The record model wrapper to use.
@@ -628,15 +936,44 @@ class RecordHandler:
628
936
  # PR-46832: Update path traversal to account for changes to RelationshipPath in Sapiopylib.
629
937
  path: list[RelationshipNode] = path.path
630
938
  for model in models:
631
- current: PyRecordModel = model if isinstance(model, PyRecordModel) else model.backing_model
939
+ current: PyRecordModel | None = model if isinstance(model, PyRecordModel) else model.backing_model
632
940
  for node in path:
633
- direction = node.direction
941
+ data_type: str = node.data_type_name
942
+ direction: RelationshipNodeType = node.direction
634
943
  if current is None:
635
944
  break
636
945
  if direction == RelationshipNodeType.CHILD:
637
- current = current.get_child_of_type(node.data_type_name)
946
+ current = current.get_child_of_type(data_type)
638
947
  elif direction == RelationshipNodeType.PARENT:
639
- current = current.get_parent_of_type(node.data_type_name)
948
+ current = current.get_parent_of_type(data_type)
949
+ elif direction == RelationshipNodeType.ANCESTOR:
950
+ ancestors: list[PyRecordModel] = list(self.an_man.get_ancestors_of_type(current, data_type))
951
+ if not ancestors:
952
+ current = None
953
+ elif len(ancestors) > 1:
954
+ raise SapioException(f"Hierarchy contains multiple ancestors of type {data_type}.")
955
+ else:
956
+ current = ancestors[0]
957
+ elif direction == RelationshipNodeType.DESCENDANT:
958
+ descendants: list[PyRecordModel] = list(self.an_man.get_descendant_of_type(current, data_type))
959
+ if not descendants:
960
+ current = None
961
+ elif len(descendants) > 1:
962
+ raise SapioException(f"Hierarchy contains multiple descendants of type {data_type}.")
963
+ else:
964
+ current = descendants[0]
965
+ elif direction == RelationshipNodeType.FORWARD_SIDE_LINK:
966
+ current = current.get_forward_side_link(node.data_field_name)
967
+ elif direction == RelationshipNodeType.REVERSE_SIDE_LINK:
968
+ field_name: str = node.data_field_name
969
+ reverse_links: list[PyRecordModel] = current.get_reverse_side_link(field_name, data_type)
970
+ if not reverse_links:
971
+ current = None
972
+ elif len(reverse_links) > 1:
973
+ raise SapioException(f"Hierarchy contains multiple reverse links of type {data_type} on field "
974
+ f"{field_name}.")
975
+ else:
976
+ current = reverse_links[0]
640
977
  else:
641
978
  raise SapioException("Unsupported path direction.")
642
979
  ret_dict.update({model: self.inst_man.wrap(current, wrapper_type) if current else None})
@@ -649,8 +986,6 @@ class RecordHandler:
649
986
  path, if any. The hierarchy may be non-linear (1:Many relationships between data types are allowed) and the
650
987
  relationship path must already be loaded.
651
988
 
652
- Currently, the relationship path may only contain parent/child nodes.
653
-
654
989
  :param models: A list of record models.
655
990
  :param path: The relationship path to follow.
656
991
  :param wrapper_type: The record model wrapper to use.
@@ -665,14 +1000,23 @@ class RecordHandler:
665
1000
  next_search: set[PyRecordModel] = set()
666
1001
  # Exhaust the records at each step in the path, then use those records for the next step.
667
1002
  for node in path:
668
- direction = node.direction
1003
+ data_type: str = node.data_type_name
1004
+ direction: RelationshipNodeType = node.direction
669
1005
  if len(current_search) == 0:
670
1006
  break
671
1007
  for search in current_search:
672
1008
  if direction == RelationshipNodeType.CHILD:
673
- next_search.update(search.get_children_of_type(node.data_type_name))
1009
+ next_search.update(search.get_children_of_type(data_type))
674
1010
  elif direction == RelationshipNodeType.PARENT:
675
- next_search.update(search.get_parents_of_type(node.data_type_name))
1011
+ next_search.update(search.get_parents_of_type(data_type))
1012
+ elif direction == RelationshipNodeType.ANCESTOR:
1013
+ next_search.update(self.an_man.get_ancestors_of_type(search, data_type))
1014
+ elif direction == RelationshipNodeType.DESCENDANT:
1015
+ next_search.update(self.an_man.get_descendant_of_type(search, data_type))
1016
+ elif direction == RelationshipNodeType.FORWARD_SIDE_LINK:
1017
+ next_search.add(search.get_forward_side_link(node.data_field_name))
1018
+ elif direction == RelationshipNodeType.REVERSE_SIDE_LINK:
1019
+ next_search.update(search.get_reverse_side_link(node.data_field_name, data_type))
676
1020
  else:
677
1021
  raise SapioException("Unsupported path direction.")
678
1022
  current_search = next_search
@@ -690,11 +1034,9 @@ class RecordHandler:
690
1034
  relationship path must already be loaded.
691
1035
 
692
1036
  The path is "flattened" by only following the first record at each step. Useful for traversing 1-to-Many-to-1
693
- relationships (e.g. a sample with is aliquoted to a number of samples, then those aliquots are pooled back
1037
+ relationships (e.g. a sample which is aliquoted to a number of samples, then those aliquots are pooled back
694
1038
  together into a single sample).
695
1039
 
696
- Currently, the relationship path may only contain parent/child nodes.
697
-
698
1040
  :param models: A list of record models.
699
1041
  :param path: The relationship path to follow.
700
1042
  :param wrapper_type: The record model wrapper to use.
@@ -707,22 +1049,64 @@ class RecordHandler:
707
1049
  for model in models:
708
1050
  current: list[PyRecordModel] = [model if isinstance(model, PyRecordModel) else model.backing_model]
709
1051
  for node in path:
710
- direction = node.direction
1052
+ data_type: str = node.data_type_name
1053
+ direction: RelationshipNodeType = node.direction
711
1054
  if len(current) == 0:
712
1055
  break
713
1056
  if direction == RelationshipNodeType.CHILD:
714
- current = current[0].get_children_of_type(node.data_type_name)
1057
+ current = current[0].get_children_of_type(data_type)
715
1058
  elif direction == RelationshipNodeType.PARENT:
716
- current = current[0].get_parents_of_type(node.data_type_name)
1059
+ current = current[0].get_parents_of_type(data_type)
1060
+ elif direction == RelationshipNodeType.ANCESTOR:
1061
+ current = list(self.an_man.get_ancestors_of_type(current[0], data_type))
1062
+ elif direction == RelationshipNodeType.DESCENDANT:
1063
+ current = list(self.an_man.get_descendant_of_type(current[0], data_type))
1064
+ elif direction == RelationshipNodeType.FORWARD_SIDE_LINK:
1065
+ current = [current[0].get_forward_side_link(node.data_field_name)]
1066
+ elif direction == RelationshipNodeType.REVERSE_SIDE_LINK:
1067
+ current = current[0].get_reverse_side_link(node.data_field_name, data_type)
717
1068
  else:
718
1069
  raise SapioException("Unsupported path direction.")
719
1070
  ret_dict.update({model: self.inst_man.wrap(current[0], wrapper_type) if current else None})
720
1071
  return ret_dict
721
1072
 
722
- def __exhaust_query_pages(self, data_type_name: str, field: str, value_list: list[Any],
723
- paging_criteria: DataRecordPojoPageCriteria | None,
724
- page_limit: int | None) \
725
- -> tuple[list[DataRecord], DataRecordPojoPageCriteria | None]:
726
- pager = QueryDataRecordsAutoPager(data_type_name, field, value_list, self.user, paging_criteria)
727
- pager.max_page = page_limit
728
- return pager.get_all_at_once(), pager.next_page_criteria
1073
+ def __find_model(self, wrapper_type: type[WrappedType], primary_identifier: str, id_value: FieldValue,
1074
+ secondary_identifiers: FieldIdentifierMap | None = None) -> WrappedType | None:
1075
+ """
1076
+ Find a record from the system that matches the given field values. The primary identifier and value is used
1077
+ to query for the record, then the secondary identifiers may be optionally provided to further filter the
1078
+ returned results. If no record is found with these filters, returns None.
1079
+ """
1080
+ # Query for all records that match the primary identifier.
1081
+ results: list[WrappedType] = self.query_models(wrapper_type, primary_identifier, [id_value])
1082
+
1083
+ # Find the one record, if any, that matches the secondary identifiers.
1084
+ unique_record: WrappedType | None = None
1085
+ for result in results:
1086
+ matches_all: bool = True
1087
+ for field, value in secondary_identifiers.items():
1088
+ if result.get_field_value(field) != value:
1089
+ matches_all = False
1090
+ break
1091
+ if matches_all:
1092
+ # If a previous record in the results already matched all identifiers, then throw an exception.
1093
+ if unique_record is not None:
1094
+ raise SapioException(f"More than one record of type {wrapper_type.get_wrapper_data_type_name()} "
1095
+ f"encountered in system that matches all provided identifiers.")
1096
+ unique_record = result
1097
+ return unique_record
1098
+
1099
+ @staticmethod
1100
+ def __verify_data_type(records: Iterable[DataRecord], wrapper_type: type[WrappedType]) -> None:
1101
+ """
1102
+ Throw an exception if the data type of the given records and wrapper don't match.
1103
+ """
1104
+ model_type: str = wrapper_type.get_wrapper_data_type_name()
1105
+ for record in records:
1106
+ record_type: str = record.data_type_name
1107
+ # Account for ELN data type records.
1108
+ if ElnBaseDataType.is_eln_type(record_type):
1109
+ record_type = ElnBaseDataType.get_base_type(record_type).data_type_name
1110
+ if record_type != model_type:
1111
+ raise SapioException(f"Data record of type {record_type} cannot be wrapped by the record model wrapper "
1112
+ f"of type {model_type}")