runnable 0.12.2__py3-none-any.whl → 0.13.0__py3-none-any.whl
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- runnable/extensions/executor/{local/implementation.py → local.py} +0 -2
- runnable/extensions/nodes.py +16 -1
- runnable/sdk.py +150 -101
- runnable/tasks.py +148 -3
- runnable-0.13.0.dist-info/METADATA +270 -0
- {runnable-0.12.2.dist-info → runnable-0.13.0.dist-info}/RECORD +9 -10
- {runnable-0.12.2.dist-info → runnable-0.13.0.dist-info}/WHEEL +1 -1
- {runnable-0.12.2.dist-info → runnable-0.13.0.dist-info}/entry_points.txt +1 -1
- runnable/extensions/executor/local/__init__.py +0 -0
- runnable-0.12.2.dist-info/METADATA +0 -453
- {runnable-0.12.2.dist-info → runnable-0.13.0.dist-info}/LICENSE +0 -0
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Metadata-Version: 2.1
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Name: runnable
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Version: 0.13.0
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Summary: A Compute agnostic pipelining software
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Home-page: https://github.com/vijayvammi/runnable
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License: Apache-2.0
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Author: Vijay Vammi
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Author-email: mesanthu@gmail.com
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Requires-Python: >=3.9,<3.13
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Classifier: License :: OSI Approved :: Apache Software License
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.9
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Provides-Extra: database
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Provides-Extra: docker
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Provides-Extra: notebook
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Requires-Dist: click
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Requires-Dist: click-plugins (>=1.1.1,<2.0.0)
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Requires-Dist: dill (>=0.3.8,<0.4.0)
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Requires-Dist: docker ; extra == "docker"
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Requires-Dist: mlflow-skinny
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Requires-Dist: ploomber-engine (>=0.0.31,<0.0.32) ; extra == "notebook"
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Requires-Dist: pydantic (>=2.5,<3.0)
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Requires-Dist: rich (>=13.5.2,<14.0.0)
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Requires-Dist: ruamel.yaml
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Requires-Dist: ruamel.yaml.clib
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Requires-Dist: sqlalchemy ; extra == "database"
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Requires-Dist: stevedore (>=3.5.0,<4.0.0)
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Requires-Dist: typing-extensions ; python_version < "3.8"
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Project-URL: Documentation, https://github.com/vijayvammi/runnable
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Project-URL: Repository, https://github.com/vijayvammi/runnable
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Description-Content-Type: text/markdown
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</p>
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<hr style="border:2px dotted orange">
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<p align="center">
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<a href="https://pypi.org/project/runnable/"><img alt="python:" src="https://img.shields.io/badge/python-3.8%20%7C%203.9%20%7C%203.10-blue.svg"></a>
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<a href="https://pypi.org/project/runnable/"><img alt="Pypi" src="https://badge.fury.io/py/runnable.svg"></a>
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<a href="https://github.com/vijayvammi/runnable/blob/main/LICENSE"><img alt"License" src="https://img.shields.io/badge/license-Apache%202.0-blue.svg"></a>
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<a href="https://github.com/psf/black"><img alt="Code style: black" src="https://img.shields.io/badge/code%20style-black-000000.svg"></a>
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<a href="https://github.com/python/mypy"><img alt="MyPy Checked" src="https://www.mypy-lang.org/static/mypy_badge.svg"></a>
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<a href="https://github.com/vijayvammi/runnable/actions/workflows/release.yaml"><img alt="Tests:" src="https://github.com/vijayvammi/runnable/actions/workflows/release.yaml/badge.svg">
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</p>
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<hr style="border:2px dotted orange">
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[Please check here for complete documentation](https://astrazeneca.github.io/runnable/)
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## Example
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The below data science flavored code is a well-known
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[iris example from scikit-learn](https://scikit-learn.org/stable/auto_examples/linear_model/plot_iris_logistic.html).
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```python
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"""
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Example of Logistic regression using scikit-learn
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https://scikit-learn.org/stable/auto_examples/linear_model/plot_iris_logistic.html
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"""
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import matplotlib.pyplot as plt
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import numpy as np
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from sklearn import datasets
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from sklearn.inspection import DecisionBoundaryDisplay
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from sklearn.linear_model import LogisticRegression
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def load_data():
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# import some data to play with
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iris = datasets.load_iris()
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X = iris.data[:, :2] # we only take the first two features.
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Y = iris.target
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return X, Y
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def model_fit(X: np.ndarray, Y: np.ndarray, C: float = 1e5):
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logreg = LogisticRegression(C=C)
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logreg.fit(X, Y)
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return logreg
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def generate_plots(X: np.ndarray, Y: np.ndarray, logreg: LogisticRegression):
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_, ax = plt.subplots(figsize=(4, 3))
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DecisionBoundaryDisplay.from_estimator(
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logreg,
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X,
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cmap=plt.cm.Paired,
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ax=ax,
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response_method="predict",
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plot_method="pcolormesh",
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shading="auto",
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xlabel="Sepal length",
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ylabel="Sepal width",
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eps=0.5,
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)
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# Plot also the training points
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plt.scatter(X[:, 0], X[:, 1], c=Y, edgecolors="k", cmap=plt.cm.Paired)
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plt.xticks(())
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plt.yticks(())
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plt.savefig("iris_logistic.png")
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# TODO: What is the right value?
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return 0.6
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## Without any orchestration
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def main():
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X, Y = load_data()
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logreg = model_fit(X, Y, C=1.0)
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generate_plots(X, Y, logreg)
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## With runnable orchestration
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def runnable_pipeline():
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# The below code can be anywhere
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from runnable import Catalog, Pipeline, PythonTask, metric, pickled
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# X, Y = load_data()
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load_data_task = PythonTask(
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function=load_data,
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name="load_data",
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returns=[pickled("X"), pickled("Y")], # (1)
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)
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# logreg = model_fit(X, Y, C=1.0)
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model_fit_task = PythonTask(
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function=model_fit,
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name="model_fit",
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returns=[pickled("logreg")],
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)
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# generate_plots(X, Y, logreg)
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generate_plots_task = PythonTask(
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function=generate_plots,
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name="generate_plots",
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terminate_with_success=True,
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catalog=Catalog(put=["iris_logistic.png"]), # (2)
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returns=[metric("score")],
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)
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pipeline = Pipeline(
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steps=[load_data_task, model_fit_task, generate_plots_task],
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) # (4)
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pipeline.execute()
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return pipeline
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if __name__ == "__main__":
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# main()
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runnable_pipeline()
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```
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1. Return two serialized objects X and Y.
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2. Store the file `iris_logistic.png` for future reference.
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3. Define the sequence of tasks.
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4. Define a pipeline with the tasks
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The difference between native driver and runnable orchestration:
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!!! tip inline end "Notebooks and Shell scripts"
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You can execute notebooks and shell scripts too!!
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They can be written just as you would want them, *plain old notebooks and scripts*.
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<div class="annotate" markdown>
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```diff
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- X, Y = load_data()
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+load_data_task = PythonTask(
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+ function=load_data,
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+ name="load_data",
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+ returns=[pickled("X"), pickled("Y")], (1)
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+ )
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-logreg = model_fit(X, Y, C=1.0)
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+model_fit_task = PythonTask(
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+ function=model_fit,
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+ name="model_fit",
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+ returns=[pickled("logreg")],
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+ )
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-generate_plots(X, Y, logreg)
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+generate_plots_task = PythonTask(
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+ function=generate_plots,
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+ name="generate_plots",
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+ terminate_with_success=True,
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+ catalog=Catalog(put=["iris_logistic.png"]), (2)
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+ )
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+pipeline = Pipeline(
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+ steps=[load_data_task, model_fit_task, generate_plots_task], (3)
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```
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</div>
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---
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- [x] ```Domain``` code remains completely independent of ```driver``` code.
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- [x] The ```driver``` function has an equivalent and intuitive runnable expression
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- [x] Reproducible by default, runnable stores metadata about code/data/config for every execution.
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- [x] The pipeline is `runnable` in any environment.
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## Documentation
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[More details about the project and how to use it available here](https://astrazeneca.github.io/runnable/).
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<hr style="border:2px dotted orange">
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## Installation
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The minimum python version that runnable supports is 3.8
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```shell
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pip install runnable
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```
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Please look at the [installation guide](https://astrazeneca.github.io/runnable-core/usage)
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for more information.
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## Pipelines can be:
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### Linear
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A simple linear pipeline with tasks either
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[python functions](https://astrazeneca.github.io/runnable-core/concepts/task/#python_functions),
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[notebooks](https://astrazeneca.github.io/runnable-core/concepts/task/#notebooks), or [shell scripts](https://astrazeneca.github.io/runnable-core/concepts/task/#shell)
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[](https://mermaid.live/edit#pako:eNpl0bFuwyAQBuBXQVdZTqTESpxMDJ0ytkszhgwnOCcoNo4OaFVZfvcSx20tGSQ4fn0wHB3o1hBIyLJOWGeDFJ3Iq7r90lfkkA9HHfmTUpnX1hFyLvrHzDLl_qB4-1BOOZGGD3TfSikvTDSNFqdj2sT2vBTr9euQlXNWjqycsN2c7UZWFMUE7udwP0L3y6JenNKiyfvz8t8_b-gavT9QJYY0PcDtjeTLptrAChriBq1JzeoeWkG4UkMKZCoN8k2Bcn1yGEN7_HYaZOBIK4h3g4EOFi-MDcgKa59SMja0_P7s_vAJ_Q_YOH6o)
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### [Parallel branches](https://astrazeneca.github.io/runnable-core/concepts/parallel)
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Execute branches in parallel
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[](https://mermaid.live/edit#pako:eNp9k01rwzAMhv-K8S4ZtJCzDzuMLmWwwkh2KMQ7eImShiZ2sB1KKf3vs52PpsWNT7LySHqlyBeciRwwwUUtTtmBSY2-YsopR8MpQUfAdCdBBekWNBpvv6-EkFICzGAtWcUTDW3wYy20M7lr5QGBK2j-anBAkH4M1z6grnjpy17xAiTwDII07jj6HK8-VnVZBspITnpjztyoVkLLJOy3Qfrdm6gQEu2370Io7WLORo84PbRoA_oOl9BBg4UHbHR58UkMWq_fxjrOnhLRx1nH0SgkjlBjh7ekxNKGc0NelDLknhePI8qf7MVNr_31nm1wwNTeM2Ao6pmf-3y3Mp7WlqA7twOnXfKs17zt-6azmim1gQL1A0NKS3EE8hKZE4Yezm3chIVFiFe4AdmwKjdv7mIjKNYHaIBiYsycySPFlF8NxzotkjPPMNGygxXu2pxp2FSslKzBpGC1Ml7IKy3krn_E7i1f_wEayTcn)
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### [loops or map](https://astrazeneca.github.io/runnable-core/concepts/map)
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Execute a pipeline over an iterable parameter.
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[](https://mermaid.live/edit#pako:eNqVlF1rwjAUhv9KyG4qKNR-3AS2m8nuBgN3Z0Sy5tQG20SSdE7E_76kVVEr2CY3Ied9Tx6Sk3PAmeKACc5LtcsKpi36nlGZFbXciHwfLN79CuWiBLMcEULWGkBSaeosA2OCxbxdXMd89Get2bZASsLiSyuvQE2mJZXIjW27t2rOmQZ3Gp9rD6UjatWnwy7q6zPPukd50WTydmemEiS_QbQ79RwxGoQY9UaMuojRA8TCXexzyHgQZNwbMu5Cxl3IXNX6OWMyiDHpzZh0GZMHjOK3xz2mgxjT3oxplzG9MPp5_nVOhwJjteDwOg3HyFj3L1dCcvh7DUc-iftX18n6Waet1xX8cG908vpKHO6OW7cvkeHm5GR2b3drdvaSGTODHLW37mxabYC8fLgRhlfxpjNdwmEets-Dx7gCXTHBXQc8-D2KbQEVUEzckjO9oZjKo9Ox2qr5XmaYWF3DGNdbzizMBHOVVWGSs9K4XeDCKv3ZttSmsx7_AYa341E)
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### [Arbitrary nesting](https://astrazeneca.github.io/runnable-core/concepts/nesting/)
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Any nesting of parallel within map and so on.
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runnable/extensions/executor/k8s_job/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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22
22
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runnable/extensions/executor/k8s_job/implementation_FF.py,sha256=1IfVG1GRcJcVFzQ-WhkJsmzdJuj51QMxXylY9UrWM0U,10259
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23
23
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runnable/extensions/executor/k8s_job/integration_FF.py,sha256=pG6HKhPMgCRIgu1PAnBvsfJQE1FxcjuSiC2I-Hn5sWo,2165
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24
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-
runnable/extensions/executor/local
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25
|
-
runnable/extensions/executor/local/implementation.py,sha256=e8Tzv-FgQmJeUXVut96jeNERTR83JVG_zkQZMEjCVAs,2469
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24
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+
runnable/extensions/executor/local.py,sha256=pV1tP9lRn6hwZtt-moKM1SXG_QmohbEF2QGdBbzCpkU,2396
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26
25
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runnable/extensions/executor/local_container/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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27
26
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runnable/extensions/executor/local_container/implementation.py,sha256=6iwt9tNCQawVEfIErzoqys2hrErWK0DHcAOkO49Ov9w,17322
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28
27
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runnable/extensions/executor/mocked/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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29
28
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runnable/extensions/executor/mocked/implementation.py,sha256=ChvlcLGpBxO6QwJcoqhBgKBR6NfWVnMdOWKQhMgcEjY,5762
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30
29
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runnable/extensions/executor/retry/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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31
30
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runnable/extensions/executor/retry/implementation.py,sha256=-g6PBOhSG7IL4D_IlQOcf9H_En9IXiUzCt-6vKeCB6Q,6892
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32
|
-
runnable/extensions/nodes.py,sha256=
|
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31
|
+
runnable/extensions/nodes.py,sha256=Jz8uJBgvcpdZ8R63EWtzULFE_DjSwsrWgY0P1Z1PYTs,33506
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|
33
32
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runnable/extensions/run_log_store/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
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34
33
|
runnable/extensions/run_log_store/chunked_file_system/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
35
34
|
runnable/extensions/run_log_store/chunked_file_system/implementation.py,sha256=EW2P8lr3eH-pIOsMTJPr5eb-iWc48GQ97W15JzkpC_4,3326
|
|
@@ -53,12 +52,12 @@ runnable/names.py,sha256=vn92Kv9ANROYSZX6Z4z1v_WA3WiEdIYmG6KEStBFZug,8134
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53
52
|
runnable/nodes.py,sha256=UqR-bJx0Hi7uLSUw_saB7VsNdFh3POKtdgsEPsasHfE,16576
|
|
54
53
|
runnable/parameters.py,sha256=yZkMDnwnkdYXIwQ8LflBzn50Y0xRGxEvLlxwno6ovvs,5163
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55
54
|
runnable/pickler.py,sha256=5SDNf0miMUJ3ZauhQdzwk8_t-9jeOqaTjP5bvRnu9sU,2685
|
|
56
|
-
runnable/sdk.py,sha256=
|
|
55
|
+
runnable/sdk.py,sha256=sZWiyGVIqaAmmJuc4p1OhuqLBSqS7svN1VuSOqeZ_xA,29254
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|
57
56
|
runnable/secrets.py,sha256=dakb7WRloWVo-KpQp6Vy4rwFdGi58BTlT4OifQY106I,2324
|
|
58
|
-
runnable/tasks.py,sha256=
|
|
57
|
+
runnable/tasks.py,sha256=61BYi5DNyTPi8GRlIy8vh2T0DZ1jkTj7gxBx88sK_XY,28058
|
|
59
58
|
runnable/utils.py,sha256=fXOLoFZKYqh3wQgzA2V-VZOu-dSgLPGqCZIbMmsNzOw,20016
|
|
60
|
-
runnable-0.
|
|
61
|
-
runnable-0.
|
|
62
|
-
runnable-0.
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63
|
-
runnable-0.
|
|
64
|
-
runnable-0.
|
|
59
|
+
runnable-0.13.0.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
|
|
60
|
+
runnable-0.13.0.dist-info/METADATA,sha256=p4fwokQJKU8EJfniOP_DW22yDgSSZmltZDP2reYlBck,10436
|
|
61
|
+
runnable-0.13.0.dist-info/WHEEL,sha256=Nq82e9rUAnEjt98J6MlVmMCZb-t9cYE2Ir1kpBmnWfs,88
|
|
62
|
+
runnable-0.13.0.dist-info/entry_points.txt,sha256=cl_K9XPV-qnAVaXfmNuGpZZKaoUu8YwjPsqZW1iSKlo,1479
|
|
63
|
+
runnable-0.13.0.dist-info/RECORD,,
|
|
@@ -7,7 +7,7 @@ runnable=runnable.cli:cli
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|
7
7
|
|
|
8
8
|
[executor]
|
|
9
9
|
argo=runnable.extensions.executor.argo.implementation:ArgoExecutor
|
|
10
|
-
local=runnable.extensions.executor.local
|
|
10
|
+
local=runnable.extensions.executor.local:LocalExecutor
|
|
11
11
|
local-container=runnable.extensions.executor.local_container.implementation:LocalContainerExecutor
|
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12
12
|
mocked=runnable.extensions.executor.mocked.implementation:MockedExecutor
|
|
13
13
|
retry=runnable.extensions.executor.retry.implementation:RetryExecutor
|
|
File without changes
|