runnable 0.12.1__py3-none-any.whl → 0.12.3__py3-none-any.whl
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- runnable/__init__.py +2 -0
- runnable/defaults.py +1 -1
- runnable/entrypoints.py +7 -6
- runnable/extensions/executor/__init__.py +10 -0
- runnable/extensions/executor/local_container/implementation.py +54 -1
- runnable/sdk.py +150 -101
- runnable/tasks.py +23 -24
- runnable-0.12.3.dist-info/METADATA +270 -0
- {runnable-0.12.1.dist-info → runnable-0.12.3.dist-info}/RECORD +12 -12
- {runnable-0.12.1.dist-info → runnable-0.12.3.dist-info}/entry_points.txt +1 -0
- runnable-0.12.1.dist-info/METADATA +0 -453
- {runnable-0.12.1.dist-info → runnable-0.12.3.dist-info}/LICENSE +0 -0
- {runnable-0.12.1.dist-info → runnable-0.12.3.dist-info}/WHEEL +0 -0
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Metadata-Version: 2.1
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Name: runnable
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Version: 0.12.1
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Summary: A Compute agnostic pipelining software
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Home-page: https://github.com/vijayvammi/runnable
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License: Apache-2.0
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Author: Vijay Vammi
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Author-email: mesanthu@gmail.com
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Requires-Python: >=3.9,<3.13
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Classifier: License :: OSI Approved :: Apache Software License
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.9
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Provides-Extra: database
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Provides-Extra: docker
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Provides-Extra: notebook
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Requires-Dist: click
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Requires-Dist: click-plugins (>=1.1.1,<2.0.0)
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Requires-Dist: dill (>=0.3.8,<0.4.0)
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Requires-Dist: docker ; extra == "docker"
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Requires-Dist: mlflow-skinny
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Requires-Dist: ploomber-engine (>=0.0.31,<0.0.32) ; extra == "notebook"
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Requires-Dist: pydantic (>=2.5,<3.0)
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Requires-Dist: rich (>=13.5.2,<14.0.0)
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Requires-Dist: ruamel.yaml
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Requires-Dist: ruamel.yaml.clib
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Requires-Dist: sqlalchemy ; extra == "database"
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Requires-Dist: stevedore (>=3.5.0,<4.0.0)
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Requires-Dist: typing-extensions ; python_version < "3.8"
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Project-URL: Documentation, https://github.com/vijayvammi/runnable
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Project-URL: Repository, https://github.com/vijayvammi/runnable
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Description-Content-Type: text/markdown
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\___)
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</p>
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<p align="center">
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<a href="https://pypi.org/project/runnable/"><img alt="python:" src="https://img.shields.io/badge/python-3.8%20%7C%203.9%20%7C%203.10-blue.svg"></a>
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<a href="https://pypi.org/project/runnable/"><img alt="Pypi" src="https://badge.fury.io/py/runnable.svg"></a>
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<a href="https://github.com/vijayvammi/runnable/blob/main/LICENSE"><img alt"License" src="https://img.shields.io/badge/license-Apache%202.0-blue.svg"></a>
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<a href="https://github.com/psf/black"><img alt="Code style: black" src="https://img.shields.io/badge/code%20style-black-000000.svg"></a>
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<a href="https://github.com/python/mypy"><img alt="MyPy Checked" src="https://www.mypy-lang.org/static/mypy_badge.svg"></a>
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<a href="https://github.com/vijayvammi/runnable/actions/workflows/release.yaml"><img alt="Tests:" src="https://github.com/vijayvammi/runnable/actions/workflows/release.yaml/badge.svg">
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<a href="https://github.com/vijayvammi/runnable/actions/workflows/docs.yaml"><img alt="Docs:" src="https://github.com/vijayvammi/runnable/actions/workflows/docs.yaml/badge.svg">
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</p>
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<hr style="border:2px dotted orange">
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runnable is a simplified workflow definition language that helps in:
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- **Streamlined Design Process:** runnable enables users to efficiently plan their pipelines with
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[stubbed nodes](https://astrazeneca.github.io/runnable-core/concepts/stub), along with offering support for various structures such as
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[tasks](https://astrazeneca.github.io/runnable-core/concepts/task), [parallel branches](https://astrazeneca.github.io/runnable-core/concepts/parallel), and [loops or map branches](https://astrazeneca.github.io/runnable-core/concepts/map)
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in both [yaml](https://astrazeneca.github.io/runnable-core/concepts/pipeline) or a [python SDK](https://astrazeneca.github.io/runnable-core/sdk) for maximum flexibility.
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- **Incremental Development:** Build your pipeline piece by piece with runnable, which allows for the
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implementation of tasks as [python functions](https://astrazeneca.github.io/runnable-core/concepts/task/#python_functions),
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[notebooks](https://astrazeneca.github.io/runnable-core/concepts/task/#notebooks), or [shell scripts](https://astrazeneca.github.io/runnable-core/concepts/task/#shell),
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adapting to the developer's preferred tools and methods.
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- **Robust Testing:** Ensure your pipeline performs as expected with the ability to test using sampled data. runnable
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also provides the capability to [mock and patch tasks](https://astrazeneca.github.io/runnable-core/configurations/executors/mocked)
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for thorough evaluation before full-scale deployment.
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- **Seamless Deployment:** Transition from the development stage to production with ease.
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runnable simplifies the process by requiring [only configuration changes](https://astrazeneca.github.io/runnable-core/configurations/overview)
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to adapt to different environments, including support for [argo workflows](https://astrazeneca.github.io/runnable-core/configurations/executors/argo).
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- **Efficient Debugging:** Quickly identify and resolve issues in pipeline execution with runnable's local
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debugging features. Retrieve data from failed tasks and [retry failures](https://astrazeneca.github.io/runnable-core/concepts/run-log/#retrying_failures)
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using your chosen debugging tools to maintain a smooth development experience.
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Along with the developer friendly features, runnable also acts as an interface to production grade concepts
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such as [data catalog](https://astrazeneca.github.io/runnable-core/concepts/catalog), [reproducibility](https://astrazeneca.github.io/runnable-core/concepts/run-log),
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[experiment tracking](https://astrazeneca.github.io/runnable-core/concepts/experiment-tracking)
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and secure [access to secrets](https://astrazeneca.github.io/runnable-core/concepts/secrets).
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<hr style="border:2px dotted orange">
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## What does it do?
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
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<hr style="border:2px dotted orange">
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## Documentation
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[More details about the project and how to use it available here](https://astrazeneca.github.io/runnable-core/).
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<hr style="border:2px dotted orange">
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## Installation
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The minimum python version that runnable supports is 3.8
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```shell
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pip install runnable
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```
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Please look at the [installation guide](https://astrazeneca.github.io/runnable-core/usage)
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for more information.
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<hr style="border:2px dotted orange">
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## Example
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Your application code. Use pydantic models as DTO.
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Assumed to be present at ```functions.py```
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```python
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from pydantic import BaseModel
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class InnerModel(BaseModel):
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"""
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A pydantic model representing a group of related parameters.
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"""
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foo: int
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bar: str
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class Parameter(BaseModel):
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"""
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A pydantic model representing the parameters of the whole pipeline.
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"""
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x: int
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y: InnerModel
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def return_parameter() -> Parameter:
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"""
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The annotation of the return type of the function is not mandatory
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but it is a good practice.
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Returns:
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Parameter: The parameters that should be used in downstream steps.
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"""
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# Return type of a function should be a pydantic model
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return Parameter(x=1, y=InnerModel(foo=10, bar="hello world"))
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def display_parameter(x: int, y: InnerModel):
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"""
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Annotating the arguments of the function is important for
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runnable to understand the type of parameters you want.
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Input args can be a pydantic model or the individual attributes.
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"""
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print(x)
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# >>> prints 1
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print(y)
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# >>> prints InnerModel(foo=10, bar="hello world")
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```
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### Application code using driver functions.
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The code is runnable without any orchestration framework.
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```python
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from functions import return_parameter, display_parameter
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my_param = return_parameter()
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display_parameter(my_param.x, my_param.y)
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```
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### Orchestration using runnable
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<table>
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<tr>
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<th>python SDK</th>
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<th>yaml</th>
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</tr>
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<tr>
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<td valign="top"><p>
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Example present at: ```examples/python-tasks.py```
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Run it as: ```python examples/python-tasks.py```
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```python
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from runnable import Pipeline, Task
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def main():
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step1 = Task(
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name="step1",
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command="examples.functions.return_parameter",
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)
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step2 = Task(
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name="step2",
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command="examples.functions.display_parameter",
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terminate_with_success=True,
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)
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step1 >> step2
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pipeline = Pipeline(
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start_at=step1,
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steps=[step1, step2],
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add_terminal_nodes=True,
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)
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pipeline.execute()
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if __name__ == "__main__":
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main()
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```
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Example present at: ```examples/python-tasks.yaml```
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Execute via the cli: ```runnable execute -f examples/python-tasks.yaml```
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```yaml
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dag:
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description: |
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This is a simple pipeline that does 3 steps in sequence.
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In this example:
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1. First step: returns a "parameter" x as a Pydantic model
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2. Second step: Consumes that parameter and prints it
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This pipeline demonstrates one way to pass small data from one step to another.
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start_at: step 1
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steps:
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step 1:
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type: task
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command_type: python # (2)
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command: examples.functions.return_parameter # (1)
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next: step 2
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step 2:
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type: task
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command_type: python
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command: examples.functions.display_parameter
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next: success
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success:
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type: success
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fail:
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type: fail
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```
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</table>
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### Transpile to argo workflows
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No code change, just change the configuration.
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```yaml
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executor:
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type: "argo"
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config:
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image: runnable:demo
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persistent_volumes:
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- name: runnable-volume
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mount_path: /mnt
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run_log_store:
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type: file-system
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config:
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log_folder: /mnt/run_log_store
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```
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More details can be found in [argo configuration](https://astrazeneca.github.io/runnable-core/configurations/executors/argo).
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Execute the code as ```runnable execute -f examples/python-tasks.yaml -c examples/configs/argo-config.yam```
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<details>
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<summary>Expand</summary>
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```yaml
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apiVersion: argoproj.io/v1alpha1
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kind: Workflow
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metadata:
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generateName: runnable-dag-
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annotations: {}
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labels: {}
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spec:
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activeDeadlineSeconds: 172800
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entrypoint: runnable-dag
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podGC:
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strategy: OnPodCompletion
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retryStrategy:
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limit: '0'
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retryPolicy: Always
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backoff:
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duration: '120'
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factor: 2
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maxDuration: '3600'
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serviceAccountName: default-editor
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templates:
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- name: runnable-dag
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failFast: true
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dag:
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tasks:
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- name: step-1-task-uvdp7h
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template: step-1-task-uvdp7h
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depends: ''
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- name: step-2-task-772vg3
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template: step-2-task-772vg3
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depends: step-1-task-uvdp7h.Succeeded
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- name: success-success-igzq2e
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template: success-success-igzq2e
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depends: step-2-task-772vg3.Succeeded
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- name: step-1-task-uvdp7h
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container:
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image: runnable:demo
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command:
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- runnable
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- execute_single_node
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- '{{workflow.parameters.run_id}}'
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- step%1
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- --log-level
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- WARNING
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- --file
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- examples/python-tasks.yaml
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- --config-file
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- examples/configs/argo-config.yaml
|
352
|
-
volumeMounts:
|
353
|
-
- name: executor-0
|
354
|
-
mountPath: /mnt
|
355
|
-
imagePullPolicy: ''
|
356
|
-
resources:
|
357
|
-
limits:
|
358
|
-
memory: 1Gi
|
359
|
-
cpu: 250m
|
360
|
-
requests:
|
361
|
-
memory: 1Gi
|
362
|
-
cpu: 250m
|
363
|
-
- name: step-2-task-772vg3
|
364
|
-
container:
|
365
|
-
image: runnable:demo
|
366
|
-
command:
|
367
|
-
- runnable
|
368
|
-
- execute_single_node
|
369
|
-
- '{{workflow.parameters.run_id}}'
|
370
|
-
- step%2
|
371
|
-
- --log-level
|
372
|
-
- WARNING
|
373
|
-
- --file
|
374
|
-
- examples/python-tasks.yaml
|
375
|
-
- --config-file
|
376
|
-
- examples/configs/argo-config.yaml
|
377
|
-
volumeMounts:
|
378
|
-
- name: executor-0
|
379
|
-
mountPath: /mnt
|
380
|
-
imagePullPolicy: ''
|
381
|
-
resources:
|
382
|
-
limits:
|
383
|
-
memory: 1Gi
|
384
|
-
cpu: 250m
|
385
|
-
requests:
|
386
|
-
memory: 1Gi
|
387
|
-
cpu: 250m
|
388
|
-
- name: success-success-igzq2e
|
389
|
-
container:
|
390
|
-
image: runnable:demo
|
391
|
-
command:
|
392
|
-
- runnable
|
393
|
-
- execute_single_node
|
394
|
-
- '{{workflow.parameters.run_id}}'
|
395
|
-
- success
|
396
|
-
- --log-level
|
397
|
-
- WARNING
|
398
|
-
- --file
|
399
|
-
- examples/python-tasks.yaml
|
400
|
-
- --config-file
|
401
|
-
- examples/configs/argo-config.yaml
|
402
|
-
volumeMounts:
|
403
|
-
- name: executor-0
|
404
|
-
mountPath: /mnt
|
405
|
-
imagePullPolicy: ''
|
406
|
-
resources:
|
407
|
-
limits:
|
408
|
-
memory: 1Gi
|
409
|
-
cpu: 250m
|
410
|
-
requests:
|
411
|
-
memory: 1Gi
|
412
|
-
cpu: 250m
|
413
|
-
templateDefaults:
|
414
|
-
activeDeadlineSeconds: 7200
|
415
|
-
timeout: 10800s
|
416
|
-
arguments:
|
417
|
-
parameters:
|
418
|
-
- name: run_id
|
419
|
-
value: '{{workflow.uid}}'
|
420
|
-
volumes:
|
421
|
-
- name: executor-0
|
422
|
-
persistentVolumeClaim:
|
423
|
-
claimName: runnable-volume
|
424
|
-
|
425
|
-
```
|
426
|
-
|
427
|
-
</details>
|
428
|
-
|
429
|
-
## Pipelines can be:
|
430
|
-
|
431
|
-
### Linear
|
432
|
-
|
433
|
-
A simple linear pipeline with tasks either
|
434
|
-
[python functions](https://astrazeneca.github.io/runnable-core/concepts/task/#python_functions),
|
435
|
-
[notebooks](https://astrazeneca.github.io/runnable-core/concepts/task/#notebooks), or [shell scripts](https://astrazeneca.github.io/runnable-core/concepts/task/#shell)
|
436
|
-
|
437
|
-
[](https://mermaid.live/edit#pako:eNpl0bFuwyAQBuBXQVdZTqTESpxMDJ0ytkszhgwnOCcoNo4OaFVZfvcSx20tGSQ4fn0wHB3o1hBIyLJOWGeDFJ3Iq7r90lfkkA9HHfmTUpnX1hFyLvrHzDLl_qB4-1BOOZGGD3TfSikvTDSNFqdj2sT2vBTr9euQlXNWjqycsN2c7UZWFMUE7udwP0L3y6JenNKiyfvz8t8_b-gavT9QJYY0PcDtjeTLptrAChriBq1JzeoeWkG4UkMKZCoN8k2Bcn1yGEN7_HYaZOBIK4h3g4EOFi-MDcgKa59SMja0_P7s_vAJ_Q_YOH6o)
|
438
|
-
|
439
|
-
### [Parallel branches](https://astrazeneca.github.io/runnable-core/concepts/parallel)
|
440
|
-
|
441
|
-
Execute branches in parallel
|
442
|
-
|
443
|
-
[](https://mermaid.live/edit#pako:eNp9k01rwzAMhv-K8S4ZtJCzDzuMLmWwwkh2KMQ7eImShiZ2sB1KKf3vs52PpsWNT7LySHqlyBeciRwwwUUtTtmBSY2-YsopR8MpQUfAdCdBBekWNBpvv6-EkFICzGAtWcUTDW3wYy20M7lr5QGBK2j-anBAkH4M1z6grnjpy17xAiTwDII07jj6HK8-VnVZBspITnpjztyoVkLLJOy3Qfrdm6gQEu2370Io7WLORo84PbRoA_oOl9BBg4UHbHR58UkMWq_fxjrOnhLRx1nH0SgkjlBjh7ekxNKGc0NelDLknhePI8qf7MVNr_31nm1wwNTeM2Ao6pmf-3y3Mp7WlqA7twOnXfKs17zt-6azmim1gQL1A0NKS3EE8hKZE4Yezm3chIVFiFe4AdmwKjdv7mIjKNYHaIBiYsycySPFlF8NxzotkjPPMNGygxXu2pxp2FSslKzBpGC1Ml7IKy3krn_E7i1f_wEayTcn)
|
444
|
-
|
445
|
-
### [loops or map](https://astrazeneca.github.io/runnable-core/concepts/map)
|
446
|
-
|
447
|
-
Execute a pipeline over an iterable parameter.
|
448
|
-
|
449
|
-
[](https://mermaid.live/edit#pako:eNqVlF1rwjAUhv9KyG4qKNR-3AS2m8nuBgN3Z0Sy5tQG20SSdE7E_76kVVEr2CY3Ied9Tx6Sk3PAmeKACc5LtcsKpi36nlGZFbXciHwfLN79CuWiBLMcEULWGkBSaeosA2OCxbxdXMd89Get2bZASsLiSyuvQE2mJZXIjW27t2rOmQZ3Gp9rD6UjatWnwy7q6zPPukd50WTydmemEiS_QbQ79RwxGoQY9UaMuojRA8TCXexzyHgQZNwbMu5Cxl3IXNX6OWMyiDHpzZh0GZMHjOK3xz2mgxjT3oxplzG9MPp5_nVOhwJjteDwOg3HyFj3L1dCcvh7DUc-iftX18n6Waet1xX8cG908vpKHO6OW7cvkeHm5GR2b3drdvaSGTODHLW37mxabYC8fLgRhlfxpjNdwmEets-Dx7gCXTHBXQc8-D2KbQEVUEzckjO9oZjKo9Ox2qr5XmaYWF3DGNdbzizMBHOVVWGSs9K4XeDCKv3ZttSmsx7_AYa341E)
|
450
|
-
|
451
|
-
### [Arbitrary nesting](https://astrazeneca.github.io/runnable-core/concepts/nesting/)
|
452
|
-
Any nesting of parallel within map and so on.
|
453
|
-
|
File without changes
|
File without changes
|