rosetta-eclab 0.1.1__py3-none-any.whl

rosetta_eclab/cli.py

@@ -0,0 +1,113 @@
+"""rosetta: name the columns of a BioLogic EC-Lab .mpr file that your parser does not know.
+
+  rosetta FILE.mpr                      # name every column unknown to galvani (default reference parser)
+  rosetta FILE.mpr --reference yadg     # ... unknown to yadg instead
+  rosetta FILE.mpr --self-check         # also hide each known column in turn and report how many come back right
+  rosetta FILE.mpr --json               # machine-readable output
+
+No language model and no network access: names come from physical relations,
+storage types and column shapes (namer/library.py), with a statistics fallback.
+Every answer carries its evidence; "ABSTAIN" means the data does not support a name.
+"""
+
+from __future__ import annotations
+
+import argparse
+import json
+import sys
+import warnings
+
+from spike2 import vocab
+
+from . import mprfile
+from .evaluate import answer
+
+
+def unit_of(name: str) -> str:
+    e = next((v for v in vocab.vocabulary() if v["name"] == name), None)
+    return " or ".join(e["units"]) if e and e["units"] else ""
+
+
+def own_group(path: str) -> str | None:
+    """If the file is one of the public files behind the statistics table, leave its group out (no self-matches)."""
+    from pathlib import Path
+
+    from spike2 import corpus
+
+    return corpus.source_group(Path(path).name)
+
+
+def name_unknown(m: mprfile.MprData) -> list[dict]:
+    known = [c for c in m.columns if c.known]
+    out = []
+    for c in m.unknown:
+        a = answer(c.values, c.dtype, known, m.technique, vocab.names(), exclude_group=own_group(m.path))
+        out.append({"column_id": c.raw_id, "dtype": c.dtype, "verdict": a["verdict"], "name": a.get("name"),
+                    "unit": unit_of(a["name"]) if a["verdict"] == "NAME" else "", "confidence": a.get("confidence"),
+                    "duplicate_of": a.get("duplicate_of", ""), "alternatives": a.get("alternatives", []),
+                    "evidence": a.get("evidence", "")})
+    return out
+
+
+def self_check(m: mprfile.MprData) -> dict:
+    known = [c for c in m.columns if c.known]
+    rows = []
+    for c in known:
+        others = [o for o in known if o is not c]
+        a = answer(c.values, c.dtype, others, m.technique, vocab.names(), exclude_group=own_group(m.path))
+        rows.append({"column": c.name, "verdict": a["verdict"], "answer": a.get("name"),
+                     "correct": a["verdict"] == "NAME" and a.get("name") == vocab.canonical(c.name)})
+    named = [r for r in rows if r["verdict"] == "NAME"]
+    return {"hidden_one_at_a_time": len(rows), "named": len(named), "named_correctly": sum(r["correct"] for r in rows),
+            "wrong": [r for r in named if not r["correct"]], "rows": rows}
+
+
+def main(argv: list[str] | None = None) -> int:
+    warnings.filterwarnings("ignore")
+    sys.stdout.reconfigure(encoding="utf-8")
+    ap = argparse.ArgumentParser(prog="rosetta", description=__doc__.splitlines()[0])
+    ap.add_argument("file")
+    ap.add_argument("--reference", choices=["galvani", "yadg"], default="galvani",
+                    help="parser whose column map defines 'known' (default: galvani)")
+    ap.add_argument("--self-check", action="store_true", help="hide each known column in turn and try to name it")
+    ap.add_argument("--json", action="store_true")
+    a = ap.parse_args(argv)
+    try:
+        m = mprfile.read(a.file, a.reference)
+    except Exception as exc:
+        print(f"rosetta: {exc}", file=sys.stderr)
+        return 2
+    result = {"file": a.file, "technique": m.technique, "rows": m.n_points, "record_bytes": m.record_size,
+              "notes": m.notes, "unknown_columns": name_unknown(m)}
+    if a.self_check:
+        result["self_check"] = self_check(m)
+    if a.json:
+        print(json.dumps(result, indent=1, ensure_ascii=False, default=float))
+        return 0
+    print(f"{a.file}\n  technique {m.technique or 'unknown'}, {m.n_points} rows, {m.record_size} bytes per record")
+    for n in m.notes:
+        print(f"  {n}")
+    if not result["unknown_columns"]:
+        print(f"  every column is known to {a.reference}; nothing to name")
+    for u in result["unknown_columns"]:
+        if u["verdict"] == "NAME":
+            head = f"{u['name']} [{u['unit'] or 'no unit'}]  (confidence {u['confidence']})"
+        elif u["verdict"] == "DUPLICATE":
+            head = f"DUPLICATE of {u['duplicate_of']} (identical in every row)"
+        else:
+            head = "ABSTAIN (the data does not support a name)"
+        print(f"\n  column ID {u['column_id']} ({u['dtype']}): {head}")
+        print(f"    evidence: {u['evidence']}")
+        if u["alternatives"]:
+            print(f"    also considered: {', '.join(u['alternatives'])}")
+    if a.self_check:
+        s = result["self_check"]
+        print(f"\n  self-check: hid each of {s['hidden_one_at_a_time']} known columns in turn; named {s['named']}, "
+              f"{s['named_correctly']} correctly, {len(s['wrong'])} wrong, the rest abstained")
+        for w in s["wrong"]:
+            print(f"    wrong: {w['column']} -> {w['answer']}")
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())

rosetta_eclab/data/stats.json

@@ -0,0 +1 @@
+{"rows": [["bcd.issue_241.mpr", "BCD", "time"], ["bcd.issue_241.mpr", "BCD", "control"], ["bcd.issue_241.mpr", "BCD", "Ewe"], ["bcd.issue_241.mpr", "BCD", "I"], ["bcd.issue_241.mpr", "BCD", "dq"], ["bcd.issue_241.mpr", "BCD", "(Q-Qo)"], ["bcd.issue_241.mpr", "BCD", "I Range"], ["bcd.issue_241.mpr", "BCD", "Q charge or discharge"], ["bcd.issue_241.mpr", "BCD", "half cycle"], ["bio_logic", null, "time"], ["bio_logic", null, "Ewe"], ["bio_logic", null, "Ns"], ["bio_logic", null, "time"], ["bio_logic", null, "control"], ["bio_logic", null, "Ewe"], ["bio_logic", null, "dq"], ["bio_logic", null, "Pwe"], ["bio_logic", null, "time"], ["bio_logic", null, "control"], ["bio_logic", null, "Ewe"], ["bio_logic", null, "I"], ["bio_logic", null, "dQ"], ["bio_logic", null, "Pwe"], ["bio_logic", null, "time"], ["bio_logic", null, "control"], ["bio_logic", null, "Ewe"], ["bio_logic", null, "I"], ["bio_logic", null, "cycle number"], ["bio_logic", null, "(Q-Qo)"], ["ca.issue_134.mpr", "CA", "time"], ["ca.issue_134.mpr", "CA", "Ewe"], ["ca.issue_134.mpr", "CA", "I"], ["ca.issue_134.mpr", "CA", "(Q-Qo)"], ["ca.issue_134.mpr", "CA", "dQ"], ["ca.issue_134.mpr", "CA", "Q charge or discharge"], ["ca.issue_134.mpr", "CA", "half cycle"], ["ca.issue_134.mpr", "CA", "Capacitance charge"], ["issue_149", "CA", "time"], ["issue_149", "CA", "control"], ["issue_149", "CA", "Ewe"], ["issue_149", "CA", "I"], ["issue_149", "CA", "dQ"], ["issue_149", "CA", "(Q-Qo)"], ["issue_149", "CA", "I Range"], ["issue_149", "CA", "Q charge or discharge"], ["issue_149", "CA", "half cycle"], ["issue_149", "CA", "Pwe"], ["ca.mpr", "CA", "time"], ["ca.mpr", "CA", "Ewe"], ["ca.mpr", "CA", "I"], ["ca.mpr", "CA", "dQ"], ["ca.mpr", "CA", "(Q-Qo)"], ["ca.mpr", "CA", "I Range"], ["ca.mpr", "CA", "Q charge or discharge"], ["ca.mpr", "CA", "Energy we charge"], ["ca.mpr", "CA", "Capacitance charge"], ["issue_185", "coC", "time"], ["issue_185", "coC", "control"], ["issue_185", "coC", "Ewe"], ["issue_185", "coC", "I"], ["issue_185", "coC", "dq"], ["issue_185", "coC", "dQ"], ["issue_185", "coC", "(Q-Qo)"], ["issue_185", "coC", "I Range"], ["issue_185", "coC", "Q charge or discharge"], ["issue_185", "coC", "Energy we charge"], ["issue_185", "coC", "Capacitance charge"], ["issue_185", "coC", "step time"], ["issue_185", "coV", "time"], ["issue_185", "coV", "control"], ["issue_185", "coV", "Ewe"], ["issue_185", "coV", "I"], ["issue_185", "coV", "dQ"], ["issue_185", "coV", "dq"], ["issue_185", "coV", "(Q-Qo)"], ["issue_185", "coV", "I Range"], ["issue_185", "coV", "Q charge or discharge"], ["issue_185", "coV", "Energy we charge"], ["issue_185", "coV", "Capacitance charge"], ["issue_185", "coV", "step time"], ["issue_149", "CP", "time"], ["issue_149", "CP", "Ewe"], ["issue_149", "CP", "I"], ["issue_149", "CP", "dQ"], ["issue_149", "CP", "(Q-Qo)"], ["issue_149", "CP", "half cycle"], ["issue_149", "CP", "Q charge or discharge"], ["cp.issue_61.mpr", "CP", "Ns"], ["cp.issue_61.mpr", "CP", "time"], ["cp.issue_61.mpr", "CP", "control"], ["cp.issue_61.mpr", "CP", "Ewe"], ["cp.issue_61.mpr", "CP", "I"], ["cp.issue_61.mpr", "CP", "dQ"], ["cp.issue_61.mpr", "CP", "(Q-Qo)"], ["cp.issue_61.mpr", "CP", "Q charge or discharge"], ["cp.issue_61.mpr", "CP", "Energy we charge"], ["cp.issue_61.mpr", "CP", "Capacitance charge"], ["cp.mpr", "CP", "time"], ["cp.mpr", "CP", "Ewe"], ["cp.mpr", "CP", "I"], ["cp.mpr", "CP", "dQ"], ["cp.mpr", "CP", "(Q-Qo)"], ["cp.mpr", "CP", "Q charge or discharge"], ["cp.mpr", "CP", "Ece"], ["issue_149", "CV", "time"], ["issue_149", "CV", "control"], ["issue_149", "CV", "Ewe"], ["issue_149", "CV", "I"], ["issue_149", "CV", "cycle number"], ["issue_149", "CV", "(Q-Qo)"], ["issue_149", "CV", "I Range"], ["issue_149", "CV", "Rcmp"], ["issue_149", "CV", "step time"], ["cv.issue_217.mpr", "CV", "time"], ["cv.issue_217.mpr", "CV", "control"], ["cv.issue_217.mpr", "CV", "Ewe"], ["cv.issue_217.mpr", "CV", "I"], ["cv.issue_217.mpr", "CV", "cycle number"], ["cv.issue_217.mpr", "CV", "(Q-Qo)"], ["cv.issue_217.mpr", "CV", "I Range"], ["cv.issue_217.mpr", "CV", "Ece"], ["cv.issue_217.mpr", "CV", "Rcmp"], ["cv.mpr", "CV", "time"], ["cv.mpr", "CV", "control"], ["cv.mpr", "CV", "Ewe"], ["cv.mpr", "CV", "I"], ["cv.mpr", "CV", "cycle number"], ["cv.mpr", "CV", "(Q-Qo)"], ["cva.issue_135.mpr", "CVA", "time"], ["cva.issue_135.mpr", "CVA", "control"], ["cva.issue_135.mpr", "CVA", "Ewe"], ["cva.issue_135.mpr", "CVA", "I"], ["cva.issue_135.mpr", "CVA", "cycle number"], ["cva.issue_135.mpr", "CVA", "(Q-Qo)"], ["cva.issue_202.mpr", "CVA", "time"], ["cva.issue_202.mpr", "CVA", "control"], ["cva.issue_202.mpr", "CVA", "Ewe"], ["cva.issue_202.mpr", "CVA", "I"], ["cva.issue_202.mpr", "CVA", "(Q-Qo)"], ["issue_149", "GCPL", "Ns"], ["issue_149", "GCPL", "time"], ["issue_149", "GCPL", "dq"], ["issue_149", "GCPL", "(Q-Qo)"], ["issue_149", "GCPL", "control"], ["issue_149", "GCPL", "Ewe"], ["issue_149", "GCPL", "I Range"], ["issue_149", "GCPL", "Q charge or discharge"], ["issue_149", "GCPL", "half cycle"], ["issue_149", "GCPL", "Pwe"], ["gcpl.issue_175.mpr", "GCPL", "Ns"], ["gcpl.issue_175.mpr", "GCPL", "time"], ["gcpl.issue_175.mpr", "GCPL", "dq"], ["gcpl.issue_175.mpr", "GCPL", "(Q-Qo)"], ["gcpl.issue_175.mpr", "GCPL", "control"], ["gcpl.issue_175.mpr", "GCPL", "Ewe"], ["gcpl.issue_175.mpr", "GCPL", "I Range"], ["gcpl.issue_175.mpr", "GCPL", "Q charge or discharge"], ["gcpl.issue_175.mpr", "GCPL", "half cycle"], ["gcpl.issue_211.mpr", "GCPL", "Ns"], ["gcpl.issue_211.mpr", "GCPL", "time"], ["gcpl.issue_211.mpr", "GCPL", "dq"], ["gcpl.issue_211.mpr", "GCPL", "(Q-Qo)"], ["gcpl.issue_211.mpr", "GCPL", "control"], ["gcpl.issue_211.mpr", "GCPL", "Ewe"], ["gcpl.issue_211.mpr", "GCPL", "Ece"], ["gcpl.issue_211.mpr", "GCPL", "Q charge or discharge"], ["gcpl.issue_211.mpr", "GCPL", "half cycle"], ["gcpl.issue_211.mpr", "GCPL", "Energy we charge"], ["gcpl.issue_211.mpr", "GCPL", "Energy we discharge"], ["issue_226", "GCPL", "Ns"], ["issue_226", "GCPL", "time"], ["issue_226", "GCPL", "dq"], ["issue_226", "GCPL", "(Q-Qo)"], ["issue_226", "GCPL", "control"], ["issue_226", "GCPL", "Ewe"], ["issue_226", "GCPL", "Ece"], ["issue_226", "GCPL", "Q charge or discharge"], ["issue_226", "GCPL", "half cycle"], ["issue_226", "GCPL", "Ns"], ["issue_226", "GCPL", "time"], ["issue_226", "GCPL", "dq"], ["issue_226", "GCPL", "(Q-Qo)"], ["issue_226", "GCPL", "control"], ["issue_226", "GCPL", "Ewe"], ["issue_226", "GCPL", "Ece"], ["issue_226", "GCPL", "Q charge or discharge"], ["issue_226", "GCPL", "half cycle"], ["gcpl.issue_228.mpr", "GCPL", "Ns"], ["gcpl.issue_228.mpr", "GCPL", "time"], ["gcpl.issue_228.mpr", "GCPL", "dq"], ["gcpl.issue_228.mpr", "GCPL", "(Q-Qo)"], ["gcpl.issue_228.mpr", "GCPL", "control"], ["gcpl.issue_228.mpr", "GCPL", "Ewe"], ["gcpl.issue_228.mpr", "GCPL", "I Range"], ["gcpl.issue_228.mpr", "GCPL", "Q charge or discharge"], ["gcpl.issue_228.mpr", "GCPL", "half cycle"], ["gcpl.issue_228.mpr", "GCPL", "Pwe"], ["gcpl.issue_230.mpr", "GCPL", "Ns"], ["gcpl.issue_230.mpr", "GCPL", "time"], ["gcpl.issue_230.mpr", "GCPL", "dq"], ["gcpl.issue_230.mpr", "GCPL", "(Q-Qo)"], ["gcpl.issue_230.mpr", "GCPL", "control"], ["gcpl.issue_230.mpr", "GCPL", "Ewe"], ["gcpl.issue_230.mpr", "GCPL", "Ece"], ["gcpl.issue_230.mpr", "GCPL", "I Range"], ["gcpl.issue_230.mpr", "GCPL", "Q charge or discharge"], ["gcpl.issue_230.mpr", "GCPL", "half cycle"], ["gcpl.issue_230.mpr", "GCPL", "Analog IN 1"], ["gcpl.issue_230.mpr", "GCPL", "Energy we charge"], ["gcpl.issue_230.mpr", "GCPL", "Energy we discharge"], ["gcpl.issue_230.mpr", "GCPL", "Energy ce charge"], ["gcpl.issue_230.mpr", "GCPL", "Energy ce discharge"], ["gcpl.issue_230.mpr", "GCPL", "Capacitance charge"], ["gcpl.issue_230.mpr", "GCPL", "Capacitance discharge"], ["gcpl.issue_230.mpr", "GCPL", "step time"], ["gcpl.mpr", "GCPL", "Ns"], ["gcpl.mpr", "GCPL", "time"], ["gcpl.mpr", "GCPL", "dq"], ["gcpl.mpr", "GCPL", "(Q-Qo)"], ["gcpl.mpr", "GCPL", "control"], ["gcpl.mpr", "GCPL", "Ewe"], ["gcpl.mpr", "GCPL", "Q charge or discharge"], ["gcpl.mpr", "GCPL", "half cycle"], ["gcpl.mpr", "GCPL", "Energy we charge"], ["gcpl.mpr", "GCPL", "Energy we discharge"], ["gcpl.mpr", "GCPL", "Capacitance charge"], ["gcpl.mpr", "GCPL", "Capacitance discharge"], ["pr_182", "GCPL", "Ns"], ["pr_182", "GCPL", "time"], ["pr_182", "GCPL", "dq"], ["pr_182", "GCPL", "control"], ["pr_182", "GCPL", "Ewe"], ["pr_182", "GCPL", "I Range"], ["pr_182", "GCPL", "Ece"], ["pr_182", "GCPL", "Pwe"], ["pr_182", "GCPL", "Q charge or discharge"], ["pr_182", "GCPL", "half cycle"], ["pr_182", "GCPL", "(Q-Qo)"], ["pr_182", "GCPL", "Energy we charge"], ["pr_182", "GCPL", "Energy we discharge"], ["pr_182", "GCPL", "Capacitance charge"], ["pr_182", "GCPL", "Capacitance discharge"], ["pr_182", "GCPL", "Ns"], ["pr_182", "GCPL", "time"], ["pr_182", "GCPL", "dq"], ["pr_182", "GCPL", "control"], ["pr_182", "GCPL", "Ewe"], ["pr_182", "GCPL", "I Range"], ["pr_182", "GCPL", "Ece"], ["pr_182", "GCPL", "Pwe"], ["pr_182", "GCPL", "Q charge or discharge"], ["pr_182", "GCPL", "half cycle"], ["pr_182", "GCPL", "Energy we charge"], ["pr_182", "GCPL", "Energy we discharge"], ["pr_182", "GCPL", "Capacitance charge"], ["pr_182", "GCPL", "Capacitance discharge"], ["pr_182", "GCPL", "(Q-Qo)"], ["issue_149", "GEIS", "freq"], ["issue_149", "GEIS", "Re(Z)"], ["issue_149", "GEIS", "-Im(Z)"], ["issue_149", "GEIS", "|Z|"], ["issue_149", "GEIS", "Phase(Z)"], ["issue_149", "GEIS", "time"], ["issue_149", "GEIS", "Ewe"], ["issue_149", "GEIS", "I"], ["issue_149", "GEIS", "Cs"], ["issue_149", "GEIS", "Cp"], ["issue_149", "GEIS", "cycle number"], ["issue_149", "GEIS", "|Ewe|"], ["issue_149", "GEIS", "|I|"], ["issue_149", "GEIS", "(Q-Qo)"], ["issue_149", "GEIS", "Pwe"], ["issue_149", "GEIS", "THD Ewe"], ["issue_149", "GEIS", "NSD Ewe"], ["issue_149", "GEIS", "NSR Ewe"], ["issue_149", "GEIS", "|Ewe h2|"], ["issue_149", "GEIS", "|Ewe h3|"], ["issue_149", "GEIS", "|Ewe h4|"], ["issue_149", "GEIS", "|Ewe h5|"], ["issue_149", "GEIS", "|Ewe h6|"], ["issue_149", "GEIS", "|Ewe h7|"], ["issue_149", "GEIS", "THD I"], ["issue_149", "GEIS", "NSD I"], ["issue_149", "GEIS", "NSR I"], ["issue_149", "GEIS", "|I h2|"], ["issue_149", "GEIS", "|I h3|"], ["issue_149", "GEIS", "|I h4|"], ["issue_149", "GEIS", "|I h5|"], ["issue_149", "GEIS", "|I h6|"], ["issue_149", "GEIS", "|I h7|"], ["geis.mpr", "GEIS", "freq"], ["geis.mpr", "GEIS", "Re(Z)"], ["geis.mpr", "GEIS", "-Im(Z)"], ["geis.mpr", "GEIS", "|Z|"], ["geis.mpr", "GEIS", "Phase(Z)"], ["geis.mpr", "GEIS", "time"], ["geis.mpr", "GEIS", "Ewe"], ["geis.mpr", "GEIS", "I"], ["geis.mpr", "GEIS", "Cs"], ["geis.mpr", "GEIS", "Cp"], ["geis.mpr", "GEIS", "cycle number"], ["geis.mpr", "GEIS", "|Ewe|"], ["geis.mpr", "GEIS", "|I|"], ["geis.mpr", "GEIS", "(Q-Qo)"], ["geis.mpr", "GEIS", "Ece"], ["geis.mpr", "GEIS", "|Ece|"], ["geis.mpr", "GEIS", "Phase(Zce)"], ["geis.mpr", "GEIS", "|Zce|"], ["geis.mpr", "GEIS", "Re(Zce)"], ["geis.mpr", "GEIS", "-Im(Zce)"], ["geis.mpr", "GEIS", "Phase(Zwe-ce)"], ["geis.mpr", "GEIS", "|Zwe-ce|"], ["geis.mpr", "GEIS", "Re(Zwe-ce)"], ["geis.mpr", "GEIS", "-Im(Zwe-ce)"], ["lsv.issue_195.mpr", "LSV", "time"], ["lsv.issue_195.mpr", "LSV", "control"], ["lsv.issue_195.mpr", "LSV", "Ewe"], ["lsv.issue_195.mpr", "LSV", "I"], ["lsv.issue_195.mpr", "LSV", "(Q-Qo)"], ["lsv.issue_195.mpr", "LSV", "I Range"], ["lsv.issue_195.mpr", "LSV", "Ece"], ["lsv.issue_195.mpr", "LSV", "Analog IN 1"], ["lsv.issue_195.mpr", "LSV", "Analog IN 2"], ["lsv.issue_195.mpr", "LSV", "Pwe"], ["lsv.mpr", "LSV", "time"], ["lsv.mpr", "LSV", "control"], ["lsv.mpr", "LSV", "Ewe"], ["lsv.mpr", "LSV", "I"], ["lsv.mpr", "LSV", "(Q-Qo)"], ["lsv.mpr", "LSV", "Ece"], ["issue_149", "MB", "Ns"], ["issue_149", "MB", "I Range"], ["issue_149", "MB", "time"], ["issue_149", "MB", "control"], ["issue_149", "MB", "Ewe"], ["issue_149", "MB", "I"], ["issue_149", "MB", "dq"], ["issue_149", "MB", "(Q-Qo)"], ["issue_149", "MB", "|Energy|"], ["issue_149", "MB", "freq"], ["issue_149", "MB", "|Z|"], ["issue_149", "MB", "Phase(Z)"], ["issue_149", "MB", "Q charge or discharge"], ["issue_149", "MB", "Pwe"], ["issue_149", "MB", "THD Ewe"], ["issue_149", "MB", "NSD Ewe"], ["issue_149", "MB", "NSR Ewe"], ["issue_149", "MB", "|Ewe h2|"], ["issue_149", "MB", "|Ewe h3|"], ["issue_149", "MB", "|Ewe h4|"], ["issue_149", "MB", "|Ewe h5|"], ["issue_149", "MB", "|Ewe h6|"], ["issue_149", "MB", "|Ewe h7|"], ["issue_149", "MB", "THD I"], ["issue_149", "MB", "NSD I"], ["issue_149", "MB", "NSR I"], ["issue_149", "MB", "|I h2|"], ["issue_149", "MB", "|I h3|"], ["issue_149", "MB", "|I h4|"], ["issue_149", "MB", "|I h5|"], ["issue_149", "MB", "|I h6|"], ["issue_149", "MB", "|I h7|"], ["issue_149", "MB", "z cycle"], ["mb.issue_218.mpr", "MB", "Ns"], ["mb.issue_218.mpr", "MB", "I Range"], ["mb.issue_218.mpr", "MB", "time"], ["mb.issue_218.mpr", "MB", "control"], ["mb.issue_218.mpr", "MB", "Ewe"], ["mb.issue_218.mpr", "MB", "I"], ["mb.issue_218.mpr", "MB", "dq"], ["mb.issue_218.mpr", "MB", "(Q-Qo)"], ["mb.issue_218.mpr", "MB", "|Energy|"], ["mb.issue_218.mpr", "MB", "Q charge or discharge"], ["mb.issue_218.mpr", "MB", "Ece"], ["mb.issue_218.mpr", "MB", "Analog IN 1"], ["mb.issue_218.mpr", "MB", "Analog IN 2"], ["mb.issue_218.mpr", "MB", "Pwe"], ["mb.issue_223.mpr", "MB", "Ns"], ["mb.issue_223.mpr", "MB", "I Range"], ["mb.issue_223.mpr", "MB", "time"], ["mb.issue_223.mpr", "MB", "control"], ["mb.issue_223.mpr", "MB", "Ewe"], ["mb.issue_223.mpr", "MB", "I"], ["mb.issue_223.mpr", "MB", "dq"], ["mb.issue_223.mpr", "MB", "(Q-Qo)"], ["mb.issue_223.mpr", "MB", "freq"], ["mb.issue_223.mpr", "MB", "|Z|"], ["mb.issue_223.mpr", "MB", "Phase(Z)"], ["mb.issue_223.mpr", "MB", "Q charge or discharge"], ["mb.issue_223.mpr", "MB", "Energy we"], ["mb.issue_223.mpr", "MB", "z cycle"], ["mb.issue_95.mpr", "MB", "Ns"], ["mb.issue_95.mpr", "MB", "I Range"], ["mb.issue_95.mpr", "MB", "time"], ["mb.issue_95.mpr", "MB", "control"], ["mb.issue_95.mpr", "MB", "Ewe"], ["mb.issue_95.mpr", "MB", "I"], ["mb.issue_95.mpr", "MB", "dq"], ["mb.issue_95.mpr", "MB", "(Q-Qo)"], ["mb.issue_95.mpr", "MB", "|Energy|"], ["mb.issue_95.mpr", "MB", "Q charge or discharge"], ["mb.issue_95.mpr", "MB", "half cycle"], ["mb.issue_95.mpr", "MB", "Energy we charge"], ["mb.issue_95.mpr", "MB", "Energy we discharge"], ["mb.mpr", "MB", "Ns"], ["mb.mpr", "MB", "I Range"], ["mb.mpr", "MB", "time"], ["mb.mpr", "MB", "control"], ["mb.mpr", "MB", "Ewe"], ["mb.mpr", "MB", "I"], ["mb.mpr", "MB", "dq"], ["mb.mpr", "MB", "(Q-Qo)"], ["mb.mpr", "MB", "|Energy|"], ["mb.mpr", "MB", "freq"], ["mb.mpr", "MB", "|Z|"], ["mb.mpr", "MB", "Phase(Z)"], ["mb.mpr", "MB", "Q charge or discharge"], ["mb.mpr", "MB", "half cycle"], ["mb.mpr", "MB", "z cycle"], ["mb.mpr", "MB", "Energy we charge"], ["mb.mpr", "MB", "Energy we discharge"], ["mp.issue_183.mpr", "MP", "Ns"], ["mp.issue_183.mpr", "MP", "time"], ["mp.issue_183.mpr", "MP", "control"], ["mp.issue_183.mpr", "MP", "Ewe"], ["mp.issue_183.mpr", "MP", "I"], ["mp.issue_183.mpr", "MP", "dQ"], ["mp.issue_183.mpr", "MP", "I Range"], ["mp.issue_183.mpr", "MP", "Analog IN 1"], ["issue_149", "OCV", "time"], ["issue_149", "OCV", "Ewe"], ["ocv.mpr", "OCV", "time"], ["ocv.mpr", "OCV", "Ewe"], ["issue_149", "PEIS", "freq"], ["issue_149", "PEIS", "Re(Z)"], ["issue_149", "PEIS", "-Im(Z)"], ["issue_149", "PEIS", "|Z|"], ["issue_149", "PEIS", "Phase(Z)"], ["issue_149", "PEIS", "time"], ["issue_149", "PEIS", "Ewe"], ["issue_149", "PEIS", "I"], ["issue_149", "PEIS", "Cs"], ["issue_149", "PEIS", "Cp"], ["issue_149", "PEIS", "cycle number"], ["issue_149", "PEIS", "I Range"], ["issue_149", "PEIS", "|Ewe|"], ["issue_149", "PEIS", "|I|"], ["issue_149", "PEIS", "(Q-Qo)"], ["issue_149", "PEIS", "Pwe"], ["issue_149", "PEIS", "THD Ewe"], ["issue_149", "PEIS", "NSD Ewe"], ["issue_149", "PEIS", "NSR Ewe"], ["issue_149", "PEIS", "|Ewe h2|"], ["issue_149", "PEIS", "|Ewe h3|"], ["issue_149", "PEIS", "|Ewe h4|"], ["issue_149", "PEIS", "|Ewe h5|"], ["issue_149", "PEIS", "|Ewe h6|"], ["issue_149", "PEIS", "|Ewe h7|"], ["issue_149", "PEIS", "THD I"], ["issue_149", "PEIS", "NSD I"], ["issue_149", "PEIS", "NSR I"], ["issue_149", "PEIS", "|I h2|"], ["issue_149", "PEIS", "|I h3|"], ["issue_149", "PEIS", "|I h4|"], ["issue_149", "PEIS", "|I h5|"], ["issue_149", "PEIS", "|I h6|"], ["issue_149", "PEIS", "|I h7|"], ["issue_225", "PEIS", "freq"], ["issue_225", "PEIS", "Re(Z)"], ["issue_225", "PEIS", "-Im(Z)"], ["issue_225", "PEIS", "|Z|"], ["issue_225", "PEIS", "Phase(Z)"], ["issue_225", "PEIS", "time"], ["issue_225", "PEIS", "Ewe"], ["issue_225", "PEIS", "I"], ["issue_225", "PEIS", "Cs"], ["issue_225", "PEIS", "Cp"], ["issue_225", "PEIS", "I Range"], ["issue_225", "PEIS", "|Ewe|"], ["issue_225", "PEIS", "|I|"], ["issue_225", "PEIS", "(Q-Qo)"], ["issue_225", "PEIS", "Ece"], ["issue_225", "PEIS", "|Ece|"], ["issue_225", "PEIS", "Phase(Zce)"], ["issue_225", "PEIS", "|Zce|"], ["issue_225", "PEIS", "Re(Zce)"], ["issue_225", "PEIS", "-Im(Zce)"], ["issue_225", "PEIS", "Phase(Zwe-ce)"], ["issue_225", "PEIS", "|Zwe-ce|"], ["issue_225", "PEIS", "Re(Zwe-ce)"], ["issue_225", "PEIS", "-Im(Zwe-ce)"], ["issue_225", "PEIS", "freq"], ["issue_225", "PEIS", "Re(Z)"], ["issue_225", "PEIS", "-Im(Z)"], ["issue_225", "PEIS", "|Z|"], ["issue_225", "PEIS", "Phase(Z)"], ["issue_225", "PEIS", "time"], ["issue_225", "PEIS", "Ewe"], ["issue_225", "PEIS", "I"], ["issue_225", "PEIS", "Cs"], ["issue_225", "PEIS", "Cp"], ["issue_225", "PEIS", "I Range"], ["issue_225", "PEIS", "|Ewe|"], ["issue_225", "PEIS", "|I|"], ["issue_225", "PEIS", "(Q-Qo)"], ["issue_225", "PEIS", "freq"], ["issue_225", "PEIS", "Re(Z)"], ["issue_225", "PEIS", "-Im(Z)"], ["issue_225", "PEIS", "|Z|"], ["issue_225", "PEIS", "Phase(Z)"], ["issue_225", "PEIS", "time"], ["issue_225", "PEIS", "Ewe"], ["issue_225", "PEIS", "I"], ["issue_225", "PEIS", "Cs"], ["issue_225", "PEIS", "Cp"], ["issue_225", "PEIS", "I Range"], ["issue_225", "PEIS", "|Ewe|"], ["issue_225", "PEIS", "|I|"], ["issue_225", "PEIS", "(Q-Qo)"], ["issue_225", "PEIS", "Ece"], ["issue_225", "PEIS", "|Ece|"], ["issue_225", "PEIS", "Phase(Zce)"], ["issue_225", "PEIS", "|Zce|"], ["issue_225", "PEIS", "Re(Zce)"], ["issue_225", "PEIS", "-Im(Zce)"], ["issue_225", "PEIS", "Phase(Zwe-ce)"], ["issue_225", "PEIS", "|Zwe-ce|"], ["issue_225", "PEIS", "Re(Zwe-ce)"], ["issue_225", "PEIS", "-Im(Zwe-ce)"], ["peis.mpr", "PEIS", "freq"], ["peis.mpr", "PEIS", "Re(Z)"], ["peis.mpr", "PEIS", "-Im(Z)"], ["peis.mpr", "PEIS", "|Z|"], ["peis.mpr", "PEIS", "Phase(Z)"], ["peis.mpr", "PEIS", "time"], ["peis.mpr", "PEIS", "Ewe"], ["peis.mpr", "PEIS", "I"], ["peis.mpr", "PEIS", "Cs"], ["peis.mpr", "PEIS", "Cp"], ["peis.mpr", "PEIS", "|Ewe|"], ["peis.mpr", "PEIS", "|I|"], ["peis.mpr", "PEIS", "(Q-Qo)"], ["peis.mpr", "PEIS", "Ece"], ["peis.mpr", "PEIS", "|Ece|"], ["peis.mpr", "PEIS", "Phase(Zce)"], ["peis.mpr", "PEIS", "|Zce|"], ["peis.mpr", "PEIS", "Re(Zce)"], ["peis.mpr", "PEIS", "-Im(Zce)"], ["peis.mpr", "PEIS", "Phase(Zwe-ce)"], ["peis.mpr", "PEIS", "|Zwe-ce|"], ["peis.mpr", "PEIS", "Re(Zwe-ce)"], ["peis.mpr", "PEIS", "-Im(Zwe-ce)"], ["vsp_", "OCV", "time"], ["vsp_", "OCV", "Ewe"], ["vsp_", "OCV", "Analog IN 1"], ["vsp_", "OCV", "Analog IN 2"], ["vsp_", "OCV", "time"], ["vsp_", "OCV", "Ewe"], ["vsp_", "PEIS", "freq"], ["vsp_", "PEIS", "Re(Z)"], ["vsp_", "PEIS", "-Im(Z)"], ["vsp_", "PEIS", "|Z|"], ["vsp_", "PEIS", "Phase(Z)"], ["vsp_", "PEIS", "time"], ["vsp_", "PEIS", "Ewe"], ["vsp_", "PEIS", "I"], ["vsp_", "PEIS", "Cs"], ["vsp_", "PEIS", "Cp"], ["vsp_", "PEIS", "cycle number"], ["vsp_", "PEIS", "I Range"], ["vsp_", "PEIS", "|Ewe|"], ["vsp_", "PEIS", "|I|"], ["vsp_", "PEIS", "(Q-Qo)"], ["vsp_", "PEIS", "Analog IN 1"], ["vsp_", "PEIS", "Analog IN 2"]], "files": [["BCD", "bcd.issue_241.mpr", "bcd.issue_241.mpr", ["(Q-Qo)", "Ewe", "I", "I Range", "Q charge or discharge", "control", "dq", "half cycle", "time"]], [null, "bio_logic", "bio_logic2.mpr", ["Ewe", "Pwe", "control", "dq", "time"]], [null, "bio_logic", "bio_logic3.mpr", ["Ewe", "Ns", "Pwe", "control", "dq", "time"]], [null, "bio_logic", "bio_logic5.mpr", ["Ewe", "I", "Pwe", "control", "dQ", "time"]], [null, "bio_logic", "bio_logic6.mpr", ["(Q-Qo)", "Ewe", "I", "control", "cycle number", "time"]], ["CA", "ca.issue_134.mpr", "ca.issue_134.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Ewe", "I", "Ns", "Q charge or discharge", "control", "dQ", "half cycle", "time"]], ["CA", "issue_149", "ca.issue_149.mpr", ["(Q-Qo)", "Ewe", "I", "I Range", "Ns", "Pwe", "Q charge or discharge", "control", "dQ", "half cycle", "time"]], ["CA", "ca.mpr", "ca.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Energy we charge", "Energy we discharge", "Ewe", "I", "I Range", "Ns", "Q charge or discharge", "control", "dQ", "half cycle", "time"]], ["coC", "issue_185", "coc.issue_185.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Energy we charge", "Energy we discharge", "Ewe", "I", "I Range", "Ns", "Q charge or discharge", "control", "dQ", "dq", "half cycle", "step time", "time"]], ["coV", "issue_185", "cov.issue_185.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Energy we charge", "Energy we discharge", "Ewe", "I", "I Range", "Ns", "Q charge or discharge", "control", "dQ", "dq", "half cycle", "step time", "time"]], ["CP", "issue_149", "cp.issue_149.mpr", ["(Q-Qo)", "Ewe", "I", "I Range", "Ns", "Q charge or discharge", "control", "dQ", "half cycle", "time"]], ["CP", "cp.issue_61.mpr", "cp.issue_61.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Energy we charge", "Energy we discharge", "Ewe", "I", "I Range", "Ns", "Q charge or discharge", "control", "dQ", "half cycle", "time"]], ["CP", "cp.mpr", "cp.mpr", ["(Q-Qo)", "Ece", "Ewe", "I", "I Range", "Ns", "Q charge or discharge", "control", "dQ", "half cycle", "time"]], ["CV", "issue_149", "cv.issue_149.mpr", ["(Q-Qo)", "Ewe", "I", "I Range", "Rcmp", "control", "cycle number", "step time", "time"]], ["CV", "cv.issue_217.mpr", "cv.issue_217.mpr", ["(Q-Qo)", "Ece", "Ewe", "I", "I Range", "Rcmp", "control", "cycle number", "time"]], ["CV", "cv.mpr", "cv.mpr", ["(Q-Qo)", "Ewe", "I", "control", "cycle number", "time"]], ["CVA", "cva.issue_135.mpr", "cva.issue_135.mpr", ["(Q-Qo)", "Ewe", "I", "control", "cycle number", "time"]], ["CVA", "cva.issue_202.mpr", "cva.issue_202.mpr", ["(Q-Qo)", "Ewe", "I", "I Range", "Ns", "Rcmp", "control", "cycle number", "time"]], ["GCPL", "issue_149", "gcpl.issue_149.mpr", ["(Q-Qo)", "Ewe", "I Range", "Ns", "Pwe", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GCPL", "gcpl.issue_175.mpr", "gcpl.issue_175.mpr", ["(Q-Qo)", "Ewe", "I Range", "Ns", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GCPL", "gcpl.issue_211.mpr", "gcpl.issue_211.mpr", ["(Q-Qo)", "Ece", "Energy we charge", "Energy we discharge", "Ewe", "I Range", "Ns", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GCPL", "issue_226", "gcpl.issue_226.CxN.mpr", ["(Q-Qo)", "Ece", "Ewe", "I Range", "Ns", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GCPL", "issue_226", "gcpl.issue_226.I.mpr", ["(Q-Qo)", "Ece", "Ewe", "I Range", "Ns", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GCPL", "gcpl.issue_228.mpr", "gcpl.issue_228.mpr", ["(Q-Qo)", "Ewe", "I Range", "Ns", "Pwe", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GCPL", "gcpl.issue_230.mpr", "gcpl.issue_230.mpr", ["(Q-Qo)", "Analog IN 1", "Capacitance charge", "Capacitance discharge", "Ece", "Energy ce charge", "Energy ce discharge", "Energy we charge", "Energy we discharge", "Ewe", "I Range", "Ns", "Q charge or discharge", "control", "dq", "half cycle", "step time", "time"]], ["GCPL", "gcpl.mpr", "gcpl.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Energy we charge", "Energy we discharge", "Ewe", "Ns", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GCPL", "pr_182", "gcpl.pr_182.1.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Ece", "Energy we charge", "Energy we discharge", "Ewe", "I Range", "Ns", "Pwe", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GCPL", "pr_182", "gcpl.pr_182.2.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Ece", "Energy we charge", "Energy we discharge", "Ewe", "I Range", "Ns", "Pwe", "Q charge or discharge", "control", "dq", "half cycle", "time"]], ["GEIS", "issue_149", "geis.issue_149.mpr", ["(Q-Qo)", "-Im(Z)", "Cp", "Cs", "Ewe", "I", "I Range", "NSD Ewe", "NSD I", "NSR Ewe", "NSR I", "Ns", "Phase(Z)", "Pwe", "Re(Z)", "THD Ewe", "THD I", "cycle number", "freq", "time", "|Ewe h2|", "|Ewe h3|", "|Ewe h4|", "|Ewe h5|", "|Ewe h6|", "|Ewe h7|", "|Ewe|", "|I h2|", "|I h3|", "|I h4|", "|I h5|", "|I h6|", "|I h7|", "|I|", "|Z|"]], ["GEIS", "geis.mpr", "geis.mpr", ["(Q-Qo)", "-Im(Z)", "-Im(Zce)", "-Im(Zwe-ce)", "Cp", "Cs", "Ece", "Ewe", "I", "I Range", "Phase(Z)", "Phase(Zce)", "Phase(Zwe-ce)", "Re(Z)", "Re(Zce)", "Re(Zwe-ce)", "cycle number", "freq", "time", "|Ece|", "|Ewe|", "|I|", "|Zce|", "|Zwe-ce|", "|Z|"]], ["LSV", "lsv.issue_195.mpr", "lsv.issue_195.mpr", ["(Q-Qo)", "Analog IN 1", "Analog IN 2", "Ece", "Ewe", "I", "I Range", "Pwe", "control", "time"]], ["LSV", "lsv.mpr", "lsv.mpr", ["(Q-Qo)", "Ece", "Ewe", "I", "I Range", "control", "time"]], ["MB", "issue_149", "mb.issue_149.mpr", ["(Q-Qo)", "Ewe", "I", "I Range", "NSD Ewe", "NSD I", "NSR Ewe", "NSR I", "Ns", "Phase(Z)", "Pwe", "Q charge or discharge", "THD Ewe", "THD I", "control", "dq", "freq", "half cycle", "time", "z cycle", "|Energy|", "|Ewe h2|", "|Ewe h3|", "|Ewe h4|", "|Ewe h5|", "|Ewe h6|", "|Ewe h7|", "|I h2|", "|I h3|", "|I h4|", "|I h5|", "|I h6|", "|I h7|", "|Z|"]], ["MB", "mb.issue_218.mpr", "mb.issue_218.mpr", ["(Q-Qo)", "Analog IN 1", "Analog IN 2", "Ece", "Ewe", "I", "I Range", "Ns", "Pwe", "Q charge or discharge", "control", "dq", "half cycle", "time", "|Energy|"]], ["MB", "mb.issue_223.mpr", "mb.issue_223.mpr", ["(Q-Qo)", "Energy we", "Ewe", "I", "I Range", "Ns", "Phase(Z)", "Q charge or discharge", "control", "dq", "freq", "half cycle", "time", "z cycle", "|Z|"]], ["MB", "mb.issue_95.mpr", "mb.issue_95.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Energy we charge", "Energy we discharge", "Ewe", "I", "I Range", "Ns", "Q charge or discharge", "control", "dq", "half cycle", "time", "|Energy|"]], ["MB", "mb.mpr", "mb.mpr", ["(Q-Qo)", "Capacitance charge", "Capacitance discharge", "Energy we charge", "Energy we discharge", "Ewe", "I", "I Range", "Ns", "Phase(Z)", "Q charge or discharge", "control", "dq", "freq", "half cycle", "time", "z cycle", "|Energy|", "|Z|"]], ["MP", "mp.issue_183.mpr", "mp.issue_183.mpr", ["Analog IN 1", "Ewe", "I", "I Range", "Ns", "control", "dQ", "time"]], ["OCV", "issue_149", "ocv.issue_149.mpr", ["Ewe", "time"]], ["OCV", "ocv.mpr", "ocv.mpr", ["Ewe", "time"]], ["OCV", "vsp_", "vsp_ocv_with.mpr", ["Analog IN 1", "Analog IN 2", "Ewe", "time"]], ["OCV", "vsp_", "vsp_ocv_wo.mpr", ["Ewe", "time"]], ["PEIS", "issue_149", "peis.issue_149.mpr", ["(Q-Qo)", "-Im(Z)", "Cp", "Cs", "Ewe", "I", "I Range", "NSD Ewe", "NSD I", "NSR Ewe", "NSR I", "Ns", "Phase(Z)", "Pwe", "Re(Z)", "THD Ewe", "THD I", "cycle number", "freq", "time", "|Ewe h2|", "|Ewe h3|", "|Ewe h4|", "|Ewe h5|", "|Ewe h6|", "|Ewe h7|", "|Ewe|", "|I h2|", "|I h3|", "|I h4|", "|I h5|", "|I h6|", "|I h7|", "|I|", "|Z|"]], ["PEIS", "issue_225", "peis.issue_225.ewe_ece.mpr", ["(Q-Qo)", "-Im(Z)", "-Im(Zce)", "-Im(Zwe-ce)", "Cp", "Cs", "Ece", "Ewe", "I", "I Range", "Ns", "Phase(Z)", "Phase(Zce)", "Phase(Zwe-ce)", "Re(Z)", "Re(Zce)", "Re(Zwe-ce)", "cycle number", "freq", "time", "|Ece|", "|Ewe|", "|I|", "|Zce|", "|Zwe-ce|", "|Z|"]], ["PEIS", "issue_225", "peis.issue_225.no_ece.mpr", ["(Q-Qo)", "-Im(Z)", "Cp", "Cs", "Ewe", "I", "I Range", "Ns", "Phase(Z)", "Re(Z)", "cycle number", "freq", "time", "|Ewe|", "|I|", "|Z|"]], ["PEIS", "issue_225", "peis.issue_225.with_ece.mpr", ["(Q-Qo)", "-Im(Z)", "-Im(Zce)", "-Im(Zwe-ce)", "Cp", "Cs", "Ece", "Ewe", "I", "I Range", "Ns", "Phase(Z)", "Phase(Zce)", "Phase(Zwe-ce)", "Re(Z)", "Re(Zce)", "Re(Zwe-ce)", "cycle number", "freq", "time", "|Ece|", "|Ewe|", "|I|", "|Zce|", "|Zwe-ce|", "|Z|"]], ["PEIS", "peis.mpr", "peis.mpr", ["(Q-Qo)", "-Im(Z)", "-Im(Zce)", "-Im(Zwe-ce)", "Cp", "Cs", "Ece", "Ewe", "I", "I Range", "Phase(Z)", "Phase(Zce)", "Phase(Zwe-ce)", "Re(Z)", "Re(Zce)", "Re(Zwe-ce)", "cycle number", "freq", "time", "|Ece|", "|Ewe|", "|I|", "|Zce|", "|Zwe-ce|", "|Z|"]], ["PEIS", "vsp_", "vsp_peis_with.mpr", ["(Q-Qo)", "-Im(Z)", "Analog IN 1", "Analog IN 2", "Cp", "Cs", "Ewe", "I", "I Range", "Ns", "Phase(Z)", "Re(Z)", "cycle number", "freq", "time", "|Ewe|", "|I|", "|Z|"]]]}

rosetta_eclab/debug.py

@@ -0,0 +1,85 @@
+"""Show how the library scores pool columns of one name (development aid).
+
+  python -m namer.debug "Re(Z)" [--n 4]
+"""
+
+from __future__ import annotations
+
+import argparse
+import sys
+import warnings
+
+import numpy as np
+
+from spike2 import corpus, features, tasks, vocab
+
+from .engine import Context, Known, fit
+from .evaluate import test_keys
+from .library import LIBRARY
+
+
+def main() -> int:
+    warnings.filterwarnings("ignore")
+    sys.stdout.reconfigure(encoding="utf-8")
+    ap = argparse.ArgumentParser()
+    ap.add_argument("name")
+    ap.add_argument("--n", type=int, default=4)
+    ap.add_argument("--fails", action="store_true", help="only show columns the pipeline gets wrong")
+    ap.add_argument("--probe", help="python expression over c (Context) to fit against the target, e.g. 'c.col(\"I\")'")
+    a = ap.parse_args()
+    excluded = test_keys()
+    shown = 0
+    for p in corpus.corpus_files():
+        try:
+            fd = tasks.file_data(p.name)
+        except Exception:
+            continue
+        if fd.n_points < tasks.MIN_ROWS:
+            continue
+        cols = tasks.usable_columns(fd)
+        for c in cols:
+            if vocab.canonical(c.name) != a.name or (p.name, c.position) in excluded or features.is_constant(c.values):
+                continue
+            others = [o for o in cols if o is not c]
+            if any(features.identical(c.values, o.values) for o in others):
+                continue  # duplicates are not part of the pool
+            if a.fails:
+                from .evaluate import answer
+                ans = answer(c.values, c.dtype, others, fd.technique, vocab.names(), exclude_group=corpus.source_group(p.name))
+                if ans["verdict"] == "NAME" and ans["name"] == a.name:
+                    continue
+                print(f"\n>> pipeline answer: {ans['verdict']} {ans.get('name')} | {ans.get('evidence', '')[:160]}")
+            known = {}
+            for o in others:
+                known.setdefault(vocab.canonical(o.name), Known(vocab.canonical(o.name), o.unit, np.asarray(o.values)))
+            ctx = Context(fd.technique, known, np.asarray(c.values), c.dtype)
+            y = np.asarray(c.values, dtype="f8")
+            print(f"\n== {p.name} ({fd.technique}) {c.name} [{c.unit}] {c.dtype}: min {y.min():.4g} max {y.max():.4g} "
+                  f"distinct {np.unique(y).size} first {y[:6].round(5).tolist()}")
+            print("   known:", ", ".join(f"{k} [{v.unit}]" for k, v in known.items()))
+            ranking = []
+            for cand, spec in LIBRARY.items():
+                if cand in known:
+                    continue
+                ev = spec.evaluate(ctx)
+                if ev:
+                    ranking.append((ev.score, cand, ev.detail))
+            ranking.sort(reverse=True)
+            for s, cand, d in ranking[:5]:
+                print(f"   {s:.3f} {cand}: {d}")
+            own = LIBRARY.get(a.name)
+            if own:
+                ev = own.evaluate(ctx)
+                print(f"   OWN: {ev.score if ev else None} {ev.detail if ev else 'no relation testable'}")
+            if a.probe:
+                with np.errstate(all="ignore"):
+                    f = fit(y, eval(a.probe, {"np": np, "c": ctx, **vars(sys.modules[f'{__package__}.library'])}))
+                print(f"   PROBE {a.probe}: {f}")
+            shown += 1
+            if shown >= a.n:
+                return 0
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())

rosetta_eclab/engine.py

@@ -0,0 +1,203 @@
+"""Standalone column namer: no language model at run time.
+
+For an unnamed column TARGET and the file's named columns, every candidate
+quantity in the library (namer/library.py) is scored by code:
+
+  1. relation checks: the candidate's defining relation to other columns (e.g.
+     dq = I*dt/3600) is computed from the known columns and fitted to TARGET;
+     the score uses r2 and whether the fitted scale matches the expected one
+     (unit conversions allowed), so dq, (Q-Qo) and Q charge/discharge separate.
+  2. shape checks: properties that need no other column (monotonic clock,
+     integer counter stepping by 1, log-spaced frequency, small set of codes).
+  3. abstention: if no candidate is supported well enough, the answer is
+     ABSTAIN with the best candidates listed as hints.
+
+Every answer carries its evidence (the relation, r2, fitted scale), so a
+maintainer can check it before adding the column to a parser.
+"""
+
+from __future__ import annotations
+
+from dataclasses import dataclass, field
+
+import numpy as np
+
+
+@dataclass
+class Known:
+    name: str  # canonical name (namer.library uses canonical names)
+    unit: str | None
+    values: np.ndarray
+    dtype: str = ""
+
+
+@dataclass
+class Context:
+    technique: str | None
+    known: dict[str, Known]  # canonical name -> column
+    target: np.ndarray
+    target_dtype: str
+
+    def col(self, *names: str) -> np.ndarray | None:
+        for n in names:
+            if n in self.known:
+                return np.asarray(self.known[n].values, dtype="f8")
+        return None
+
+    def unit(self, *names: str) -> str | None:
+        for n in names:
+            if n in self.known:
+                return self.known[n].unit
+        return None
+
+
+@dataclass
+class Evidence:
+    candidate: str
+    score: float  # 0..1
+    kind: str  # "relation" | "shape" | "prior"
+    detail: str
+    extras: dict = field(default_factory=dict)
+
+
+def fit(target: np.ndarray, pred: np.ndarray, robust: bool = True) -> tuple[float, float, float] | None:
+    """Least squares target ~ a*pred + b; returns (r2, a, b) or None if not testable."""
+    y = np.asarray(target, dtype="f8")
+    x = np.asarray(pred, dtype="f8")
+    m = np.isfinite(y) & np.isfinite(x)
+    if m.sum() < 3:
+        return None
+    y, x = y[m], x[m]
+    if np.ptp(y) == 0 or np.ptp(x) == 0:
+        return None
+    a, b = np.polyfit(x, y, 1)
+    res = y - (a * x + b)
+    ss = float(((y - y.mean()) ** 2).sum())
+    r2 = 1.0 - float((res ** 2).sum()) / ss
+    # Robust variant: real records have single glitch rows at step transitions. Refit without the worst
+    # 5% of rows (at least one, only for n >= 30 and a relation that already roughly holds).
+    n = y.size
+    if robust and n >= 30 and r2 < 0.999:
+        k = max(1, int(np.ceil(0.05 * n)))
+        a2, b2, r2t = a, b, r2
+        lev = np.argsort(np.abs(x - np.median(x)))[: n - k]  # start without the k highest-leverage rows
+        if np.ptp(x[lev]) > 0:
+            a2, b2 = np.polyfit(x[lev], y[lev], 1)
+        for _ in range(3):  # then trim by residual against the refitted line
+            keep = np.argsort(np.abs(y - (a2 * x + b2)))[: n - k]
+            yk, xk = y[keep], x[keep]
+            if np.ptp(yk) == 0 or np.ptp(xk) == 0:
+                break
+            a2, b2 = np.polyfit(xk, yk, 1)
+            ss2 = float(((yk - yk.mean()) ** 2).sum())
+            r2t = 1.0 - float(((yk - (a2 * xk + b2)) ** 2).sum()) / ss2
+        if r2t > r2:
+            return (r2t, float(a2), float(b2))
+    return (r2, float(a), float(b))
+
+
+def scale_match(a: float, expected: list[float], tol: float = 0.03) -> float | None:
+    """Relative closeness of the fitted scale to any expected scale (None if no expectation)."""
+    if not expected:
+        return None
+    best = min(abs(a / e - 1.0) for e in expected if e)
+    return 1.0 if best <= tol else max(0.0, 1.0 - (best - tol) / 0.5)
+
+
+CE_EIS = ("|Ece|", "|Zce|", "Re(Zce)", "-Im(Zce)", "Phase(Zce)", "|Zwe-ce|", "Re(Zwe-ce)", "-Im(Zwe-ce)",
+          "Phase(Zwe-ce)", "THD Ece", "NSD Ece", "NSR Ece")
+
+
+def needs_ce_channel(name: str) -> bool:
+    return name in CE_EIS or name.startswith("|Ece h")
+
+
+def has_ce_channel(present: set[str]) -> bool:
+    return any(n in present for n in ("Ece", "|Ece|", "|Zce|", "Re(Zce)", "-Im(Zce)", "Phase(Zce)"))
+
+
+def single_sibling(ctx: Context, vocabulary: list[str], present: set[str], cooccur=None, library=None) -> Evidence | None:
+    """Exactly one candidate is one token away from exactly one known column of the same storage and magnitude
+    (e.g. Analog IN 2 next to a known Analog IN 1)."""
+    from spike2.elim import one_token_apart
+
+    y = np.asarray(ctx.target, dtype="f8")
+    y = y[np.isfinite(y)]
+    if y.size < 3:
+        return None
+    hits = []
+    for cand in vocabulary:
+        if cand in present:
+            continue
+        sibs = [k for k in present if one_token_apart(cand, k)]
+        if len(sibs) != 1:
+            continue
+        if ctx.known[sibs[0]].dtype != ctx.target_dtype:
+            continue
+        together = cooccur(cand, sibs[0]) if cooccur is not None else 0.0
+        if cooccur is not None and together < 0.5:
+            continue  # not a pair that is normally recorded together
+        spec = library.get(cand) if library is not None else None
+        if spec is not None:
+            ev = spec.evaluate(ctx)
+            if ev is not None and ev.kind == "relation" and ev.extras.get("r2", 1.0) < 0.3:
+                continue  # the candidate's own defining relation contradicts it
+        s = np.asarray(ctx.known[sibs[0]].values, dtype="f8")
+        s = s[np.isfinite(s)]
+        if s.size == 0:
+            continue
+        mag_t, mag_s = np.abs(y).max() + 1e-12, np.abs(s).max() + 1e-12
+        if 0.1 <= mag_t / mag_s <= 10 or together >= 0.9:
+            hits.append((cand, sibs[0]))
+    if len(hits) != 1:
+        return None
+    cand, sib = hits[0]
+    return Evidence(cand, 0.62, "sibling", f"the only missing sibling of the known column {sib}, with similar magnitude")
+
+
+def name_column(ctx: Context, library, vocabulary: list[str], abstain_below: float = 0.6,
+                prior: dict[str, float] | None = None, cooccur=None) -> dict:
+    """Rank the vocabulary names that are not already present; return the answer with evidence."""
+    present = set(ctx.known)
+    evidences: list[Evidence] = []
+    for cand in vocabulary:
+        if cand in present:
+            continue
+        spec = library.get(cand)
+        if spec is None:
+            continue
+        ev = spec.evaluate(ctx)
+        if ev is not None:
+            if prior:  # how common the name is for this technique breaks near-ties between equal relations
+                ev.score = ev.score + 0.03 * prior.get(cand, 0.0)  # may exceed 1: only the order matters
+            evidences.append(ev)
+    sib = single_sibling(ctx, vocabulary, present, cooccur, library)
+    if sib is not None:
+        evidences.append(sib)
+    for e in evidences:
+        if e.kind != "relation" and needs_ce_channel(e.candidate) and not has_ce_channel(present):
+            e.score *= 0.2  # no other counter-electrode quantity was recorded in this file
+    evidences.sort(key=lambda e: -e.score)
+    def rival(e):  # a relation with the wrong units is no rival
+        return e.kind != "relation" or e.extras.get("scale_match", 1.0) >= 0.5
+
+    rivals = [e for e in evidences[1:] if rival(e)] if evidences else []
+    if (evidences and evidences[0].score < abstain_below and evidences[0].kind == "relation"
+            and evidences[0].score >= 0.3 and evidences[0].extras.get("r2", 0) >= 0.8
+            and evidences[0].extras.get("scale_match", 0) >= 0.5
+            and (not rivals or rivals[0].score <= 0.25 * evidences[0].score)):
+        top = evidences[0]
+        return {"verdict": "NAME", "name": top.candidate, "confidence": round(0.5 * top.score, 3),
+                "alternatives": [e.candidate for e in evidences[1:3]],
+                "evidence": f"approximate relation, far ahead of every alternative: {top.detail}",
+                "ranking": [(e.candidate, round(e.score, 3), e.detail[:90]) for e in evidences[:5]]}
+    if not evidences or evidences[0].score < abstain_below:
+        return {"verdict": "ABSTAIN", "name": "NONE", "confidence": evidences[0].score if evidences else 0.0,
+                "alternatives": [e.candidate for e in evidences[:2]],
+                "ranking": [(e.candidate, round(e.score, 3), e.detail[:90]) for e in evidences[:5]],
+                "evidence": "; ".join(f"{e.candidate}: {e.detail}" for e in evidences[:3]) or "no candidate fits"}
+    top = evidences[0]
+    margin = top.score - (evidences[1].score if len(evidences) > 1 else 0.0)
+    return {"verdict": "NAME", "name": top.candidate, "confidence": round(min(1.0, min(1.0, top.score) * (0.5 + margin)), 3),
+            "alternatives": [e.candidate for e in evidences[1:3]],
+            "evidence": f"{top.kind}: {top.detail}", "ranking": [(e.candidate, round(e.score, 3), e.detail[:90]) for e in evidences[:5]]}