roms-tools 3.3.0__py3-none-any.whl → 3.4.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (174) hide show
  1. roms_tools/__init__.py +1 -1
  2. roms_tools/analysis/cdr_ensemble.py +10 -13
  3. roms_tools/analysis/roms_output.py +5 -304
  4. roms_tools/{download.py → datasets/download.py} +1 -0
  5. roms_tools/{setup → datasets}/lat_lon_datasets.py +76 -64
  6. roms_tools/{setup → datasets}/river_datasets.py +9 -4
  7. roms_tools/datasets/roms_dataset.py +767 -0
  8. roms_tools/datasets/utils.py +475 -0
  9. roms_tools/{setup/fill.py → fill.py} +110 -13
  10. roms_tools/plot.py +4 -4
  11. roms_tools/setup/boundary_forcing.py +51 -43
  12. roms_tools/setup/cdr_release.py +2 -4
  13. roms_tools/setup/grid.py +29 -12
  14. roms_tools/setup/initial_conditions.py +19 -19
  15. roms_tools/setup/nesting.py +8 -4
  16. roms_tools/setup/river_forcing.py +4 -4
  17. roms_tools/setup/surface_forcing.py +14 -9
  18. roms_tools/setup/tides.py +1 -1
  19. roms_tools/setup/topography.py +10 -2
  20. roms_tools/setup/utils.py +72 -524
  21. roms_tools/tests/test_analysis/test_cdr_ensemble.py +4 -6
  22. roms_tools/tests/test_analysis/test_roms_output.py +1 -220
  23. roms_tools/tests/{test_setup → test_datasets}/test_lat_lon_datasets.py +4 -4
  24. roms_tools/tests/{test_setup → test_datasets}/test_river_datasets.py +1 -1
  25. roms_tools/tests/test_datasets/test_roms_dataset.py +539 -0
  26. roms_tools/tests/test_datasets/test_utils.py +527 -0
  27. roms_tools/tests/{test_setup/test_fill.py → test_fill.py} +72 -9
  28. roms_tools/tests/test_setup/test_boundary_forcing.py +57 -138
  29. roms_tools/tests/test_setup/test_cdr_release.py +4 -5
  30. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zarr.json +293 -2021
  31. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/zarr.json +294 -2022
  32. roms_tools/tests/test_setup/test_grid.py +42 -1
  33. roms_tools/tests/test_setup/test_initial_conditions.py +3 -94
  34. roms_tools/tests/test_setup/test_nesting.py +2 -1
  35. roms_tools/tests/test_setup/test_surface_forcing.py +1 -1
  36. roms_tools/tests/test_setup/test_tides.py +1 -1
  37. roms_tools/tests/test_setup/test_utils.py +100 -15
  38. roms_tools/tests/test_tiling/test_partition.py +63 -15
  39. roms_tools/tests/test_utils.py +78 -0
  40. roms_tools/tiling/partition.py +81 -211
  41. roms_tools/utils.py +193 -0
  42. {roms_tools-3.3.0.dist-info → roms_tools-3.4.0.dist-info}/METADATA +1 -1
  43. {roms_tools-3.3.0.dist-info → roms_tools-3.4.0.dist-info}/RECORD +46 -170
  44. {roms_tools-3.3.0.dist-info → roms_tools-3.4.0.dist-info}/WHEEL +1 -1
  45. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/c/0/0/0 +0 -0
  46. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/zarr.json +0 -54
  47. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/c/0/0/0 +0 -0
  48. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/zarr.json +0 -54
  49. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/c/0/0/0 +0 -0
  50. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/zarr.json +0 -54
  51. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/c/0/0/0 +0 -0
  52. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/zarr.json +0 -54
  53. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/c/0/0/0 +0 -0
  54. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/zarr.json +0 -54
  55. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/c/0/0/0 +0 -0
  56. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/zarr.json +0 -54
  57. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/c/0/0/0 +0 -0
  58. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/zarr.json +0 -54
  59. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/c/0/0/0 +0 -0
  60. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/zarr.json +0 -54
  61. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/c/0/0/0 +0 -0
  62. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/zarr.json +0 -54
  63. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/c/0/0/0 +0 -0
  64. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/zarr.json +0 -54
  65. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/c/0/0/0 +0 -0
  66. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/zarr.json +0 -54
  67. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/c/0/0/0 +0 -0
  68. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/zarr.json +0 -54
  69. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/c/0/0/0 +0 -0
  70. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/zarr.json +0 -54
  71. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/c/0/0/0 +0 -0
  72. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/zarr.json +0 -54
  73. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/c/0/0/0 +0 -0
  74. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/zarr.json +0 -54
  75. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/c/0/0/0 +0 -0
  76. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/zarr.json +0 -54
  77. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/c/0/0/0 +0 -0
  78. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/zarr.json +0 -54
  79. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/c/0/0/0 +0 -0
  80. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/zarr.json +0 -54
  81. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/c/0/0/0 +0 -0
  82. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/zarr.json +0 -54
  83. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/c/0/0/0 +0 -0
  84. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/zarr.json +0 -54
  85. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/c/0/0/0 +0 -0
  86. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/zarr.json +0 -54
  87. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/c/0/0/0 +0 -0
  88. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/zarr.json +0 -54
  89. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/c/0/0/0 +0 -0
  90. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/zarr.json +0 -54
  91. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/c/0/0/0 +0 -0
  92. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/zarr.json +0 -54
  93. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_west/c/0/0/0 +0 -0
  94. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_west/zarr.json +0 -54
  95. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/c/0/0/0 +0 -0
  96. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/zarr.json +0 -54
  97. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_west/c/0/0/0 +0 -0
  98. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_west/zarr.json +0 -54
  99. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_west/c/0/0/0 +0 -0
  100. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_west/zarr.json +0 -54
  101. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_west/c/0/0/0 +0 -0
  102. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_west/zarr.json +0 -54
  103. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_west/c/0/0/0 +0 -0
  104. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_west/zarr.json +0 -54
  105. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_west/c/0/0/0 +0 -0
  106. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_west/zarr.json +0 -54
  107. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_west/c/0/0/0 +0 -0
  108. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_west/zarr.json +0 -54
  109. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_west/c/0/0/0 +0 -0
  110. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_west/zarr.json +0 -54
  111. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_west/c/0/0/0 +0 -0
  112. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_west/zarr.json +0 -54
  113. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_west/c/0/0/0 +0 -0
  114. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_west/zarr.json +0 -54
  115. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_west/c/0/0/0 +0 -0
  116. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_west/zarr.json +0 -54
  117. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_west/c/0/0/0 +0 -0
  118. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_west/zarr.json +0 -54
  119. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_west/c/0/0/0 +0 -0
  120. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_west/zarr.json +0 -54
  121. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_west/c/0/0/0 +0 -0
  122. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_west/zarr.json +0 -54
  123. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_west/c/0/0/0 +0 -0
  124. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_west/zarr.json +0 -54
  125. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_west/c/0/0/0 +0 -0
  126. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_west/zarr.json +0 -54
  127. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_west/c/0/0/0 +0 -0
  128. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_west/zarr.json +0 -54
  129. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_west/c/0/0/0 +0 -0
  130. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_west/zarr.json +0 -54
  131. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_west/c/0/0/0 +0 -0
  132. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_west/zarr.json +0 -54
  133. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_west/c/0/0/0 +0 -0
  134. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_west/zarr.json +0 -54
  135. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_west/c/0/0/0 +0 -0
  136. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_west/zarr.json +0 -54
  137. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_west/c/0/0/0 +0 -0
  138. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_west/zarr.json +0 -54
  139. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_west/c/0/0/0 +0 -0
  140. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_west/zarr.json +0 -54
  141. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_west/c/0/0/0 +0 -0
  142. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_west/zarr.json +0 -54
  143. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatC_west/c/0/0/0 +0 -0
  144. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatC_west/zarr.json +0 -54
  145. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatChl_west/c/0/0/0 +0 -0
  146. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatChl_west/zarr.json +0 -54
  147. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatFe_west/c/0/0/0 +0 -0
  148. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatFe_west/zarr.json +0 -54
  149. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatP_west/c/0/0/0 +0 -0
  150. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatP_west/zarr.json +0 -54
  151. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatSi_west/c/0/0/0 +0 -0
  152. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatSi_west/zarr.json +0 -54
  153. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diazC_west/c/0/0/0 +0 -0
  154. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diazC_west/zarr.json +0 -54
  155. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diazChl_west/c/0/0/0 +0 -0
  156. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diazChl_west/zarr.json +0 -54
  157. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diazFe_west/c/0/0/0 +0 -0
  158. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diazFe_west/zarr.json +0 -54
  159. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diazP_west/c/0/0/0 +0 -0
  160. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diazP_west/zarr.json +0 -54
  161. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spC_west/c/0/0/0 +0 -0
  162. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spC_west/zarr.json +0 -54
  163. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spCaCO3_west/c/0/0/0 +0 -0
  164. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spCaCO3_west/zarr.json +0 -54
  165. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spChl_west/c/0/0/0 +0 -0
  166. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spChl_west/zarr.json +0 -54
  167. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spFe_west/c/0/0/0 +0 -0
  168. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spFe_west/zarr.json +0 -54
  169. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spP_west/c/0/0/0 +0 -0
  170. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/spP_west/zarr.json +0 -54
  171. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/zooC_west/c/0/0/0 +0 -0
  172. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/zooC_west/zarr.json +0 -54
  173. {roms_tools-3.3.0.dist-info → roms_tools-3.4.0.dist-info}/licenses/LICENSE +0 -0
  174. {roms_tools-3.3.0.dist-info → roms_tools-3.4.0.dist-info}/top_level.txt +0 -0
@@ -7,12 +7,11 @@ from pathlib import Path
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7
  import numpy as np
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8
  import xarray as xr
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9
 
10
- from roms_tools.download import download_river_data
10
+ from roms_tools.datasets.download import download_river_data
11
+ from roms_tools.datasets.utils import check_dataset, select_relevant_times
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12
  from roms_tools.setup.utils import (
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13
  assign_dates_to_climatology,
13
- check_dataset,
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  gc_dist,
15
- select_relevant_times,
16
15
  )
17
16
  from roms_tools.utils import load_data
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17
 
@@ -198,7 +197,13 @@ class RiverDataset:
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197
  """
199
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  time_dim = self.dim_names["time"]
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199
 
201
- ds = select_relevant_times(ds, time_dim, self.start_time, self.end_time, False)
200
+ ds = select_relevant_times(
201
+ ds=ds,
202
+ time_dim=time_dim,
203
+ time_coord=time_dim,
204
+ start_time=self.start_time,
205
+ end_time=self.end_time,
206
+ )
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207
 
203
208
  return ds
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