roms-tools 2.7.0__py3-none-any.whl → 3.0.0__py3-none-any.whl

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Files changed (1066) hide show
  1. ci/environment-with-xesmf.yml +2 -1
  2. ci/environment.yml +2 -1
  3. roms_tools/__init__.py +10 -9
  4. roms_tools/analysis/roms_output.py +23 -66
  5. roms_tools/constants.py +3 -0
  6. roms_tools/download.py +1 -1
  7. roms_tools/plot.py +14 -10
  8. roms_tools/regrid.py +3 -2
  9. roms_tools/setup/boundary_forcing.py +30 -27
  10. roms_tools/setup/cdr_forcing.py +997 -836
  11. roms_tools/setup/cdr_release.py +537 -0
  12. roms_tools/setup/datasets.py +51 -16
  13. roms_tools/setup/fill.py +1 -1
  14. roms_tools/setup/grid.py +202 -76
  15. roms_tools/setup/initial_conditions.py +28 -24
  16. roms_tools/setup/mask.py +5 -3
  17. roms_tools/setup/nesting.py +14 -11
  18. roms_tools/setup/river_forcing.py +55 -45
  19. roms_tools/setup/surface_forcing.py +154 -41
  20. roms_tools/setup/tides.py +19 -15
  21. roms_tools/setup/topography.py +10 -6
  22. roms_tools/setup/utils.py +371 -101
  23. roms_tools/tests/test_analysis/test_roms_output.py +119 -36
  24. roms_tools/tests/test_regrid.py +3 -1
  25. roms_tools/tests/test_setup/test_boundary_forcing.py +57 -7
  26. roms_tools/tests/test_setup/test_cdr_forcing.py +900 -714
  27. roms_tools/tests/test_setup/test_cdr_release.py +388 -0
  28. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_east/c/0/0/0 +0 -0
  29. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_east/zarr.json +54 -0
  30. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_north/c/0/0/0 +0 -0
  31. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_north/zarr.json +54 -0
  32. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_south/c/0/0/0 +0 -0
  33. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_south/zarr.json +54 -0
  34. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_west/c/0/0/0 +0 -0
  35. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_west/zarr.json +54 -0
  36. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_east/c/0/0/0 +0 -0
  37. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_east/zarr.json +54 -0
  38. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_north/c/0/0/0 +0 -0
  39. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_north/zarr.json +54 -0
  40. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_south/c/0/0/0 +0 -0
  41. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_south/zarr.json +54 -0
  42. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_west/c/0/0/0 +0 -0
  43. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_west/zarr.json +54 -0
  44. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_east/c/0/0/0 +0 -0
  45. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_east/zarr.json +54 -0
  46. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_north/c/0/0/0 +0 -0
  47. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_north/zarr.json +54 -0
  48. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_south/c/0/0/0 +0 -0
  49. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_south/zarr.json +54 -0
  50. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_west/c/0/0/0 +0 -0
  51. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_west/zarr.json +54 -0
  52. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_east/c/0/0/0 +0 -0
  53. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_east/zarr.json +54 -0
  54. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_north/c/0/0/0 +0 -0
  55. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_north/zarr.json +54 -0
  56. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_south/c/0/0/0 +0 -0
  57. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_south/zarr.json +54 -0
  58. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_west/c/0/0/0 +0 -0
  59. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_west/zarr.json +54 -0
  60. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_east/c/0/0/0 +0 -0
  61. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_east/zarr.json +54 -0
  62. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_north/c/0/0/0 +0 -0
  63. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_north/zarr.json +54 -0
  64. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_south/c/0/0/0 +0 -0
  65. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_south/zarr.json +54 -0
  66. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_west/c/0/0/0 +0 -0
  67. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_west/zarr.json +54 -0
  68. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_east/c/0/0/0 +0 -0
  69. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_east/zarr.json +54 -0
  70. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_north/c/0/0/0 +0 -0
  71. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_north/zarr.json +54 -0
  72. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_south/c/0/0/0 +0 -0
  73. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_south/zarr.json +54 -0
  74. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_west/c/0/0/0 +0 -0
  75. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_west/zarr.json +54 -0
  76. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_east/c/0/0/0 +0 -0
  77. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_east/zarr.json +54 -0
  78. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_north/c/0/0/0 +0 -0
  79. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_north/zarr.json +54 -0
  80. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_south/c/0/0/0 +0 -0
  81. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_south/zarr.json +54 -0
  82. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_west/c/0/0/0 +0 -0
  83. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_west/zarr.json +54 -0
  84. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_east/c/0/0/0 +0 -0
  85. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_east/zarr.json +54 -0
  86. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_north/c/0/0/0 +0 -0
  87. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_north/zarr.json +54 -0
  88. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_south/c/0/0/0 +0 -0
  89. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_south/zarr.json +54 -0
  90. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_west/c/0/0/0 +0 -0
  91. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_west/zarr.json +54 -0
  92. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_east/c/0/0/0 +0 -0
  93. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_east/zarr.json +54 -0
  94. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_north/c/0/0/0 +0 -0
  95. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_north/zarr.json +54 -0
  96. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_south/c/0/0/0 +0 -0
  97. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_south/zarr.json +54 -0
  98. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_west/c/0/0/0 +0 -0
  99. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_west/zarr.json +54 -0
  100. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_east/c/0/0/0 +0 -0
  101. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_east/zarr.json +54 -0
  102. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_north/c/0/0/0 +0 -0
  103. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_north/zarr.json +54 -0
  104. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_south/c/0/0/0 +0 -0
  105. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_south/zarr.json +54 -0
  106. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_west/c/0/0/0 +0 -0
  107. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_west/zarr.json +54 -0
  108. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_east/c/0/0/0 +0 -0
  109. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_east/zarr.json +54 -0
  110. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_north/c/0/0/0 +0 -0
  111. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_north/zarr.json +54 -0
  112. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_south/c/0/0/0 +0 -0
  113. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_south/zarr.json +54 -0
  114. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_west/c/0/0/0 +0 -0
  115. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_west/zarr.json +54 -0
  116. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_east/c/0/0/0 +0 -0
  117. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_east/zarr.json +54 -0
  118. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_north/c/0/0/0 +0 -0
  119. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_north/zarr.json +54 -0
  120. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_south/c/0/0/0 +0 -0
  121. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_south/zarr.json +54 -0
  122. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_west/c/0/0/0 +0 -0
  123. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_west/zarr.json +54 -0
  124. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_east/c/0/0/0 +0 -0
  125. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_east/zarr.json +54 -0
  126. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_north/c/0/0/0 +0 -0
  127. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_north/zarr.json +54 -0
  128. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_south/c/0/0/0 +0 -0
  129. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_south/zarr.json +54 -0
  130. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_west/c/0/0/0 +0 -0
  131. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_west/zarr.json +54 -0
  132. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_east/c/0/0/0 +0 -0
  133. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_east/zarr.json +54 -0
  134. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_north/c/0/0/0 +0 -0
  135. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_north/zarr.json +54 -0
  136. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_south/c/0/0/0 +0 -0
  137. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_south/zarr.json +54 -0
  138. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_west/c/0/0/0 +0 -0
  139. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_west/zarr.json +54 -0
  140. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_east/c/0/0/0 +0 -0
  141. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_east/zarr.json +54 -0
  142. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_north/c/0/0/0 +0 -0
  143. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_north/zarr.json +54 -0
  144. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_south/c/0/0/0 +0 -0
  145. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_south/zarr.json +54 -0
  146. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_west/c/0/0/0 +0 -0
  147. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_west/zarr.json +54 -0
  148. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_east/c/0/0/0 +0 -0
  149. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_east/zarr.json +54 -0
  150. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_north/c/0/0/0 +0 -0
  151. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_north/zarr.json +54 -0
  152. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_south/c/0/0/0 +0 -0
  153. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_south/zarr.json +54 -0
  154. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_west/c/0/0/0 +0 -0
  155. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_west/zarr.json +54 -0
  156. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_east/c/0/0/0 +0 -0
  157. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_east/zarr.json +54 -0
  158. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_north/c/0/0/0 +0 -0
  159. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_north/zarr.json +54 -0
  160. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_south/c/0/0/0 +0 -0
  161. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_south/zarr.json +54 -0
  162. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_west/c/0/0/0 +0 -0
  163. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_west/zarr.json +54 -0
  164. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/abs_time/c/0 +0 -0
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