roms-tools 2.5.0__py3-none-any.whl → 2.6.0__py3-none-any.whl

roms_tools/tests/test_setup/test_river_forcing.py

@@ -394,13 +394,16 @@ class TestRiverForcingGeneral:
 
 
 class TestRiverForcingWithoutPrescribedIndices:
+    start_time = datetime(1998, 1, 1)
+    end_time = datetime(1998, 3, 1)
+
     def test_logging_message(self, iceland_test_grid, caplog):
 
         with caplog.at_level(logging.INFO):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
             )
         # Verify the info message in the log
         assert "No river indices provided." in caplog.text
@@ -427,21 +430,20 @@ class TestRiverForcingWithoutPrescribedIndices:
         )
 
         with pytest.raises(ValueError, match="No relevant rivers found."):
-            RiverForcing(
-                grid=grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
-            )
+            RiverForcing(grid=grid, start_time=self.start_time, end_time=self.end_time)
 
 
 class TestRiverForcingWithPrescribedIndices:
-    def test_logging_message(self, iceland_test_grid, single_cell_indices, caplog):
+    start_time = datetime(1998, 1, 1)
+    end_time = datetime(1998, 3, 1)
+
+    def test_logging_message(self, single_cell_indices, caplog, iceland_test_grid):
 
         with caplog.at_level(logging.INFO):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=single_cell_indices,
             )
         # Verify the info message in the log
@@ -450,16 +452,13 @@ class TestRiverForcingWithPrescribedIndices:
     @pytest.mark.parametrize(
         "indices_fixture", ["single_cell_indices", "multi_cell_indices"]
     )
-    def test_indices_stay_untouched(self, iceland_test_grid, indices_fixture, request):
+    def test_indices_stay_untouched(self, indices_fixture, request, iceland_test_grid):
         indices = request.getfixturevalue(indices_fixture)
 
-        start_time = datetime(1998, 1, 1)
-        end_time = datetime(1998, 3, 1)
-
         river_forcing = RiverForcing(
             grid=iceland_test_grid,
-            start_time=start_time,
-            end_time=end_time,
+            start_time=self.start_time,
+            end_time=self.end_time,
             indices=indices,
         )
         river_forcing.original_indices == indices
@@ -506,7 +505,7 @@ class TestRiverForcingWithPrescribedIndices:
         assert river_forcing == river_forcing_with_prescribed_single_cell_indices
 
     def test_reproducibility_with_flipped_dictionary_entries(
-        self, iceland_test_grid, tmp_path
+        self, tmp_path, iceland_test_grid
     ):
         indices = {
             "Hvita(Olfusa)": [(8, 6)],
@@ -526,20 +525,17 @@ class TestRiverForcingWithPrescribedIndices:
             "Bruara": [(8, 6)],
         }
 
-        start_time = datetime(1998, 1, 1)
-        end_time = datetime(1998, 3, 1)
-
         river_forcing = RiverForcing(
             grid=iceland_test_grid,
-            start_time=start_time,
-            end_time=end_time,
+            start_time=self.start_time,
+            end_time=self.end_time,
             indices=indices,
         )
 
         river_forcing_from_flipped_indices = RiverForcing(
             grid=iceland_test_grid,
-            start_time=start_time,
-            end_time=end_time,
+            start_time=self.start_time,
+            end_time=self.end_time,
             indices=flipped_indices,
         )
 
@@ -568,8 +564,8 @@ class TestRiverForcingWithPrescribedIndices:
             ):
                 RiverForcing(
                     grid=iceland_test_grid,
-                    start_time=datetime(1998, 1, 1),
-                    end_time=datetime(1998, 3, 1),
+                    start_time=self.start_time,
+                    end_time=self.end_time,
                     indices=indices,
                 )
 
@@ -581,8 +577,8 @@ class TestRiverForcingWithPrescribedIndices:
         ):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=fake_indices,
             )
 
@@ -590,8 +586,8 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="`indices` must be a dictionary."):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices="invalid",
             )
 
@@ -602,8 +598,8 @@ class TestRiverForcingWithPrescribedIndices:
         ):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices={},
             )
 
@@ -612,8 +608,8 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="River name `123` must be a string."):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=indices,
             )
 
@@ -624,8 +620,8 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="must be a list of tuples."):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=indices,
             )
 
@@ -636,8 +632,8 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="must be a tuple of length 2"):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=indices,
             )
 
@@ -648,8 +644,8 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="First element of tuple for river"):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=indices,
             )
 
@@ -658,8 +654,8 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="Second element of tuple for river"):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=indices,
             )
 
@@ -668,8 +664,8 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="Value of eta_rho for river"):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=indices,
             )
 
@@ -678,8 +674,8 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="Value of xi_rho for river"):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=indices,
             )
 
@@ -688,7 +684,7 @@ class TestRiverForcingWithPrescribedIndices:
         with pytest.raises(ValueError, match="Duplicate location"):
             RiverForcing(
                 grid=iceland_test_grid,
-                start_time=datetime(1998, 1, 1),
-                end_time=datetime(1998, 3, 1),
+                start_time=self.start_time,
+                end_time=self.end_time,
                 indices=indices,
             )

roms_tools/utils.py

@@ -3,6 +3,7 @@ from pathlib import Path
 import re
 import glob
 import logging
+import warnings
 
 
 def _load_data(
@@ -139,13 +140,16 @@ def _load_data(
         if "time" in dim_names and time_chunking:
             chunks[dim_names["time"]] = 1
 
-        ds = xr.open_mfdataset(
-            matching_files,
-            decode_times=decode_times,
-            chunks=chunks,
-            **combine_kwargs,
-            **kwargs,
-        )
+        with warnings.catch_warnings():
+            warnings.filterwarnings("ignore", category=UserWarning, module="xarray")
+
+            ds = xr.open_mfdataset(
+                matching_files,
+                decode_times=decode_times,
+                chunks=chunks,
+                **combine_kwargs,
+                **kwargs,
+            )
 
         # Rechunk the dataset along the tidal constituent dimension ("ntides") after loading
         # because the original dataset does not have a chunk size of 1 along this dimension.

roms_tools/vertical_coordinate.py

@@ -220,6 +220,7 @@ def compute_depth_coordinates(
     depth = compute_depth(zeta, h, grid_ds.attrs["hc"], Cs, sigma)
 
     # Add metadata
+    depth.name = f"{depth_type}_depth_{location}"
     depth.attrs.update(
         {"long_name": f"{depth_type} depth at {location}-points", "units": "m"}
     )

{roms_tools-2.5.0.dist-info → roms_tools-2.6.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.4
 Name: roms-tools
-Version: 2.5.0
+Version: 2.6.0
 Summary: Tools for running and analysing UCLA-ROMS simulations
 Author-email: Nora Loose <nora.loose@gmail.com>, Thomas Nicholas <tom@cworthy.org>
 License: Apache-2
@@ -32,8 +32,11 @@ Requires-Dist: PyYAML
 Requires-Dist: pyamg
 Requires-Dist: bottleneck
 Requires-Dist: regionmask
+Requires-Dist: xgcm
+Requires-Dist: numba
 Provides-Extra: dask
 Requires-Dist: dask[diagnostics]; extra == "dask"
+Dynamic: license-file
 
 # ROMS-Tools
 [![Conda version](https://img.shields.io/conda/vn/conda-forge/roms-tools.svg)](https://anaconda.org/conda-forge/roms-tools)
@@ -46,37 +49,45 @@ Requires-Dist: dask[diagnostics]; extra == "dask"
 > [!Warning]
 > **This project is still in an early phase of development.**
 >
-> The [python API](https://roms-tools.readthedocs.io/en/latest/api.html) is not yet stable.
+> The [Python API](https://roms-tools.readthedocs.io/en/latest/api.html) is not yet stable.
 > Therefore whilst you are welcome to try out using the package, we cannot yet guarantee backwards compatibility.
 > We expect to reach a more stable version in Q1 2025.
 
 ## Overview
 
-A suite of Python tools for setting up a [ROMS](https://github.com/CESR-lab/ucla-roms) simulation.
+A suite of Python tools for setting up and analyzing a [UCLA-ROMS](https://github.com/CESR-lab/ucla-roms) simulation.
 
 ## Installation
 
-### Installation from conda forge
+### ⚡️ **Installation from Conda-Forge**
+
+To install `ROMS-Tools` with all dependencies, including `xesmf` and `dask`, use:
 
 ```bash
 conda install -c conda-forge roms-tools
 ```
 
-This command installs `ROMS-Tools` along with its `dask` dependency.
+> [!Note]
+>  Installation from Conda-Forge is the recommended installation method to ensure all features of `ROMS-Tools` are available.
+
+### 📦 **Installation from PyPI (pip)**
 
-### Installation from pip
+You can also install `ROMS-Tools` from `pip`:
 
 ```bash
 pip install roms-tools
 ```
 
-If you want to use `ROMS-Tools` together with dask (which we recommend), you can
-install `ROMS-Tools` along with the additional dependency via:
+If you want to use `ROMS-Tools` with `dask` (recommended for parallel and out-of-core computation), install it with the additional dependency:
 
 ```bash
 pip install roms-tools[dask]
 ```
 
+> [!Note]
+>  The PyPI versions of `ROMS-Tools` do not include `xesmf`, so some features will be unavailable.
+
+
 ### Installation from GitHub
 
 To obtain the latest development version, first clone the source repository:
@@ -89,7 +100,7 @@ cd roms-tools
 Next, install and activate the following conda environment:
 
 ```bash
-conda env create -f ci/environment.yml
+conda env create -f ci/environment-with-xesmf.yml
 conda activate romstools-test
 ```
 
@@ -99,7 +110,7 @@ Finally, install `ROMS-Tools` in the same environment:
 pip install -e .
 ```
 
-If you want to use `ROMS-Tools` together with dask (which we recommend), you can
+If you want to use `ROMS-Tools` with `dask` (recommended for parallel and out-of-core computation), you can
 install `ROMS-Tools` along with the additional dependency via:
 
 ```bash

{roms_tools-2.5.0.dist-info → roms_tools-2.6.0.dist-info}/RECORD

@@ -1,27 +1,29 @@
+ci/environment-with-xesmf.yml,sha256=c8x2YFBBpZvy6pnlUMTO1-8myyKsVm0Y-IWPigT3PKo,217
 ci/environment.yml,sha256=Ehxy6nYiVQXoS7EGlmNm2G0ZPHg6VFBGY1IflApIhIY,207
 roms_tools/__init__.py,sha256=jRghiteCoPjJvJjkFI36ocGyqzcTN5m-5eCa_DNQ9Dw,988
 roms_tools/download.py,sha256=W6S_DFVJDXat2w9MfyyHyushrswbpUI2hxegSuua1XE,6248
-roms_tools/plot.py,sha256=OPmoqDsl34P0hO-pmlw2Y7oastqhDeSr7LZeTluHBvM,13230
-roms_tools/regrid.py,sha256=OBlW-KnQfXmxSZ5MwNoroxU51sI8-3ZRQhEPX3maj1A,5173
-roms_tools/utils.py,sha256=rahrge6sA_D9ndvkXV5qU7x8Kj3MxqHT84ZhzjYHSPg,13153
-roms_tools/vertical_coordinate.py,sha256=iNYdj7FIuCs867eOraqwbHc4gtSr8bj_-KRt-PyoMZA,6984
-roms_tools/analysis/roms_output.py,sha256=ZqET2iUgnYOIGKomJ_aLK8jDaczOek8BE77uMyJePQY,22729
+roms_tools/plot.py,sha256=33ft1wN0kc_vIvyy_sIoY-nc0k4THXWLc_k7wEavNq8,17578
+roms_tools/regrid.py,sha256=BNtsJS5Oxmg0ivDQ-MLgVumeeLX15LZ7cp_RHAhUIOI,10222
+roms_tools/utils.py,sha256=eveBkWuDsXNJADFMWFgRMHdbXkZlTyVK9dN2YAnjYJ4,13323
+roms_tools/vertical_coordinate.py,sha256=txObO4Duf-8Ef2r4JgK3C1PsDmaF7KeRngDTKx7MPHg,7034
+roms_tools/analysis/roms_output.py,sha256=Wm91jUICcmKFOaayt7ADWUopowBcfuh2dyk6Id65ICo,27915
+roms_tools/analysis/utils.py,sha256=RwV7SDBjx-pzJOJ7fG3q0qwfbwXThkcI6wAgeIe1bzY,5431
 roms_tools/setup/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-roms_tools/setup/boundary_forcing.py,sha256=UwtxlSgKDerGiChKQm7-55Ib-bG4VIE2nX3I9ye8O9E,43705
-roms_tools/setup/datasets.py,sha256=o727Ck3bQbPeKn4Cr2l_pmDd1FyY8Ht51iuYblb_ILQ,85569
+roms_tools/setup/boundary_forcing.py,sha256=LpNBurvcUhiemmubglI5aEgbOuPpjCDBj3C8XmRV60k,43609
+roms_tools/setup/datasets.py,sha256=WDEkMbLrzmdHxU5G9x_ECJASYVpmPa2i3oXWg9Rvxc4,84822
 roms_tools/setup/fill.py,sha256=YQes_9uADZ-XZ6dBqXyvG7OAp7UrWhX-p3pR1gD6Od4,11120
-roms_tools/setup/grid.py,sha256=Wal6BhmD8uDz89hoK2QdKBbU7KUAhfduq3cDm8HnEFE,50047
-roms_tools/setup/initial_conditions.py,sha256=l7GiUYBod55SRjxuF3McqALreTOll6d2H4v3YqjXOy4,36253
+roms_tools/setup/grid.py,sha256=DWNPXoG2D76u6QMjOf_f5byvzGXT8gFOfiantUvnVjg,49408
+roms_tools/setup/initial_conditions.py,sha256=uVLkqpo1l1uw_LNjugypNVX2Tio5Hmi4txJoGC7P8G8,36012
 roms_tools/setup/mask.py,sha256=IK2SrVnMJwZjE4jNFtzMQhp1c5c8SUO45OIpCIrNSis,3413
-roms_tools/setup/nesting.py,sha256=ftpGBQONHWDBnfGpNv-XpeF1RIo0m0ac9qMztAH2lrI,26568
-roms_tools/setup/river_forcing.py,sha256=_kJgETgRP10s5xZT-aRPFVzMvjmazkHtLFQu65h5fPs,33135
-roms_tools/setup/surface_forcing.py,sha256=xtd5gD5iMChxM1C-RhNbNtqRC-Gv8YmIrNCkkVo-rLU,24075
-roms_tools/setup/tides.py,sha256=TAAP48oJ1g25PKsaNFwEIDTkatxLac-QpFyWlxdciRQ,27177
-roms_tools/setup/topography.py,sha256=dd3Zp5_1pPcpN1GlYOcJez3ulumrcG4MJTgIg6SnBDI,14114
+roms_tools/setup/nesting.py,sha256=j8l2zVCfhxNNtN4ZiSpipSlPXYmaoZWIPw6zImafsuk,26511
+roms_tools/setup/river_forcing.py,sha256=vH8sGGZ4fmcb8gDFfnwd1s9DflYksNI8e61WQyP1MxY,32824
+roms_tools/setup/surface_forcing.py,sha256=HwIiA0qS64gBcq2ktqZx8ZhTIFRjweRZZe3haMTjCOg,23980
+roms_tools/setup/tides.py,sha256=2eFzQMVnlcHsG83AEhTUfGgQbO0CqI_pDb8YeZ5APTU,27088
+roms_tools/setup/topography.py,sha256=s1dSF0ZWCNdrZ25yv-pUcCgufxRmGgy3yr_VhdRM7LU,14126
 roms_tools/setup/utils.py,sha256=S9_alsNEORLjEA74LVbgaxhWyVKa-PqFSPida9MQNxw,40911
 roms_tools/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-roms_tools/tests/test_regrid.py,sha256=-hFsULcJOJs90UdHrEcZa455vMZfcmXeFEFt8mnCVyo,1885
-roms_tools/tests/test_analysis/test_roms_output.py,sha256=vB4mADDp8pauUFA3pO2PjfuzYyOKx6su269J18xzS-s,15106
+roms_tools/tests/test_regrid.py,sha256=-wzZ31BkUdSn81jq5NF1wnuaBRfd0aiYgQZEv5E_h9w,4682
+roms_tools/tests/test_analysis/test_roms_output.py,sha256=bckL5onorFl7tx9Mu5gZ1SyPmJya0j5IaiF4TcNjj8s,16556
 roms_tools/tests/test_setup/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 roms_tools/tests/test_setup/test_boundary_forcing.py,sha256=gET86PiGnMBejTBe69-inXpaEZL8YH4FMqyT_b8V-Zk,21183
 roms_tools/tests/test_setup/test_datasets.py,sha256=EInjmCLFNWJoO8nIQJhDtmFmMFmjcrr5L_5vJYm-qno,16435
@@ -29,7 +31,7 @@ roms_tools/tests/test_setup/test_fill.py,sha256=gDHuM58d3ECQE317ZntChYt4hWCfo4eV
 roms_tools/tests/test_setup/test_grid.py,sha256=e1S8TYt21TVczaEfyeYoAU-qxUhAgiugkHA3EDAGtIQ,14095
 roms_tools/tests/test_setup/test_initial_conditions.py,sha256=4LiULWmuktHoOty94asiFXgGNysag2okiosxG00om9M,15697
 roms_tools/tests/test_setup/test_nesting.py,sha256=WUhyP9mlMYwAJQgbgqjEU1zOyb8QD3XMgSZvHR_9LE8,18764
-roms_tools/tests/test_setup/test_river_forcing.py,sha256=kkbIeCELfLCjvx2xT5_uP_naZq3g0uXbW7PK4shkYQo,24068
+roms_tools/tests/test_setup/test_river_forcing.py,sha256=gtqq67gdo4M0r5NgZT2C6gwYRikbjMuMwfE29VyLoIM,23839
 roms_tools/tests/test_setup/test_surface_forcing.py,sha256=uZAZLbX6zK_e5CYOVZvZLp_i28A1o372naeaOeF83vE,27626
 roms_tools/tests/test_setup/test_tides.py,sha256=ACFXytda3Am984QMKGxtML00KPX1LvLWlSL0FpZTqyc,8085
 roms_tools/tests/test_setup/test_topography.py,sha256=EAF-zCHfo6XnXQfBTrSZLuZDVzegWHHlrf9oBmvY0hM,4963
@@ -1063,8 +1065,8 @@ roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Re/.zattrs,sha256=2z7
 roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Re/0.0.0,sha256=33Gl8otBmgqVarmAnZuEqTYS2_hVJUJh-iN1HzvaDuo,96
 roms_tools/tests/test_tiling/test_partition.py,sha256=b6EepZndVDv1B6Qt5_MbDfrFF2LtR0BF7i1t30xHEvA,7977
 roms_tools/tiling/partition.py,sha256=ZxDNGIKXZf_7eEzw9cxGP2XR_WBhZ4WCeIMl7_IdskA,12302
-roms_tools-2.5.0.dist-info/LICENSE,sha256=yiff76E4xRioW2bHhlPpyYpstmePQBx2bF8HhgQhSsg,11318
-roms_tools-2.5.0.dist-info/METADATA,sha256=Ob7eifjJJFHDeaNbl52ARWLzMPP7yEZFabCVC_PEc_o,4244
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-roms_tools-2.5.0.dist-info/top_level.txt,sha256=aAf4T4nYQSkay5iKJ9kmTjlDgd4ETdp9OSlB4sJdt8Y,19
-roms_tools-2.5.0.dist-info/RECORD,,
+roms_tools-2.6.0.dist-info/licenses/LICENSE,sha256=yiff76E4xRioW2bHhlPpyYpstmePQBx2bF8HhgQhSsg,11318
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+roms_tools-2.6.0.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
+roms_tools-2.6.0.dist-info/top_level.txt,sha256=aAf4T4nYQSkay5iKJ9kmTjlDgd4ETdp9OSlB4sJdt8Y,19
+roms_tools-2.6.0.dist-info/RECORD,,

{roms_tools-2.5.0.dist-info → roms_tools-2.6.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.8.2)
+Generator: setuptools (78.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any