roms-tools 2.4.0__py3-none-any.whl → 2.6.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (214) hide show
  1. ci/environment-with-xesmf.yml +16 -0
  2. roms_tools/__init__.py +1 -1
  3. roms_tools/analysis/roms_output.py +339 -234
  4. roms_tools/analysis/utils.py +137 -0
  5. roms_tools/plot.py +353 -214
  6. roms_tools/regrid.py +154 -9
  7. roms_tools/setup/boundary_forcing.py +51 -37
  8. roms_tools/setup/datasets.py +129 -74
  9. roms_tools/setup/grid.py +32 -33
  10. roms_tools/setup/initial_conditions.py +30 -37
  11. roms_tools/setup/nesting.py +238 -64
  12. roms_tools/setup/river_forcing.py +256 -86
  13. roms_tools/setup/surface_forcing.py +40 -28
  14. roms_tools/setup/tides.py +10 -13
  15. roms_tools/setup/topography.py +27 -4
  16. roms_tools/setup/utils.py +28 -12
  17. roms_tools/tests/test_analysis/test_roms_output.py +299 -80
  18. roms_tools/tests/test_regrid.py +85 -2
  19. roms_tools/tests/test_setup/test_boundary_forcing.py +63 -0
  20. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zattrs +3 -1
  21. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zmetadata +3 -1
  22. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/0.0.0 +0 -0
  23. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_south/0.0.0 +0 -0
  24. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/0.0.0 +0 -0
  25. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_east/0.0.0 +0 -0
  26. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_south/0.0.0 +0 -0
  27. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/0.0.0 +0 -0
  28. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_east/0.0.0 +0 -0
  29. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_south/0.0.0 +0 -0
  30. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/0.0.0 +0 -0
  31. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_east/0.0.0 +0 -0
  32. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_south/0.0.0 +0 -0
  33. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/0.0.0 +0 -0
  34. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_east/0.0.0 +0 -0
  35. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_south/0.0.0 +0 -0
  36. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/0.0.0 +0 -0
  37. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_east/0.0.0 +0 -0
  38. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_south/0.0.0 +0 -0
  39. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/0.0.0 +0 -0
  40. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_east/0.0.0 +0 -0
  41. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_south/0.0.0 +0 -0
  42. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/0.0.0 +0 -0
  43. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_east/0.0.0 +0 -0
  44. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_south/0.0.0 +0 -0
  45. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/0.0.0 +0 -0
  46. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_east/0.0.0 +0 -0
  47. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_south/0.0.0 +0 -0
  48. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/0.0.0 +0 -0
  49. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_east/0.0.0 +0 -0
  50. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_south/0.0.0 +0 -0
  51. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/0.0.0 +0 -0
  52. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_east/0.0.0 +0 -0
  53. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_south/0.0.0 +0 -0
  54. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/0.0.0 +0 -0
  55. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_east/0.0.0 +0 -0
  56. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_south/0.0.0 +0 -0
  57. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/0.0.0 +0 -0
  58. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_east/0.0.0 +0 -0
  59. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_north/0.0.0 +0 -0
  60. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_south/0.0.0 +0 -0
  61. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/0.0.0 +0 -0
  62. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_east/0.0.0 +0 -0
  63. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_south/0.0.0 +0 -0
  64. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/0.0.0 +0 -0
  65. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_east/0.0.0 +0 -0
  66. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_south/0.0.0 +0 -0
  67. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/0.0.0 +0 -0
  68. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_east/0.0.0 +0 -0
  69. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_south/0.0.0 +0 -0
  70. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/0.0.0 +0 -0
  71. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_east/0.0.0 +0 -0
  72. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_south/0.0.0 +0 -0
  73. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/0.0.0 +0 -0
  74. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_east/0.0.0 +0 -0
  75. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_north/0.0.0 +0 -0
  76. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_south/0.0.0 +0 -0
  77. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/0.0.0 +0 -0
  78. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_east/0.0.0 +0 -0
  79. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_north/0.0.0 +0 -0
  80. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_south/0.0.0 +0 -0
  81. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/0.0.0 +0 -0
  82. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_east/0.0.0 +0 -0
  83. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_north/0.0.0 +0 -0
  84. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_south/0.0.0 +0 -0
  85. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/0.0.0 +0 -0
  86. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_east/0.0.0 +0 -0
  87. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_north/0.0.0 +0 -0
  88. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_south/0.0.0 +0 -0
  89. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/0.0.0 +0 -0
  90. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_east/0.0.0 +0 -0
  91. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_north/0.0.0 +0 -0
  92. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_south/0.0.0 +0 -0
  93. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/0.0.0 +0 -0
  94. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_east/0.0.0 +0 -0
  95. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_north/0.0.0 +0 -0
  96. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_south/0.0.0 +0 -0
  97. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/0.0.0 +0 -0
  98. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_east/0.0.0 +0 -0
  99. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_north/0.0.0 +0 -0
  100. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_south/0.0.0 +0 -0
  101. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/0.0.0 +0 -0
  102. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_east/0.0.0 +0 -0
  103. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_north/0.0.0 +0 -0
  104. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_south/0.0.0 +0 -0
  105. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_west/0.0.0 +0 -0
  106. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_east/0.0.0 +0 -0
  107. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_north/0.0.0 +0 -0
  108. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_south/0.0.0 +0 -0
  109. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/0.0.0 +0 -0
  110. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_east/0.0.0 +0 -0
  111. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_north/0.0.0 +0 -0
  112. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_south/0.0.0 +0 -0
  113. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_west/0.0.0 +0 -0
  114. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_east/0.0.0 +0 -0
  115. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_north/0.0.0 +0 -0
  116. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_south/0.0.0 +0 -0
  117. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_west/0.0.0 +0 -0
  118. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_east/0.0.0 +0 -0
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  134. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/.zattrs +2 -2
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  176. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lat_u/0.0 +0 -0
  177. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lat_v/0.0 +0 -0
  178. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_coarse/0.0 +0 -0
  179. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_rho/0.0 +0 -0
  180. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_u/0.0 +0 -0
  181. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_v/0.0 +0 -0
  182. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/pm/0.0 +0 -0
  183. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/pn/0.0 +0 -0
  184. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/.zattrs +1 -1
  185. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/.zmetadata +1 -1
  186. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/salt/0.0.0.0 +0 -0
  187. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/temp/0.0.0.0 +0 -0
  188. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/u/0.0.0.0 +0 -0
  189. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ubar/0.0.0 +0 -0
  190. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/v/0.0.0.0 +0 -0
  191. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/vbar/0.0.0 +0 -0
  192. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/zeta/0.0.0 +0 -0
  193. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/.zmetadata +27 -1
  194. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/nriver/.zarray +20 -0
  195. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/nriver/.zattrs +6 -0
  196. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/nriver/0 +0 -0
  197. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_location/.zattrs +1 -1
  198. roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/.zmetadata +27 -1
  199. roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/nriver/.zarray +20 -0
  200. roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/nriver/.zattrs +6 -0
  201. roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/nriver/0 +0 -0
  202. roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/river_location/.zattrs +1 -1
  203. roms_tools/tests/test_setup/test_initial_conditions.py +16 -0
  204. roms_tools/tests/test_setup/test_nesting.py +141 -104
  205. roms_tools/tests/test_setup/test_river_forcing.py +580 -266
  206. roms_tools/tests/test_setup/test_surface_forcing.py +47 -0
  207. roms_tools/tests/test_setup/test_validation.py +34 -2
  208. roms_tools/utils.py +11 -7
  209. roms_tools/vertical_coordinate.py +1 -0
  210. {roms_tools-2.4.0.dist-info → roms_tools-2.6.0.dist-info}/METADATA +22 -11
  211. {roms_tools-2.4.0.dist-info → roms_tools-2.6.0.dist-info}/RECORD +214 -206
  212. {roms_tools-2.4.0.dist-info → roms_tools-2.6.0.dist-info}/WHEEL +1 -1
  213. {roms_tools-2.4.0.dist-info → roms_tools-2.6.0.dist-info/licenses}/LICENSE +0 -0
  214. {roms_tools-2.4.0.dist-info → roms_tools-2.6.0.dist-info}/top_level.txt +0 -0
ci/environment-with-xesmf.yml ADDED
@@ -0,0 +1,16 @@
1
+ name: romstools-test
2
+ channels:
3
+ - conda-forge
4
+ - nodefaults
5
+ dependencies:
6
+ - python>=3.10
7
+ - xesmf
8
+ # testing
9
+ - zarr
10
+ - pytest
11
+ - pytest-xdist
12
+ - h5py
13
+ - flake8
14
+ - black
15
+ - pre-commit==3.8.0
16
+ - coverage
roms_tools/__init__.py CHANGED
@@ -14,7 +14,7 @@ from roms_tools.setup.surface_forcing import SurfaceForcing # noqa: F401
14
14
  from roms_tools.setup.initial_conditions import InitialConditions # noqa: F401
15
15
  from roms_tools.setup.boundary_forcing import BoundaryForcing # noqa: F401
16
16
  from roms_tools.setup.river_forcing import RiverForcing # noqa: F401
17
- from roms_tools.setup.nesting import Nesting # noqa: F401
17
+ from roms_tools.setup.nesting import ChildGrid # noqa: F401
18
18
  from roms_tools.tiling.partition import partition_netcdf # noqa: F401
19
19
  from roms_tools.analysis.roms_output import ROMSOutput # noqa: F401
20
20