roms-tools 2.4.0__py3-none-any.whl → 2.5.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- roms_tools/__init__.py +1 -1
- roms_tools/analysis/roms_output.py +77 -98
- roms_tools/plot.py +4 -2
- roms_tools/setup/boundary_forcing.py +29 -15
- roms_tools/setup/datasets.py +91 -32
- roms_tools/setup/grid.py +4 -5
- roms_tools/setup/initial_conditions.py +7 -6
- roms_tools/setup/nesting.py +237 -63
- roms_tools/setup/river_forcing.py +243 -72
- roms_tools/setup/surface_forcing.py +26 -15
- roms_tools/setup/tides.py +3 -6
- roms_tools/setup/topography.py +25 -2
- roms_tools/setup/utils.py +28 -12
- roms_tools/tests/test_analysis/test_roms_output.py +233 -70
- roms_tools/tests/test_setup/test_boundary_forcing.py +63 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zattrs +3 -1
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zmetadata +3 -1
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_south/0.0.0 +0 -0
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- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_east/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_north/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_south/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_east/0.0.0 +0 -0
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- roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/salt/0.0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/temp/0.0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/u/0.0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ubar/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/v/0.0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/vbar/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/zeta/0.0.0 +0 -0
- roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/.zmetadata +27 -1
- roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/nriver/.zarray +20 -0
- roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/nriver/.zattrs +6 -0
- roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/nriver/0 +0 -0
- roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_location/.zattrs +1 -1
- roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/.zmetadata +27 -1
- roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/nriver/.zarray +20 -0
- roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/nriver/.zattrs +6 -0
- roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/nriver/0 +0 -0
- roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/river_location/.zattrs +1 -1
- roms_tools/tests/test_setup/test_initial_conditions.py +16 -0
- roms_tools/tests/test_setup/test_nesting.py +141 -104
- roms_tools/tests/test_setup/test_river_forcing.py +587 -269
- roms_tools/tests/test_setup/test_surface_forcing.py +47 -0
- roms_tools/tests/test_setup/test_validation.py +34 -2
- {roms_tools-2.4.0.dist-info → roms_tools-2.5.0.dist-info}/METADATA +1 -1
- {roms_tools-2.4.0.dist-info → roms_tools-2.5.0.dist-info}/RECORD +208 -202
- {roms_tools-2.4.0.dist-info → roms_tools-2.5.0.dist-info}/WHEEL +1 -1
- {roms_tools-2.4.0.dist-info → roms_tools-2.5.0.dist-info}/LICENSE +0 -0
- {roms_tools-2.4.0.dist-info → roms_tools-2.5.0.dist-info}/top_level.txt +0 -0
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@@ -351,6 +351,53 @@ def test_successful_initialization_with_global_data(grid_fixture, request, use_d
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assert not sfc_forcing.use_coarse_grid
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+
def test_start_time_end_time_error(use_dask):
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"""Test error when start_time and end_time are not both provided or both None."""
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# Case 1: Only start_time provided
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with pytest.raises(
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ValueError, match="Both `start_time` and `end_time` must be provided together"
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359
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):
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SurfaceForcing(
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grid=None,
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start_time=datetime(2022, 1, 1),
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end_time=None, # end_time is None, should raise an error
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source={"name": "ERA5", "path": "era5_data.nc"},
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use_dask=use_dask,
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)
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# Case 2: Only end_time provided
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with pytest.raises(
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ValueError, match="Both `start_time` and `end_time` must be provided together"
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):
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SurfaceForcing(
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grid=None,
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start_time=None, # start_time is None, should raise an error
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end_time=datetime(2022, 1, 2),
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source={"name": "ERA5", "path": "era5_data.nc"},
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use_dask=use_dask,
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)
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def test_start_time_end_time_warning(grid_that_straddles_dateline, use_dask, caplog):
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"""Test that a warning is triggered when both start_time and end_time are None."""
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fname = Path(download_test_data("ERA5_regional_test_data.nc"))
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384
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385
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with caplog.at_level(logging.INFO):
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SurfaceForcing(
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grid=grid_that_straddles_dateline,
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start_time=None,
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389
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end_time=None,
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source={"name": "ERA5", "path": fname},
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use_dask=use_dask,
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)
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# Verify the warning message in the log
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assert (
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"Both `start_time` and `end_time` are None. No time filtering will be applied to the source data."
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in caplog.text
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)
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401
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def test_nans_filled_in(grid_that_straddles_dateline, use_dask):
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"""Test that the surface forcing fields contain no NaNs.
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@@ -70,7 +70,39 @@ def test_check_results(forcing_fixture, request):
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70
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71
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fname = _get_fname(forcing_fixture)
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72
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expected_forcing_ds = xr.open_zarr(fname, decode_timedelta=False)
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73
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-
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forcing = request.getfixturevalue(forcing_fixture)
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75
74
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76
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-
xr.testing.assert_allclose(forcing.ds, expected_forcing_ds, rtol=1.0e-5)
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75
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xr.testing.assert_allclose(forcing.ds, expected_forcing_ds, rtol=1.0e-5, atol=1e-08)
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76
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+
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77
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@pytest.mark.parametrize(
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"forcing_fixture",
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80
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[
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81
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"tidal_forcing",
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82
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"initial_conditions_with_bgc_from_climatology",
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83
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"surface_forcing",
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84
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"coarse_surface_forcing",
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85
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"corrected_surface_forcing",
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86
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"bgc_surface_forcing",
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87
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"bgc_surface_forcing_from_climatology",
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88
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"boundary_forcing",
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89
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"bgc_boundary_forcing_from_climatology",
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90
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],
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91
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)
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92
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+
def test_dask_vs_no_dask(forcing_fixture, request, tmp_path, use_dask):
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93
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+
"""Test comparing the forcing created with and without Dask on same platform."""
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94
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+
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95
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if not use_dask:
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96
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pytest.skip("Test only runs when --use_dask is specified")
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97
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+
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98
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# Get the forcing with Dask
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99
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forcing_with_dask = request.getfixturevalue(forcing_fixture)
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100
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+
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101
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filepath = tmp_path / "test.yaml"
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forcing_with_dask.to_yaml(filepath)
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103
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104
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# Get the forcing without Dask
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105
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forcing_without_dask = type(forcing_with_dask).from_yaml(filepath, use_dask=False)
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106
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+
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107
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# Compare the two datasets using assert_equal (only within the same platform)
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xr.testing.assert_equal(forcing_with_dask.ds, forcing_without_dask.ds)
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