roms-tools 2.0.0__py3-none-any.whl → 2.2.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (57) hide show
  1. roms_tools/__init__.py +2 -1
  2. roms_tools/setup/boundary_forcing.py +22 -32
  3. roms_tools/setup/datasets.py +19 -21
  4. roms_tools/setup/grid.py +253 -139
  5. roms_tools/setup/initial_conditions.py +29 -6
  6. roms_tools/setup/mask.py +50 -4
  7. roms_tools/setup/nesting.py +575 -0
  8. roms_tools/setup/plot.py +214 -55
  9. roms_tools/setup/river_forcing.py +125 -29
  10. roms_tools/setup/surface_forcing.py +33 -12
  11. roms_tools/setup/tides.py +31 -6
  12. roms_tools/setup/topography.py +168 -35
  13. roms_tools/setup/utils.py +137 -21
  14. roms_tools/tests/test_setup/test_boundary_forcing.py +7 -5
  15. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/.zmetadata +2 -3
  16. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_tracer/.zattrs +1 -2
  17. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/tracer_name/.zarray +1 -1
  18. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/tracer_name/0 +0 -0
  19. roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/.zmetadata +5 -6
  20. roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_tracer/.zarray +2 -2
  21. roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_tracer/.zattrs +1 -2
  22. roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/river_tracer/0.0.0 +0 -0
  23. roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/tracer_name/.zarray +2 -2
  24. roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/tracer_name/0 +0 -0
  25. roms_tools/tests/test_setup/test_datasets.py +2 -2
  26. roms_tools/tests/test_setup/test_initial_conditions.py +6 -6
  27. roms_tools/tests/test_setup/test_nesting.py +489 -0
  28. roms_tools/tests/test_setup/test_river_forcing.py +50 -13
  29. roms_tools/tests/test_setup/test_surface_forcing.py +9 -8
  30. roms_tools/tests/test_setup/test_tides.py +5 -5
  31. roms_tools/tests/test_setup/test_validation.py +2 -2
  32. {roms_tools-2.0.0.dist-info → roms_tools-2.2.0.dist-info}/METADATA +9 -5
  33. {roms_tools-2.0.0.dist-info → roms_tools-2.2.0.dist-info}/RECORD +54 -53
  34. {roms_tools-2.0.0.dist-info → roms_tools-2.2.0.dist-info}/WHEEL +1 -1
  35. roms_tools/_version.py +0 -2
  36. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_tracer/0.0.0 +0 -0
  37. roms_tools/tests/test_setup/test_data/river_forcing.zarr/tracer_name/0 +0 -0
  38. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/.zattrs +0 -0
  39. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/.zgroup +0 -0
  40. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/abs_time/.zarray +0 -0
  41. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/abs_time/.zattrs +0 -0
  42. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/abs_time/0 +0 -0
  43. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/month/.zarray +0 -0
  44. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/month/.zattrs +0 -0
  45. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/month/0 +0 -0
  46. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_name/.zarray +0 -0
  47. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_name/.zattrs +0 -0
  48. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_name/0 +0 -0
  49. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_time/.zarray +0 -0
  50. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_time/.zattrs +0 -0
  51. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_time/0 +0 -0
  52. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_volume/.zarray +0 -0
  53. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_volume/.zattrs +0 -0
  54. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/river_volume/0.0 +0 -0
  55. /roms_tools/tests/test_setup/test_data/{river_forcing.zarr → river_forcing_with_bgc.zarr}/tracer_name/.zattrs +0 -0
  56. {roms_tools-2.0.0.dist-info → roms_tools-2.2.0.dist-info}/LICENSE +0 -0
  57. {roms_tools-2.0.0.dist-info → roms_tools-2.2.0.dist-info}/top_level.txt +0 -0
@@ -67,7 +67,7 @@ def grid_that_straddles_180_degree_meridian():
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  )
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  def test_successful_initialization_with_global_data(grid_fixture, request, use_dask):
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- fname = download_test_data("TPXO_global_test_data.nc")
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+ fname = Path(download_test_data("TPXO_global_test_data.nc"))
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  grid = request.getfixturevalue(grid_fixture)
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@@ -94,7 +94,7 @@ def test_successful_initialization_with_regional_data(
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  grid_that_lies_within_bounds_of_regional_tpxo_data, use_dask
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  ):
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- fname = download_test_data("TPXO_regional_test_data.nc")
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+ fname = Path(download_test_data("TPXO_regional_test_data.nc"))
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  tidal_forcing = TidalForcing(
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  grid=grid_that_lies_within_bounds_of_regional_tpxo_data,
@@ -122,7 +122,7 @@ def test_unsuccessful_initialization_with_regional_data_due_to_nans(
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  grid_that_is_out_of_bounds_of_regional_tpxo_data, use_dask
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  ):
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- fname = download_test_data("TPXO_regional_test_data.nc")
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+ fname = Path(download_test_data("TPXO_regional_test_data.nc"))
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  with pytest.raises(ValueError, match="NaN values found"):
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  TidalForcing(
@@ -141,7 +141,7 @@ def test_unsuccessful_initialization_with_regional_data_due_to_no_overlap(
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  grid_fixture, request, use_dask
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  ):
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- fname = download_test_data("TPXO_regional_test_data.nc")
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+ fname = Path(download_test_data("TPXO_regional_test_data.nc"))
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  grid = request.getfixturevalue(grid_fixture)
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@@ -158,7 +158,7 @@ def test_unsuccessful_initialization_with_regional_data_due_to_no_overlap(
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  def test_insufficient_number_of_consituents(grid_that_straddles_dateline, use_dask):
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- fname = download_test_data("TPXO_global_test_data.nc")
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+ fname = Path(download_test_data("TPXO_global_test_data.nc"))
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  with pytest.raises(ValueError, match="The dataset contains fewer"):
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  TidalForcing(
@@ -23,7 +23,7 @@ def _get_fname(name):
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  "bgc_surface_forcing_from_climatology",
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  "boundary_forcing",
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  "bgc_boundary_forcing_from_climatology",
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- "river_forcing",
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+ "river_forcing_with_bgc",
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  "river_forcing_no_climatology",
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  ],
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  )
@@ -62,7 +62,7 @@ def test_save_results(forcing_fixture, request):
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  "bgc_surface_forcing_from_climatology",
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  "boundary_forcing",
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  "bgc_boundary_forcing_from_climatology",
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- "river_forcing",
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+ "river_forcing_with_bgc",
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  "river_forcing_no_climatology",
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  ],
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  )
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.1
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+ Metadata-Version: 2.2
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  Name: roms-tools
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- Version: 2.0.0
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+ Version: 2.2.0
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  Summary: Tools for running and analysing UCLA-ROMS simulations
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  Author-email: Nora Loose <nora.loose@gmail.com>, Thomas Nicholas <tom@cworthy.org>
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  License: Apache-2
@@ -43,12 +43,16 @@ Requires-Dist: dask[diagnostics]; extra == "dask"
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  ![Run Tests](https://github.com/CWorthy-ocean/roms-tools/actions/workflows/tests.yaml/badge.svg)
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  ![Supported Python Versions](https://img.shields.io/pypi/pyversions/roms-tools)
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+ > [!Warning]
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+ > **This project is still in an early phase of development.**
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+ >
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+ > The [python API](https://roms-tools.readthedocs.io/en/latest/api.html) is not yet stable.
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+ > Therefore whilst you are welcome to try out using the package, we cannot yet guarantee backwards compatibility.
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+ > We expect to reach a more stable version in Q1 2025.
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  ## Overview
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- A suite of python tools for setting up a [ROMS](https://github.com/CESR-lab/ucla-roms) simulation.
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-
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- <mark>**DISCLAIMER**: This project is **ALPHA** and will be **EXPERIMENTAL** at least throughout 2024. We do not recommend to use this software before this ALPHA development and test phase is completed.</mark>
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+ A suite of Python tools for setting up a [ROMS](https://github.com/CESR-lab/ucla-roms) simulation.
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  ## Installation
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@@ -1,38 +1,39 @@
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  ci/environment.yml,sha256=bwK5Lz4j44gY2ee2Edn3ftXnfvYbRUVvFXVJH7T-oro,198
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- roms_tools/__init__.py,sha256=aowiA9sxDuaRAL2cFUE_qeFMtBCzZqh29ySu8kXH8VE,786
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- roms_tools/_version.py,sha256=iHtfiu6vmr1_ujVEjx71742Zj8nV9aTDSvNnKJZXnJQ,72
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+ roms_tools/__init__.py,sha256=UdCkky5JiiUlqPlG0MwQdhm6uxsY0bkDuaxi4xOB3Ls,846
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  roms_tools/utils.py,sha256=kMlVbaDcokPBqXN0307Dwt10Z8-qMcvbRLiDMX8fUpk,12230
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  roms_tools/setup/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- roms_tools/setup/boundary_forcing.py,sha256=_PlJbCqPXd3wmwZYWbOfbT1ElwAynQiqbmABnYyjaQs,43185
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- roms_tools/setup/datasets.py,sha256=rT3k3_oWmmHbxFwwd207yYwr__VXCKoNVa3bGIggY0c,85970
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+ roms_tools/setup/boundary_forcing.py,sha256=VocsvG3g9hQxzYO9gdy2bxZAaJc9oQlT7hpurcAi71Y,43067
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+ roms_tools/setup/datasets.py,sha256=-SI5EAwgGzZ8ChM1YKU9lNi-M4tRRqG5RefEyHZcQyQ,86167
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  roms_tools/setup/download.py,sha256=TgDC3TdE_njFGbPYJprAN8J1nYeOWFzavQhUfOGwAYk,5927
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  roms_tools/setup/fill.py,sha256=YQes_9uADZ-XZ6dBqXyvG7OAp7UrWhX-p3pR1gD6Od4,11120
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- roms_tools/setup/grid.py,sha256=UbbCgX-oJnWlnnLI_b0WDF3en5OyGnJYSKYlC_KCLh0,47862
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- roms_tools/setup/mask.py,sha256=jNon8Jr7EK04ObXc5gVLpiss0qYf24i5qmPPB3VAgCg,1851
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- roms_tools/setup/plot.py,sha256=h1-xqT7Il0ldFaj5b8lgpTO6ZRFNIARWWKGfftmz6Ok,8274
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+ roms_tools/setup/mask.py,sha256=IK2SrVnMJwZjE4jNFtzMQhp1c5c8SUO45OIpCIrNSis,3413
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+ roms_tools/setup/nesting.py,sha256=CB9bGizmNaQ74niARyRf-p0lY7c3CPhXTfdenmbIPOQ,21013
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+ roms_tools/setup/plot.py,sha256=Qs-JgHXQGfHcMg2cfn4TMYeDuJh2dMUgMMrndHr_jH4,12866
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- roms_tools/setup/river_forcing.py,sha256=Y_ccRqf55lwlm_INTY4cSaMbOfdMsnzxvMZGxQIrGp4,23506
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- roms_tools/setup/surface_forcing.py,sha256=9eZJbAaJ6w5KNJ_npj0JUJ0jLIGNEdvwnvmOREr1x48,20453
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- roms_tools/setup/tides.py,sha256=BSm1PFPqyYEaNododCmmSVWn46gAvdf93rjiqhom7Eo,27205
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- roms_tools/setup/topography.py,sha256=Ys6VKWcPuSFZMHJOnwOA7q5J7WagzyyKRiaq2mLxkTw,9304
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- roms_tools/setup/utils.py,sha256=ES_Zr2zXsDko568Ybg6Q6I_rN2FmZ7YKXKDSoRz-EqI,42565
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+ roms_tools/setup/tides.py,sha256=EgsPsLY70ERB6q2w1DClRQZvSbX-i_Ypume01Ub_EYU,28257
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+ roms_tools/setup/utils.py,sha256=1WzeRF8hf-00cnh2M73nsyvMQxDfHqXF2AMI947iyDk,46494
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  roms_tools/setup/vertical_coordinate.py,sha256=yw3L_ONELAZfOHwNvcyQaJ0Vqir05FRzFBd601eTLUM,2689
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- roms_tools/tests/test_setup/test_tides.py,sha256=7mOd1uVSTll3nJxAVGk6jqPHXbSdZm32GTOd4Fjcp70,8547
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- roms_tools/tests/test_setup/test_validation.py,sha256=AplhIWWOnLAzHTaqw-7QJ81ReCRcE9la9CujRNKSPR4,2276
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@@ -942,33 +943,9 @@ roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatolo
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- roms_tools/tests/test_setup/test_data/river_forcing.zarr/.zmetadata,sha256=dkR8vz1wlbSTBeHyw_PXExlSxz2okjP5qkPjQB1f4tc,5508
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- roms_tools/tests/test_setup/test_data/river_forcing.zarr/abs_time/.zarray,sha256=bRSAng1vaRGTtFKNWhv1GcxwVKYhRsJnjbtncEbdWNA,314
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- roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_name/.zarray,sha256=IiztAgS5VBT0bsRnDObags8I7F_tyQbMajEszHXfHb8,364
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- roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_name/.zattrs,sha256=EPrut8rW6fC_MGEIOeqFacMyRlxf36MZsFCgP-nZ9d4,84
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- roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_tracer/.zarray,sha256=FhMtex22BEqELx1PrYC-h8uNnf_7BYEFyb2WetNGvEo,359
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+ roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/.zmetadata,sha256=QZ9UetAm4n82AY8YmRT1KX5RtGBjf6XrwKwohjziSOM,4688
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@@ -979,14 +956,38 @@ roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_ti
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+ roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_tracer/.zattrs,sha256=o8k0oep_jy_IBnSN5uhlY8-xASorsBQUvI6U6sj-iek,187
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+ roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/.zmetadata,sha256=R3C8Umqw9q3a5kho5M5bj9HJN-dxVk2lIclC5WczJnE,5448
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+ roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/river_time/.zattrs,sha256=_mr3WpUrqvQh_z8OkdijrEoCwLj47Oightno_JgPwtY,172
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+ roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/river_tracer/.zarray,sha256=4Isc0Ety5rIupAzavr-EG8fY2C9P4Jxyp_-2NYEBUKQ,361
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+ roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/river_tracer/0.0.0,sha256=xo6kYtQViGmUufHX-8RirKlGjxq11f6f7QN7sEGGpLM,160
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+ roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/river_volume/.zarray,sha256=0EIULiiBUSrg48SznfckxE_SZYfnkktKoXzo6o51Gwk,337
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+ roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/river_volume/.zattrs,sha256=xddPI1cBVtjZXwnxDy2tg8Or2Ie7uvcM9OEJKc7G9sY,183
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+ roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/tracer_name/.zattrs,sha256=wN1vEaPGU1JcLCImGENU-e6Ix7G1mu-sw3P3THVQZ7A,87
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+ roms_tools/tests/test_setup/test_data/river_forcing_with_bgc.zarr/tracer_name/0,sha256=Ly1aLvTbSQJa2zVp1IzT3eIng1fPC9b2sINiQHgjoPM,302
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992
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@@ -1047,8 +1048,8 @@ roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Im/0.0.0,sha256=60jWZ
1047
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  roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Re/.zarray,sha256=2P8kKjSgdw5-3udU-vGJ3bzhNuRn7fZmWN811qBJn34,357
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  roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Re/.zattrs,sha256=2z7WUPvCT9VfFs8VCBltFHLWgaGj1jcw3yZ4n0viLRg,197
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1050
- roms_tools-2.0.0.dist-info/LICENSE,sha256=yiff76E4xRioW2bHhlPpyYpstmePQBx2bF8HhgQhSsg,11318
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- roms_tools-2.0.0.dist-info/METADATA,sha256=hOKvdF6xhycBhrNj147nzHE7d0dO3kxskao1Z4Uisu8,4117
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- roms_tools-2.0.0.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
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- roms_tools-2.0.0.dist-info/top_level.txt,sha256=aAf4T4nYQSkay5iKJ9kmTjlDgd4ETdp9OSlB4sJdt8Y,19
1054
- roms_tools-2.0.0.dist-info/RECORD,,
1051
+ roms_tools-2.2.0.dist-info/LICENSE,sha256=yiff76E4xRioW2bHhlPpyYpstmePQBx2bF8HhgQhSsg,11318
1052
+ roms_tools-2.2.0.dist-info/METADATA,sha256=ez12LSQgsVdNz-ujYb7B26bIgVYhDi35_ZJRjPYEpEI,4244
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+ roms_tools-2.2.0.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
1054
+ roms_tools-2.2.0.dist-info/top_level.txt,sha256=aAf4T4nYQSkay5iKJ9kmTjlDgd4ETdp9OSlB4sJdt8Y,19
1055
+ roms_tools-2.2.0.dist-info/RECORD,,
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: setuptools (75.6.0)
2
+ Generator: setuptools (75.8.0)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
roms_tools/_version.py DELETED
@@ -1,2 +0,0 @@
1
- # Do not change! Do not track in version control!
2
- __version__ = "2.0.0"