roms-tools 1.6.2__py3-none-any.whl → 2.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (283) hide show
  1. ci/environment.yml +1 -1
  2. roms_tools/__init__.py +1 -0
  3. roms_tools/_version.py +1 -1
  4. roms_tools/setup/boundary_forcing.py +266 -256
  5. roms_tools/setup/datasets.py +986 -231
  6. roms_tools/setup/download.py +41 -15
  7. roms_tools/setup/grid.py +561 -512
  8. roms_tools/setup/initial_conditions.py +162 -106
  9. roms_tools/setup/mask.py +69 -0
  10. roms_tools/setup/plot.py +81 -23
  11. roms_tools/setup/regrid.py +4 -2
  12. roms_tools/setup/river_forcing.py +589 -0
  13. roms_tools/setup/surface_forcing.py +21 -130
  14. roms_tools/setup/tides.py +15 -79
  15. roms_tools/setup/topography.py +92 -128
  16. roms_tools/setup/utils.py +307 -25
  17. roms_tools/setup/vertical_coordinate.py +5 -16
  18. roms_tools/tests/test_setup/test_boundary_forcing.py +10 -7
  19. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zattrs +1 -1
  20. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zmetadata +157 -130
  21. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/.zattrs +1 -1
  22. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_north/.zattrs +1 -1
  23. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_south/.zattrs +1 -1
  24. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/.zattrs +1 -1
  25. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_east/.zattrs +1 -1
  26. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_north/.zattrs +1 -1
  27. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_south/.zattrs +1 -1
  28. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/.zattrs +1 -1
  29. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_east/.zattrs +1 -1
  30. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_north/.zattrs +1 -1
  31. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_south/.zattrs +1 -1
  32. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/.zattrs +1 -1
  33. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_east/.zattrs +1 -1
  34. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_north/.zattrs +1 -1
  35. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_south/.zattrs +1 -1
  36. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/.zattrs +1 -1
  37. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_east/.zattrs +1 -1
  38. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_north/.zattrs +1 -1
  39. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_south/.zattrs +1 -1
  40. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/.zattrs +1 -1
  41. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_east/.zattrs +1 -1
  42. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_north/.zattrs +1 -1
  43. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_south/.zattrs +1 -1
  44. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/.zattrs +1 -1
  45. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_east/.zattrs +1 -1
  46. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_north/.zattrs +1 -1
  47. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_south/.zattrs +1 -1
  48. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/.zattrs +1 -1
  49. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_east/.zattrs +1 -1
  50. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_north/.zattrs +1 -1
  51. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_south/.zattrs +1 -1
  52. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/.zattrs +1 -1
  53. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_east/.zattrs +1 -1
  54. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_north/.zattrs +1 -1
  55. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_south/.zattrs +1 -1
  56. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/.zattrs +1 -1
  57. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_east/.zattrs +1 -1
  58. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_north/.zattrs +1 -1
  59. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_south/.zattrs +1 -1
  60. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/.zattrs +1 -1
  61. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_east/.zattrs +1 -1
  62. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_north/.zattrs +1 -1
  63. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_south/.zattrs +1 -1
  64. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/.zattrs +1 -1
  65. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_east/.zattrs +1 -1
  66. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_north/.zattrs +1 -1
  67. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_south/.zattrs +1 -1
  68. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/.zattrs +1 -1
  69. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_east/.zattrs +1 -1
  70. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_north/.zattrs +1 -1
  71. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_south/.zattrs +1 -1
  72. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/.zattrs +1 -1
  73. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_east/.zattrs +1 -1
  74. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_north/.zattrs +1 -1
  75. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_south/.zattrs +1 -1
  76. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/.zattrs +1 -1
  77. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_east/.zattrs +1 -1
  78. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_north/.zattrs +1 -1
  79. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_south/.zattrs +1 -1
  80. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/.zattrs +1 -1
  81. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_east/.zattrs +1 -1
  82. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_north/.zattrs +1 -1
  83. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_south/.zattrs +1 -1
  84. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/.zattrs +1 -1
  85. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_east/.zattrs +1 -1
  86. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_north/.zattrs +1 -1
  87. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_south/.zattrs +1 -1
  88. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/.zattrs +1 -1
  89. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/abs_time/.zattrs +1 -0
  90. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/bry_time/.zattrs +1 -1
  91. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_east/.zattrs +1 -1
  92. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_north/.zattrs +1 -1
  93. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_south/.zattrs +1 -1
  94. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/.zattrs +1 -1
  95. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_east/.zattrs +1 -1
  96. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_north/.zattrs +1 -1
  97. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_south/.zattrs +1 -1
  98. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/.zattrs +1 -1
  99. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_east/.zattrs +1 -1
  100. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_north/.zattrs +1 -1
  101. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_south/.zattrs +1 -1
  102. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/.zattrs +1 -1
  103. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_east/.zattrs +1 -1
  104. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_north/.zattrs +1 -1
  105. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_south/.zattrs +1 -1
  106. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/.zattrs +1 -1
  107. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_east/.zattrs +1 -1
  108. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_north/.zattrs +1 -1
  109. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_south/.zattrs +1 -1
  110. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/.zattrs +1 -1
  111. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_east/.zattrs +1 -1
  112. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_north/.zattrs +1 -1
  113. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_south/.zattrs +1 -1
  114. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/.zattrs +1 -1
  115. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_east/.zattrs +1 -1
  116. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_north/.zattrs +1 -1
  117. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_south/.zattrs +1 -1
  118. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/.zattrs +1 -1
  119. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_east/.zattrs +1 -1
  120. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_north/.zattrs +1 -1
  121. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_south/.zattrs +1 -1
  122. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_west/.zattrs +1 -1
  123. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_east/.zattrs +1 -1
  124. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_north/.zattrs +1 -1
  125. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_south/.zattrs +1 -1
  126. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/.zattrs +1 -1
  127. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/month/.zarray +20 -0
  128. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/month/.zattrs +6 -0
  129. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/month/0 +0 -0
  130. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_east/.zattrs +1 -1
  131. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_north/.zattrs +1 -1
  132. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_south/.zattrs +1 -1
  133. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_west/.zattrs +1 -1
  134. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_east/.zattrs +1 -1
  135. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_north/.zattrs +1 -1
  136. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_south/.zattrs +1 -1
  137. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_west/.zattrs +1 -1
  138. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_east/.zattrs +1 -1
  139. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_north/.zattrs +1 -1
  140. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_south/.zattrs +1 -1
  141. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_west/.zattrs +1 -1
  142. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_east/.zattrs +1 -1
  143. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_north/.zattrs +1 -1
  144. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_south/.zattrs +1 -1
  145. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_west/.zattrs +1 -1
  146. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_east/.zattrs +1 -1
  147. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_north/.zattrs +1 -1
  148. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_south/.zattrs +1 -1
  149. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_west/.zattrs +1 -1
  150. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_east/.zattrs +1 -1
  151. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_north/.zattrs +1 -1
  152. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_south/.zattrs +1 -1
  153. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_west/.zattrs +1 -1
  154. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/.zattrs +1 -1
  155. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/.zmetadata +39 -12
  156. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/abs_time/.zattrs +1 -0
  157. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/dust/.zattrs +1 -1
  158. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/dust_time/.zattrs +1 -1
  159. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/iron/.zattrs +1 -1
  160. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/iron_time/.zattrs +1 -1
  161. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/month/.zarray +20 -0
  162. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/month/.zattrs +6 -0
  163. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/month/0 +0 -0
  164. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/nhy/.zattrs +1 -1
  165. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/nhy_time/.zattrs +1 -1
  166. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/nox/.zattrs +1 -1
  167. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/nox_time/.zattrs +1 -1
  168. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/pco2_air/.zattrs +1 -1
  169. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/pco2_air_alt/.zattrs +1 -1
  170. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/pco2_time/.zattrs +1 -1
  171. roms_tools/tests/test_setup/test_data/grid.zarr/.zattrs +0 -1
  172. roms_tools/tests/test_setup/test_data/grid.zarr/.zmetadata +56 -201
  173. roms_tools/tests/test_setup/test_data/grid.zarr/Cs_r/.zattrs +1 -1
  174. roms_tools/tests/test_setup/test_data/grid.zarr/Cs_w/.zattrs +1 -1
  175. roms_tools/tests/test_setup/test_data/grid.zarr/{interface_depth_rho → sigma_r}/.zarray +2 -6
  176. roms_tools/tests/test_setup/test_data/grid.zarr/sigma_r/.zattrs +7 -0
  177. roms_tools/tests/test_setup/test_data/grid.zarr/sigma_r/0 +0 -0
  178. roms_tools/tests/test_setup/test_data/grid.zarr/{interface_depth_u → sigma_w}/.zarray +2 -6
  179. roms_tools/tests/test_setup/test_data/grid.zarr/sigma_w/.zattrs +7 -0
  180. roms_tools/tests/test_setup/test_data/grid.zarr/sigma_w/0 +0 -0
  181. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/.zattrs +1 -2
  182. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/.zmetadata +58 -203
  183. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/Cs_r/.zattrs +1 -1
  184. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/Cs_w/.zattrs +1 -1
  185. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/h/.zattrs +1 -1
  186. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/h/0.0 +0 -0
  187. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/mask_coarse/0.0 +0 -0
  188. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/mask_rho/0.0 +0 -0
  189. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/mask_u/0.0 +0 -0
  190. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/mask_v/0.0 +0 -0
  191. roms_tools/tests/test_setup/test_data/{grid.zarr/interface_depth_v → grid_that_straddles_dateline.zarr/sigma_r}/.zarray +2 -6
  192. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/sigma_r/.zattrs +7 -0
  193. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/sigma_r/0 +0 -0
  194. roms_tools/tests/test_setup/test_data/{grid.zarr/layer_depth_rho → grid_that_straddles_dateline.zarr/sigma_w}/.zarray +2 -6
  195. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/sigma_w/.zattrs +7 -0
  196. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/sigma_w/0 +0 -0
  197. roms_tools/tests/test_setup/test_data/river_forcing.zarr/.zattrs +3 -0
  198. roms_tools/tests/test_setup/test_data/river_forcing.zarr/.zgroup +3 -0
  199. roms_tools/tests/test_setup/test_data/river_forcing.zarr/.zmetadata +214 -0
  200. roms_tools/tests/test_setup/test_data/river_forcing.zarr/abs_time/.zarray +20 -0
  201. roms_tools/tests/test_setup/test_data/river_forcing.zarr/abs_time/.zattrs +8 -0
  202. roms_tools/tests/test_setup/test_data/river_forcing.zarr/abs_time/0 +0 -0
  203. roms_tools/tests/test_setup/test_data/river_forcing.zarr/month/.zarray +20 -0
  204. roms_tools/tests/test_setup/test_data/river_forcing.zarr/month/.zattrs +6 -0
  205. roms_tools/tests/test_setup/test_data/river_forcing.zarr/month/0 +0 -0
  206. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_name/.zarray +24 -0
  207. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_name/.zattrs +6 -0
  208. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_name/0 +0 -0
  209. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_time/.zarray +20 -0
  210. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_time/.zattrs +8 -0
  211. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_time/0 +0 -0
  212. roms_tools/tests/test_setup/test_data/{grid.zarr/layer_depth_v → river_forcing.zarr/river_tracer}/.zarray +4 -4
  213. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_tracer/.zattrs +10 -0
  214. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_tracer/0.0.0 +0 -0
  215. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_volume/.zarray +22 -0
  216. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_volume/.zattrs +9 -0
  217. roms_tools/tests/test_setup/test_data/river_forcing.zarr/river_volume/0.0 +0 -0
  218. roms_tools/tests/test_setup/test_data/{grid.zarr/layer_depth_u → river_forcing.zarr/tracer_name}/.zarray +2 -6
  219. roms_tools/tests/test_setup/test_data/river_forcing.zarr/tracer_name/.zattrs +6 -0
  220. roms_tools/tests/test_setup/test_data/river_forcing.zarr/tracer_name/0 +0 -0
  221. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/.zattrs +1 -0
  222. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/.zgroup +3 -0
  223. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/.zmetadata +185 -0
  224. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/abs_time/.zarray +20 -0
  225. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/abs_time/.zattrs +8 -0
  226. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/abs_time/0 +0 -0
  227. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_name/.zarray +24 -0
  228. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_name/.zattrs +6 -0
  229. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_name/0 +0 -0
  230. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_time/.zarray +20 -0
  231. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_time/.zattrs +7 -0
  232. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_time/0 +0 -0
  233. roms_tools/tests/test_setup/test_data/{grid_that_straddles_dateline.zarr/interface_depth_v → river_forcing_no_climatology.zarr/river_tracer}/.zarray +4 -4
  234. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_tracer/.zattrs +10 -0
  235. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_tracer/0.0.0 +0 -0
  236. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_volume/.zarray +22 -0
  237. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_volume/.zattrs +9 -0
  238. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/river_volume/0.0 +0 -0
  239. roms_tools/tests/test_setup/test_data/{grid_that_straddles_dateline.zarr/interface_depth_u → river_forcing_no_climatology.zarr/tracer_name}/.zarray +2 -6
  240. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/tracer_name/.zattrs +6 -0
  241. roms_tools/tests/test_setup/test_data/river_forcing_no_climatology.zarr/tracer_name/0 +0 -0
  242. roms_tools/tests/test_setup/test_grid.py +110 -12
  243. roms_tools/tests/test_setup/test_initial_conditions.py +2 -3
  244. roms_tools/tests/test_setup/test_river_forcing.py +367 -0
  245. roms_tools/tests/test_setup/test_surface_forcing.py +2 -24
  246. roms_tools/tests/test_setup/test_tides.py +2 -3
  247. roms_tools/tests/test_setup/test_topography.py +106 -1
  248. roms_tools/tests/test_setup/test_validation.py +4 -0
  249. roms_tools/utils.py +12 -10
  250. {roms_tools-1.6.2.dist-info → roms_tools-2.0.0.dist-info}/LICENSE +1 -1
  251. {roms_tools-1.6.2.dist-info → roms_tools-2.0.0.dist-info}/METADATA +6 -5
  252. {roms_tools-1.6.2.dist-info → roms_tools-2.0.0.dist-info}/RECORD +254 -225
  253. {roms_tools-1.6.2.dist-info → roms_tools-2.0.0.dist-info}/WHEEL +1 -1
  254. roms_tools/tests/test_setup/test_data/grid.zarr/interface_depth_rho/.zattrs +0 -9
  255. roms_tools/tests/test_setup/test_data/grid.zarr/interface_depth_rho/0.0.0 +0 -0
  256. roms_tools/tests/test_setup/test_data/grid.zarr/interface_depth_u/.zattrs +0 -9
  257. roms_tools/tests/test_setup/test_data/grid.zarr/interface_depth_u/0.0.0 +0 -0
  258. roms_tools/tests/test_setup/test_data/grid.zarr/interface_depth_v/.zattrs +0 -9
  259. roms_tools/tests/test_setup/test_data/grid.zarr/interface_depth_v/0.0.0 +0 -0
  260. roms_tools/tests/test_setup/test_data/grid.zarr/layer_depth_rho/.zattrs +0 -9
  261. roms_tools/tests/test_setup/test_data/grid.zarr/layer_depth_rho/0.0.0 +0 -0
  262. roms_tools/tests/test_setup/test_data/grid.zarr/layer_depth_u/.zattrs +0 -9
  263. roms_tools/tests/test_setup/test_data/grid.zarr/layer_depth_u/0.0.0 +0 -0
  264. roms_tools/tests/test_setup/test_data/grid.zarr/layer_depth_v/.zattrs +0 -9
  265. roms_tools/tests/test_setup/test_data/grid.zarr/layer_depth_v/0.0.0 +0 -0
  266. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/interface_depth_rho/.zarray +0 -24
  267. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/interface_depth_rho/.zattrs +0 -9
  268. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/interface_depth_rho/0.0.0 +0 -0
  269. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/interface_depth_u/.zattrs +0 -9
  270. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/interface_depth_u/0.0.0 +0 -0
  271. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/interface_depth_v/.zattrs +0 -9
  272. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/interface_depth_v/0.0.0 +0 -0
  273. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_rho/.zarray +0 -24
  274. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_rho/.zattrs +0 -9
  275. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_rho/0.0.0 +0 -0
  276. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_u/.zarray +0 -24
  277. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_u/.zattrs +0 -9
  278. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_u/0.0.0 +0 -0
  279. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_v/.zarray +0 -24
  280. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_v/.zattrs +0 -9
  281. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/layer_depth_v/0.0.0 +0 -0
  282. roms_tools/tests/test_setup/test_vertical_coordinate.py +0 -91
  283. {roms_tools-1.6.2.dist-info → roms_tools-2.0.0.dist-info}/top_level.txt +0 -0
@@ -1,5 +1,4 @@
1
1
  import pooch
2
- import xarray as xr
3
2
 
4
3
  # Create a Pooch object to manage the global topography data
5
4
  topo_data = pooch.create(
@@ -19,11 +18,20 @@ correction_data = pooch.create(
19
18
  base_url="https://github.com/CWorthy-ocean/roms-tools-data/raw/main/",
20
19
  # The registry specifies the files that can be fetched
21
20
  registry={
22
- "etopo5.nc": "sha256:23600e422d59bbf7c3666090166a0d468c8ee16092f4f14e32c4e928fbcd627b",
23
21
  "SSR_correction.nc": "sha256:a170c1698e6cc2765b3f0bb51a18c6a979bc796ac3a4c014585aeede1f1f8ea0",
24
22
  },
25
23
  )
26
24
 
25
+ # Create a Pooch object to manage the global topography data
26
+ river_data = pooch.create(
27
+ # Use the default cache folder for the operating system
28
+ path=pooch.os_cache("roms-tools"),
29
+ base_url="https://github.com/CWorthy-ocean/roms-tools-data/raw/main/",
30
+ # The registry specifies the files that can be fetched
31
+ registry={
32
+ "dai_trenberth_may2019.nc": "sha256:793849e6aa60d1f6bdb480c345515fb2453d903c0a30599241b3d752f53715ab",
33
+ },
34
+ )
27
35
  # Create a Pooch object to manage the test data
28
36
  pup_test_data = pooch.create(
29
37
  # Use the default cache folder for the operating system
@@ -40,6 +48,7 @@ pup_test_data = pooch.create(
40
48
  "ERA5_global_test_data.nc": "8ed177ab64c02caf509b9fb121cf6713f286cc603b1f302f15f3f4eb0c21dc4f",
41
49
  "TPXO_global_test_data.nc": "457bfe87a7b247ec6e04e3c7d3e741ccf223020c41593f8ae33a14f2b5255e60",
42
50
  "TPXO_regional_test_data.nc": "11739245e2286d9c9d342dce5221e6435d2072b50028bef2e86a30287b3b4032",
51
+ "CESM_BGC_coarse_global_clim.nc": "20806e4e99285d6de168d3236e2d9245f4e9106474b1464beaa266a73e6ef79f",
43
52
  "CESM_BGC_2012.nc": "e374d5df3c1be742d564fd26fd861c2d40af73be50a432c51d258171d5638eb6",
44
53
  "CESM_regional_test_data_one_time_slice.nc": "43b578ecc067c85f95d6b97ed7b9dc8da7846f07c95331c6ba7f4a3161036a17",
45
54
  "CESM_regional_test_data_climatology.nc": "986a200029d9478fd43e6e4a8bc43e8a8f4407554893c59b5fcc2e86fd203272",
@@ -48,33 +57,50 @@ pup_test_data = pooch.create(
48
57
  "CESM_surface_global_test_data_climatology.nc": "a072757110c6f7b716a98f867688ef4195a5966741d2f368201ac24617254e35",
49
58
  "CESM_surface_global_test_data.nc": "874106ffbc8b1b220db09df1551bbb89d22439d795b4d1e5a24ee775e9a7bf6e",
50
59
  "grid_created_with_matlab.nc": "fd537ef8159fabb18e38495ec8d44e2fa1b7fb615fcb1417dd4c0e1bb5f4e41d",
60
+ "etopo5_coarsened_and_shifted.nc": "9a5cb4b38c779d22ddb0ad069b298b9722db34ca85a89273eccca691e89e6f96",
61
+ "srtm15_coarsened.nc": "48bc8f4beecfdca9c192b13f4cbeef1455f49d8261a82563aaec5757e100dff9",
51
62
  },
52
63
  )
53
64
 
54
65
 
55
- def fetch_topo(topography_source: str) -> xr.Dataset:
56
- """Load the global topography data as an xarray Dataset.
66
+ def download_topo(filename: str) -> str:
67
+ """Download simple topography file.
57
68
 
58
69
  Parameters
59
70
  ----------
60
- topography_source : str
61
- The source of the topography data to be loaded. Available options:
62
- - "ETOPO5"
71
+ filename : str
72
+ The name of the test data file to be downloaded. Available options:
73
+ - "etopo5.nc"
63
74
 
64
75
  Returns
65
76
  -------
66
- xr.Dataset
67
- The global topography data as an xarray Dataset.
77
+ str
78
+ The path to the downloaded test data file.
79
+ """
80
+ # Fetch the file using Pooch, downloading if necessary
81
+ fname = topo_data.fetch(filename)
82
+
83
+ return fname
84
+
85
+
86
+ def download_river_data(filename: str) -> str:
87
+ """Download river data file.
88
+
89
+ Parameters
90
+ ----------
91
+ filename : str
92
+ The name of the test data file to be downloaded. Available options:
93
+ - "dai_trenberth_may2019.nc"
94
+ Returns
95
+ -------
96
+ str
97
+ The path to the downloaded test data file.
68
98
  """
69
- # Mapping from user-specified topography options to corresponding filenames in the registry
70
- topo_dict = {"ETOPO5": "etopo5.nc"}
71
99
 
72
100
  # Fetch the file using Pooch, downloading if necessary
73
- fname = topo_data.fetch(topo_dict[topography_source])
101
+ fname = river_data.fetch(filename)
74
102
 
75
- # Load the dataset using xarray and return it
76
- ds = xr.open_dataset(fname)
77
- return ds
103
+ return fname
78
104
 
79
105
 
80
106
  def download_correction_data(filename: str) -> str: