roms-tools 1.3.0__py3-none-any.whl → 1.4.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (348) hide show
  1. ci/environment.yml +1 -8
  2. roms_tools/_version.py +1 -1
  3. roms_tools/setup/boundary_forcing.py +1 -1
  4. roms_tools/setup/datasets.py +278 -105
  5. roms_tools/setup/download.py +5 -0
  6. roms_tools/setup/fill.py +266 -331
  7. roms_tools/setup/grid.py +92 -8
  8. roms_tools/setup/initial_conditions.py +10 -11
  9. roms_tools/setup/mixins.py +29 -21
  10. roms_tools/setup/surface_forcing.py +3 -5
  11. roms_tools/setup/tides.py +44 -46
  12. roms_tools/setup/topography.py +30 -4
  13. roms_tools/setup/utils.py +41 -23
  14. roms_tools/tests/test_setup/test_boundary_forcing.py +1 -1
  15. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zattrs +1 -1
  16. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zmetadata +1 -1
  17. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/0.0.0 +0 -0
  18. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_north/0.0.0 +0 -0
  19. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_south/0.0.0 +0 -0
  20. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/0.0.0 +0 -0
  21. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_east/0.0.0 +0 -0
  22. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_north/0.0.0 +0 -0
  23. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_south/0.0.0 +0 -0
  24. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/0.0.0 +0 -0
  25. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_east/0.0.0 +0 -0
  26. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_north/0.0.0 +0 -0
  27. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_south/0.0.0 +0 -0
  28. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/0.0.0 +0 -0
  29. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_east/0.0.0 +0 -0
  30. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_north/0.0.0 +0 -0
  31. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_south/0.0.0 +0 -0
  32. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/0.0.0 +0 -0
  33. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_east/0.0.0 +0 -0
  34. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_north/0.0.0 +0 -0
  35. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_south/0.0.0 +0 -0
  36. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/0.0.0 +0 -0
  37. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_east/0.0.0 +0 -0
  38. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_north/0.0.0 +0 -0
  39. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_south/0.0.0 +0 -0
  40. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/0.0.0 +0 -0
  41. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_east/0.0.0 +0 -0
  42. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_north/0.0.0 +0 -0
  43. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_south/0.0.0 +0 -0
  44. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/0.0.0 +0 -0
  45. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_east/0.0.0 +0 -0
  46. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_north/0.0.0 +0 -0
  47. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_south/0.0.0 +0 -0
  48. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/0.0.0 +0 -0
  49. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_east/0.0.0 +0 -0
  50. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_north/0.0.0 +0 -0
  51. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_south/0.0.0 +0 -0
  52. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/0.0.0 +0 -0
  53. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_east/0.0.0 +0 -0
  54. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_north/0.0.0 +0 -0
  55. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_south/0.0.0 +0 -0
  56. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/0.0.0 +0 -0
  57. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_east/0.0.0 +0 -0
  58. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_north/0.0.0 +0 -0
  59. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_south/0.0.0 +0 -0
  60. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/0.0.0 +0 -0
  61. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_east/0.0.0 +0 -0
  62. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_north/0.0.0 +0 -0
  63. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_south/0.0.0 +0 -0
  64. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/0.0.0 +0 -0
  65. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_east/0.0.0 +0 -0
  66. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_north/0.0.0 +0 -0
  67. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_south/0.0.0 +0 -0
  68. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/0.0.0 +0 -0
  69. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_east/0.0.0 +0 -0
  70. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_north/0.0.0 +0 -0
  71. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_south/0.0.0 +0 -0
  72. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/0.0.0 +0 -0
  73. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_east/0.0.0 +0 -0
  74. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_north/0.0.0 +0 -0
  75. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_south/0.0.0 +0 -0
  76. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/0.0.0 +0 -0
  77. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_east/0.0.0 +0 -0
  78. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_north/0.0.0 +0 -0
  79. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_south/0.0.0 +0 -0
  80. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/0.0.0 +0 -0
  81. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_east/0.0.0 +0 -0
  82. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_north/0.0.0 +0 -0
  83. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_south/0.0.0 +0 -0
  84. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/0.0.0 +0 -0
  85. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_east/0.0.0 +0 -0
  86. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_north/0.0.0 +0 -0
  87. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_south/0.0.0 +0 -0
  88. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/0.0.0 +0 -0
  89. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_east/0.0.0 +0 -0
  90. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_north/0.0.0 +0 -0
  91. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_south/0.0.0 +0 -0
  92. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/0.0.0 +0 -0
  93. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_east/0.0.0 +0 -0
  94. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_north/0.0.0 +0 -0
  95. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_south/0.0.0 +0 -0
  96. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/0.0.0 +0 -0
  97. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_east/0.0.0 +0 -0
  98. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_north/0.0.0 +0 -0
  99. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_south/0.0.0 +0 -0
  100. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/0.0.0 +0 -0
  101. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_east/0.0.0 +0 -0
  102. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_north/0.0.0 +0 -0
  103. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_south/0.0.0 +0 -0
  104. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/0.0.0 +0 -0
  105. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_east/0.0.0 +0 -0
  106. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_north/0.0.0 +0 -0
  107. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_south/0.0.0 +0 -0
  108. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/0.0.0 +0 -0
  109. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_east/0.0.0 +0 -0
  110. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_north/0.0.0 +0 -0
  111. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_south/0.0.0 +0 -0
  112. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/0.0.0 +0 -0
  113. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_east/0.0.0 +0 -0
  114. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_north/0.0.0 +0 -0
  115. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_south/0.0.0 +0 -0
  116. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_west/0.0.0 +0 -0
  117. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_east/0.0.0 +0 -0
  118. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_north/0.0.0 +0 -0
  119. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_south/0.0.0 +0 -0
  120. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/0.0.0 +0 -0
  121. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_east/0.0.0 +0 -0
  122. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_north/0.0.0 +0 -0
  123. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_south/0.0.0 +0 -0
  124. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_west/0.0.0 +0 -0
  125. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_east/0.0.0 +0 -0
  126. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_north/0.0.0 +0 -0
  127. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_south/0.0.0 +0 -0
  128. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_west/0.0.0 +0 -0
  129. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_east/0.0.0 +0 -0
  130. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_north/0.0.0 +0 -0
  131. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_south/0.0.0 +0 -0
  132. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_west/0.0.0 +0 -0
  133. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_east/0.0.0 +0 -0
  134. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_north/0.0.0 +0 -0
  135. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_south/0.0.0 +0 -0
  136. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_west/0.0.0 +0 -0
  137. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_east/0.0.0 +0 -0
  138. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_north/0.0.0 +0 -0
  139. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_south/0.0.0 +0 -0
  140. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_west/0.0.0 +0 -0
  141. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_east/0.0.0 +0 -0
  142. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_north/0.0.0 +0 -0
  143. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_south/0.0.0 +0 -0
  144. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_west/0.0.0 +0 -0
  145. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/.zattrs +1 -1
  146. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/.zmetadata +1 -1
  147. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/dust/0.0.0 +0 -0
  148. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/iron/0.0.0 +0 -0
  149. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/nhy/0.0.0 +0 -0
  150. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/nox/0.0.0 +0 -0
  151. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/pco2_air/0.0.0 +0 -0
  152. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/pco2_air_alt/0.0.0 +0 -0
  153. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/.zattrs +1 -1
  154. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/.zmetadata +1 -1
  155. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/dust/0.0.0 +0 -0
  156. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/iron/0.0.0 +0 -0
  157. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/nhy/0.0.0 +0 -0
  158. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/nox/0.0.0 +0 -0
  159. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/pco2_air/0.0.0 +0 -0
  160. roms_tools/tests/test_setup/test_data/bgc_surface_forcing_from_climatology.zarr/pco2_air_alt/0.0.0 +0 -0
  161. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/.zattrs +1 -1
  162. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/.zmetadata +1 -1
  163. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_east/0.0.0 +0 -0
  164. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_north/0.0.0 +0 -0
  165. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_south/0.0.0 +0 -0
  166. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_west/0.0.0 +0 -0
  167. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_east/0.0.0 +0 -0
  168. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_north/0.0.0 +0 -0
  169. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_south/0.0.0 +0 -0
  170. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_west/0.0.0 +0 -0
  171. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_east/0.0.0 +0 -0
  172. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_north/0.0.0 +0 -0
  173. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_south/0.0.0 +0 -0
  174. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_west/0.0.0 +0 -0
  175. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_east/0.0 +0 -0
  176. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_north/0.0 +0 -0
  177. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_south/0.0 +0 -0
  178. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_west/0.0 +0 -0
  179. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_east/0.0.0 +0 -0
  180. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_north/0.0.0 +0 -0
  181. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_south/0.0.0 +0 -0
  182. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_west/0.0.0 +0 -0
  183. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_east/0.0 +0 -0
  184. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_north/0.0 +0 -0
  185. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_south/0.0 +0 -0
  186. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_west/0.0 +0 -0
  187. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/zeta_east/0.0 +0 -0
  188. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/zeta_south/0.0 +0 -0
  189. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/.zattrs +1 -1
  190. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/.zmetadata +8 -8
  191. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/Tair/.zarray +1 -1
  192. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/Tair/0.0.0 +0 -0
  193. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/lwrad/.zarray +1 -1
  194. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/lwrad/0.0.0 +0 -0
  195. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/qair/.zarray +1 -1
  196. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/qair/0.0.0 +0 -0
  197. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/rain/.zarray +1 -1
  198. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/rain/0.0.0 +0 -0
  199. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/swrad/.zarray +1 -1
  200. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/swrad/0.0.0 +0 -0
  201. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/uwnd/.zarray +1 -1
  202. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/uwnd/0.0.0 +0 -0
  203. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/vwnd/.zarray +1 -1
  204. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/vwnd/0.0.0 +0 -0
  205. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/.zattrs +1 -1
  206. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/.zmetadata +8 -8
  207. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/Tair/.zarray +1 -1
  208. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/Tair/0.0.0 +0 -0
  209. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/lwrad/.zarray +1 -1
  210. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/lwrad/0.0.0 +0 -0
  211. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/qair/.zarray +1 -1
  212. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/qair/0.0.0 +0 -0
  213. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/rain/.zarray +1 -1
  214. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/rain/0.0.0 +0 -0
  215. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/swrad/.zarray +1 -1
  216. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/swrad/0.0.0 +0 -0
  217. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/uwnd/.zarray +1 -1
  218. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/uwnd/0.0.0 +0 -0
  219. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/vwnd/.zarray +1 -1
  220. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/vwnd/0.0.0 +0 -0
  221. roms_tools/tests/test_setup/test_data/grid.zarr/.zattrs +2 -2
  222. roms_tools/tests/test_setup/test_data/grid.zarr/.zmetadata +62 -2
  223. roms_tools/tests/test_setup/test_data/grid.zarr/lat_psi/.zarray +22 -0
  224. roms_tools/tests/test_setup/test_data/grid.zarr/lat_psi/.zattrs +8 -0
  225. roms_tools/tests/test_setup/test_data/grid.zarr/lat_psi/0.0 +0 -0
  226. roms_tools/tests/test_setup/test_data/grid.zarr/lat_u/0.0 +0 -0
  227. roms_tools/tests/test_setup/test_data/grid.zarr/lat_v/0.0 +0 -0
  228. roms_tools/tests/test_setup/test_data/grid.zarr/lon_psi/.zarray +22 -0
  229. roms_tools/tests/test_setup/test_data/grid.zarr/lon_psi/.zattrs +8 -0
  230. roms_tools/tests/test_setup/test_data/grid.zarr/lon_psi/0.0 +0 -0
  231. roms_tools/tests/test_setup/test_data/grid.zarr/lon_u/0.0 +0 -0
  232. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/.zattrs +2 -2
  233. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/.zmetadata +62 -2
  234. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lat_psi/.zarray +22 -0
  235. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lat_psi/.zattrs +8 -0
  236. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lat_psi/0.0 +0 -0
  237. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lat_u/0.0 +0 -0
  238. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lat_v/0.0 +0 -0
  239. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_psi/.zarray +22 -0
  240. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_psi/.zattrs +8 -0
  241. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_psi/0.0 +0 -0
  242. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_u/0.0 +0 -0
  243. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/lon_v/0.0 +0 -0
  244. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/.zattrs +1 -1
  245. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/.zmetadata +1 -1
  246. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ALK/0.0.0.0 +0 -0
  247. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ALK_ALT_CO2/0.0.0.0 +0 -0
  248. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DIC/0.0.0.0 +0 -0
  249. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DIC_ALT_CO2/0.0.0.0 +0 -0
  250. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOC/0.0.0.0 +0 -0
  251. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOCr/0.0.0.0 +0 -0
  252. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DON/0.0.0.0 +0 -0
  253. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DONr/0.0.0.0 +0 -0
  254. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOP/0.0.0.0 +0 -0
  255. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOPr/0.0.0.0 +0 -0
  256. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/Fe/0.0.0.0 +0 -0
  257. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/Lig/0.0.0.0 +0 -0
  258. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/NH4/0.0.0.0 +0 -0
  259. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/NO3/0.0.0.0 +0 -0
  260. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/O2/0.0.0.0 +0 -0
  261. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/PO4/0.0.0.0 +0 -0
  262. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/SiO3/0.0.0.0 +0 -0
  263. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatC/0.0.0.0 +0 -0
  264. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatChl/0.0.0.0 +0 -0
  265. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatFe/0.0.0.0 +0 -0
  266. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatP/0.0.0.0 +0 -0
  267. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatSi/0.0.0.0 +0 -0
  268. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazC/0.0.0.0 +0 -0
  269. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazChl/0.0.0.0 +0 -0
  270. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazFe/0.0.0.0 +0 -0
  271. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazP/0.0.0.0 +0 -0
  272. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/salt/0.0.0.0 +0 -0
  273. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spC/0.0.0.0 +0 -0
  274. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spCaCO3/0.0.0.0 +0 -0
  275. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spChl/0.0.0.0 +0 -0
  276. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spFe/0.0.0.0 +0 -0
  277. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spP/0.0.0.0 +0 -0
  278. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/temp/0.0.0.0 +0 -0
  279. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/u/0.0.0.0 +0 -0
  280. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ubar/0.0.0 +0 -0
  281. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/v/0.0.0.0 +0 -0
  282. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/vbar/0.0.0 +0 -0
  283. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/zeta/0.0.0 +0 -0
  284. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/zooC/0.0.0.0 +0 -0
  285. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/.zattrs +1 -1
  286. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/.zmetadata +8 -8
  287. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/Tair/.zarray +1 -1
  288. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/Tair/0.0.0 +0 -0
  289. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/lwrad/.zarray +1 -1
  290. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/lwrad/0.0.0 +0 -0
  291. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/qair/.zarray +1 -1
  292. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/qair/0.0.0 +0 -0
  293. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/rain/.zarray +1 -1
  294. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/rain/0.0.0 +0 -0
  295. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/swrad/.zarray +1 -1
  296. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/swrad/0.0.0 +0 -0
  297. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/uwnd/.zarray +1 -1
  298. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/uwnd/0.0.0 +0 -0
  299. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/vwnd/.zarray +1 -1
  300. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/vwnd/0.0.0 +0 -0
  301. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/.zattrs +1 -1
  302. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/.zmetadata +2 -4
  303. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/omega/.zattrs +1 -3
  304. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/pot_Im/0.0.0 +0 -0
  305. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/pot_Re/0.0.0 +0 -0
  306. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/ssh_Im/0.0.0 +0 -0
  307. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/ssh_Re/0.0.0 +0 -0
  308. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/u_Im/0.0.0 +0 -0
  309. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/u_Re/0.0.0 +0 -0
  310. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Im/0.0.0 +0 -0
  311. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Re/0.0.0 +0 -0
  312. roms_tools/tests/test_setup/test_datasets.py +280 -211
  313. roms_tools/tests/test_setup/test_fill.py +177 -0
  314. roms_tools/tests/test_setup/test_grid.py +56 -0
  315. roms_tools/tests/test_setup/test_initial_conditions.py +5 -3
  316. roms_tools/tests/test_setup/test_surface_forcing.py +4 -4
  317. roms_tools/tests/test_setup/test_tides.py +5 -2
  318. roms_tools/tests/test_setup/test_topography.py +40 -0
  319. roms_tools/tests/test_setup/test_validation.py +1 -1
  320. roms_tools/tests/test_utils.py +30 -0
  321. roms_tools/utils.py +39 -3
  322. roms_tools-1.4.1.dist-info/LICENSE +201 -0
  323. {roms_tools-1.3.0.dist-info → roms_tools-1.4.1.dist-info}/METADATA +13 -3
  324. {roms_tools-1.3.0.dist-info → roms_tools-1.4.1.dist-info}/RECORD +326 -334
  325. {roms_tools-1.3.0.dist-info → roms_tools-1.4.1.dist-info}/WHEEL +1 -1
  326. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/Tair/1.0.0 +0 -0
  327. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/lwrad/1.0.0 +0 -0
  328. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/qair/1.0.0 +0 -0
  329. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/rain/1.0.0 +0 -0
  330. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/swrad/1.0.0 +0 -0
  331. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/uwnd/1.0.0 +0 -0
  332. roms_tools/tests/test_setup/test_data/coarse_surface_forcing.zarr/vwnd/1.0.0 +0 -0
  333. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/Tair/1.0.0 +0 -0
  334. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/lwrad/1.0.0 +0 -0
  335. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/qair/1.0.0 +0 -0
  336. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/rain/1.0.0 +0 -0
  337. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/swrad/1.0.0 +0 -0
  338. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/uwnd/1.0.0 +0 -0
  339. roms_tools/tests/test_setup/test_data/corrected_surface_forcing.zarr/vwnd/1.0.0 +0 -0
  340. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/Tair/1.0.0 +0 -0
  341. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/lwrad/1.0.0 +0 -0
  342. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/qair/1.0.0 +0 -0
  343. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/rain/1.0.0 +0 -0
  344. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/swrad/1.0.0 +0 -0
  345. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/uwnd/1.0.0 +0 -0
  346. roms_tools/tests/test_setup/test_data/surface_forcing.zarr/vwnd/1.0.0 +0 -0
  347. roms_tools-1.3.0.dist-info/LICENSE +0 -674
  348. {roms_tools-1.3.0.dist-info → roms_tools-1.4.1.dist-info}/top_level.txt +0 -0
ci/environment.yml CHANGED
@@ -1,4 +1,4 @@
1
- name: romstools
1
+ name: romstools-test
2
2
  channels:
3
3
  - conda-forge
4
4
  - nodefaults
@@ -12,10 +12,3 @@ dependencies:
12
12
  - black
13
13
  - pre-commit
14
14
  - coverage
15
- # docs
16
- - sphinx
17
- - nbsphinx
18
- - sphinx-book-theme
19
- - sphinxcontrib-bibtex
20
- # for running jupyter notebooks
21
- - ipykernel
roms_tools/_version.py CHANGED
@@ -1,2 +1,2 @@
1
1
  # Do not change! Do not track in version control!
2
- __version__ = "1.3.0"
2
+ __version__ = "1.4.1"
@@ -175,7 +175,6 @@ class BoundaryForcing(ROMSToolsMixins):
175
175
  if self.source["name"] == "CESM_REGRIDDED":
176
176
 
177
177
  data = CESMBGCDataset(**data_dict)
178
- data.post_process()
179
178
  else:
180
179
  raise ValueError(
181
180
  'Only "CESM_REGRIDDED" is a valid option for source["name"] when type is "bgc".'
@@ -279,6 +278,7 @@ class BoundaryForcing(ROMSToolsMixins):
279
278
  ds["bry_time"].attrs["units"] = "days"
280
279
  ds = ds.swap_dims({"time": "bry_time"})
281
280
  ds = ds.drop_vars("time")
281
+ ds.encoding["unlimited_dims"] = "bry_time"
282
282
 
283
283
  if data.climatology:
284
284
  ds["bry_time"].attrs["cycle_length"] = 365.25