roms-tools 1.1.0__py3-none-any.whl → 1.2.0__py3-none-any.whl

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@@ -230,59 +230,48 @@ def test_initial_conditions_data_consistency_plot_save(
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  [
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  [
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  [
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- [16.84414, 16.905312, 16.967817],
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- [18.088203, 18.121834, 18.315424],
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- [18.431192, 18.496748, 18.718002],
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- [19.294329, 19.30358, 19.439777],
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+ [16.84414, 18.088203, 18.431192, 19.294329],
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+ [12.639833, 15.712767, 13.02848, 18.633307],
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+ [11.027701, 12.302642, 8.143677, 8.710737],
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+ [10.233599, 10.147332, 10.458557, 9.20282],
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  ],
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  [
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- [12.639833, 13.479691, 14.426711],
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- [15.712767, 15.920951, 16.10028],
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- [13.02848, 14.5227165, 15.05175],
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- [18.633307, 18.637077, 18.667465],
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+ [16.905312, 18.121834, 18.496748, 19.30358],
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+ [13.479691, 15.920951, 14.5227165, 18.637077],
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+ [11.650267, 12.646921, 11.435992, 11.25943],
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+ [10.546486, 10.502733, 11.209945, 10.667074],
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  ],
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  [
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- [11.027701, 11.650267, 12.200586],
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- [12.302642, 12.646921, 13.150708],
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- [8.143677, 11.435992, 13.356925],
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- [8.710737, 11.25943, 13.111585],
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- ],
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- [
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- [10.233599, 10.546486, 10.671082],
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- [10.147331, 10.502733, 10.68275],
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- [10.458557, 11.209945, 11.377164],
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- [9.20282, 10.667074, 11.752404],
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+ [16.967817, 18.315424, 18.718002, 19.439777],
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+ [14.426711, 16.10028, 15.05175, 18.667465],
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+ [12.200586, 13.150708, 13.356925, 13.111585],
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+ [10.671082, 10.68275, 11.377164, 11.752404],
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  ],
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  ]
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  ],
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  dtype=np.float32,
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  )
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+
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  expected_salt = np.array(
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  [
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  [
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  [
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- [33.832672, 33.77759, 33.633846],
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- [32.50002, 32.48105, 32.154694],
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- [30.922323, 30.909824, 30.508572],
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- [28.337738, 28.335176, 28.067144],
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+ [33.832672, 32.50002, 30.922323, 28.337738],
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+ [34.8002, 32.43797, 34.885834, 29.237692],
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+ [34.046825, 33.892323, 34.964134, 34.975933],
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+ [35.21593, 35.224304, 35.299217, 34.25124],
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  ],
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  [
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- [34.8002, 34.691143, 34.382282],
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- [32.43797, 32.369576, 32.027843],
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- [34.885834, 34.82964, 34.775684],
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- [29.237692, 29.232145, 29.09444],
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+ [33.77759, 32.48105, 30.909824, 28.335176],
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+ [34.691143, 32.369576, 34.82964, 29.232145],
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+ [33.950684, 33.84102, 34.91892, 34.48586],
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+ [35.209476, 35.209522, 35.31244, 33.828175],
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  ],
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  [
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- [34.046825, 33.950684, 33.87148],
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- [33.892323, 33.84102, 33.69169],
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- [34.964134, 34.91892, 34.91941],
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- [34.975933, 34.48586, 32.729057],
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- ],
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- [
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- [35.21593, 35.209476, 35.20767],
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- [35.224304, 35.209522, 35.20715],
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- [35.299217, 35.31244, 35.31555],
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- [34.25124, 33.828175, 33.234303],
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+ [33.633846, 32.154694, 30.508572, 28.067144],
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+ [34.382282, 32.027843, 34.775684, 29.09444],
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+ [33.87148, 33.69169, 34.91941, 32.729057],
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+ [35.20767, 35.20715, 35.31555, 33.234303],
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  ],
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  ]
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  ],
@@ -304,17 +293,23 @@ def test_initial_conditions_data_consistency_plot_save(
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  expected_u = np.array(
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  [
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  [
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- [[-0.0, -0.0, -0.0], [-0.0, -0.0, -0.0], [0.0, -0.0, -0.0]],
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- [[0.0, -0.0, -0.0], [-0.0, -0.0, -0.0], [-0.0, -0.0, -0.0]],
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  [
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- [0.0, 0.0, -0.0],
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- [0.0, 0.0, -0.0],
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- [0.06979556, 0.06167743, -0.02247071],
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+ [-0.0, -0.0, 0.0],
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+ [0.0, -0.0, -0.0],
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+ [0.0, 0.0, 0.06979556],
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+ [0.04268532, 0.04645353, 0.0211786],
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  ],
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  [
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- [0.04268532, 0.03889201, 0.03351666],
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- [0.04645353, 0.04914769, 0.03673013],
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- [0.0211786, 0.03679834, 0.0274788],
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+ [-0.0, -0.0, -0.0],
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+ [-0.0, -0.0, -0.0],
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+ [0.0, 0.0, 0.06167743],
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+ [0.03889201, 0.04914769, 0.03679834],
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+ ],
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+ [
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+ [-0.0, -0.0, -0.0],
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+ [-0.0, -0.0, -0.0],
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+ [-0.0, -0.0, -0.02247071],
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+ [0.03351666, 0.03673013, 0.0274788],
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  ],
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  ]
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  ],
@@ -325,22 +320,19 @@ def test_initial_conditions_data_consistency_plot_save(
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  [
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  [
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  [
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- [0.0, 0.0, 0.0],
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- [0.0, 0.0, -0.0],
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- [-0.0, -0.0, -0.0],
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- [-0.0, -0.0, -0.0],
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+ [0.0, 0.0, -0.0, -0.0],
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+ [-0.0, -0.0, -0.03831354, -0.0],
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+ [-0.00951457, -0.0, 0.01915873, -0.06720348],
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  ],
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  [
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- [-0.0, -0.0, -0.0],
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- [-0.0, -0.0, -0.0],
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- [-0.03831354, -0.02400788, -0.03179555],
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- [-0.0, -0.0, -0.0],
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+ [0.0, 0.0, -0.0, -0.0],
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+ [-0.0, -0.0, -0.02400788, -0.0],
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+ [-0.00576979, -0.0, 0.02625698, -0.08354441],
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  ],
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  [
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- [-0.00951457, -0.00576979, -0.02147919],
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- [-0.0, -0.0, -0.0],
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- [0.01915873, 0.02625698, 0.01757628],
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- [-0.06720348, -0.08354441, -0.13835917],
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+ [0.0, -0.0, -0.0, -0.0],
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+ [-0.0, -0.0, -0.03179555, -0.0],
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+ [-0.02147919, -0.0, 0.01757628, -0.13835917],
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  ],
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  ]
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  ],
@@ -374,28 +366,22 @@ def test_initial_conditions_data_consistency_plot_save(
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  [
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  [
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  [
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- [2341.926, 2340.8894, 2340.557],
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- [2317.8875, 2315.86, 2315.2148],
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- [2297.689, 2285.8933, 2284.404],
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- [2276.4216, 2258.4436, 2256.1062],
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+ [2341.926, 2317.8875, 2297.689, 2276.4216],
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+ [2330.5837, 2317.878, 2278.9314, 2259.975],
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+ [2376.7534, 2362.5308, 2350.3384, 2310.4275],
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+ [2384.8064, 2383.737, 2380.2297, 2350.0762],
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  ],
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  [
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- [2330.5837, 2329.8225, 2329.5264],
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- [2317.878, 2316.6787, 2316.3088],
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- [2278.9314, 2269.464, 2268.904],
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- [2259.975, 2247.7456, 2246.0632],
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+ [2340.8894, 2315.86, 2285.8933, 2258.4436],
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+ [2329.8225, 2316.6787, 2269.464, 2247.7456],
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+ [2373.4402, 2360.5066, 2344.3135, 2287.6785],
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+ [2386.2126, 2385.1553, 2381.4849, 2342.5403],
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  ],
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  [
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- [2376.7534, 2373.4402, 2372.9192],
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- [2362.5308, 2360.5066, 2360.2224],
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- [2350.3384, 2344.3135, 2343.6768],
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- [2310.4275, 2287.6785, 2281.5872],
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- ],
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- [
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- [2384.8064, 2386.2126, 2386.632],
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- [2383.737, 2385.1553, 2385.6685],
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- [2380.2297, 2381.4849, 2381.8616],
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- [2350.0762, 2342.5403, 2339.2244],
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+ [2340.557, 2315.2148, 2284.404, 2256.1062],
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+ [2329.5264, 2316.3088, 2268.904, 2246.0632],
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+ [2372.9192, 2360.2224, 2343.6768, 2281.5872],
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+ [2386.632, 2385.6685, 2381.8616, 2339.2244],
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  ],
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  ]
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  ],
@@ -429,6 +415,15 @@ def test_initial_conditions_data_consistency_plot_save(
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  )
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  initial_conditions_with_bgc_from_climatology.plot(varname="temp", s=0)
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+ initial_conditions_with_bgc_from_climatology.plot(
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+ varname="temp", s=0, depth_contours=True
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+ )
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+ initial_conditions_with_bgc_from_climatology.plot(
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+ varname="temp", eta=0, layer_contours=True
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+ )
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+ initial_conditions_with_bgc_from_climatology.plot(
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+ varname="temp", xi=0, layer_contours=True
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+ )
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  initial_conditions_with_bgc_from_climatology.plot(varname="temp", eta=0)
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  initial_conditions_with_bgc_from_climatology.plot(varname="temp", xi=0)
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  initial_conditions_with_bgc_from_climatology.plot(varname="temp", s=0, xi=0)
@@ -193,6 +193,26 @@ def test_successful_initialization_with_regional_data(grid_fixture, request):
193
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  )
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  assert sfc_forcing.ds is not None
196
+ assert "uwnd" in sfc_forcing.ds["physics"]
197
+ assert "vwnd" in sfc_forcing.ds["physics"]
198
+ assert "swrad" in sfc_forcing.ds["physics"]
199
+ assert "lwrad" in sfc_forcing.ds["physics"]
200
+ assert "Tair" in sfc_forcing.ds["physics"]
201
+ assert "qair" in sfc_forcing.ds["physics"]
202
+ assert "rain" in sfc_forcing.ds["physics"]
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+
204
+ assert sfc_forcing.start_time == start_time
205
+ assert sfc_forcing.end_time == end_time
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+ assert sfc_forcing.physics_source == {
207
+ "name": "ERA5",
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+ "path": fname,
209
+ "climatology": False,
210
+ }
211
+ assert not sfc_forcing.use_coarse_grid
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+
213
+ sfc_forcing.plot("uwnd", time=0)
214
+ sfc_forcing.plot("vwnd", time=0)
215
+ sfc_forcing.plot("rain", time=0)
196
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197
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  sfc_forcing = SurfaceForcing(
198
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  grid=grid,
@@ -202,6 +222,7 @@ def test_successful_initialization_with_regional_data(grid_fixture, request):
202
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  physics_source={"name": "ERA5", "path": fname},
203
223
  )
204
224
 
225
+ assert sfc_forcing.ds is not None
205
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  assert "uwnd" in sfc_forcing.ds["physics"]
206
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  assert "vwnd" in sfc_forcing.ds["physics"]
207
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  assert "swrad" in sfc_forcing.ds["physics"]
@@ -217,6 +238,11 @@ def test_successful_initialization_with_regional_data(grid_fixture, request):
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  "path": fname,
218
239
  "climatology": False,
219
240
  }
241
+ assert sfc_forcing.use_coarse_grid
242
+
243
+ sfc_forcing.plot("uwnd", time=0)
244
+ sfc_forcing.plot("vwnd", time=0)
245
+ sfc_forcing.plot("rain", time=0)
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221
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222
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  @pytest.mark.parametrize(
@@ -90,28 +90,22 @@ def test_vertical_coordinate_data_consistency():
90
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  expected_layer_depth_rho = np.array(
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  [
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  [
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- [17.235603, 9.938617, 3.2495391],
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- [17.235603, 9.938617, 3.2495391],
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- [24.206884, 13.7451725, 4.4592304],
96
- [24.206884, 13.7451725, 4.4592304],
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+ [17.235603, 17.235603, 24.206884, 24.206884],
94
+ [17.235603, 17.235603, 24.206884, 24.206884],
95
+ [25.667452, 25.667452, 35.966946, 35.966946],
96
+ [25.667452, 25.667452, 35.966946, 35.966946],
97
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  ],
98
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  [
99
- [17.235603, 9.938617, 3.2495391],
100
- [17.235603, 9.938617, 3.2495391],
101
- [24.206884, 13.7451725, 4.4592304],
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- [24.206884, 13.7451725, 4.4592304],
99
+ [9.938617, 9.938617, 13.7451725, 13.7451725],
100
+ [9.938617, 9.938617, 13.7451725, 13.7451725],
101
+ [14.528268, 14.528268, 19.916193, 19.916193],
102
+ [14.528268, 14.528268, 19.916193, 19.916193],
103
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  ],
104
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  [
105
- [25.667452, 14.528268, 4.7055993],
106
- [25.667452, 14.528268, 4.7055993],
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- [35.966946, 19.916193, 6.377065],
108
- [35.966946, 19.916193, 6.377065],
109
- ],
110
- [
111
- [25.667452, 14.528268, 4.7055993],
112
- [25.667452, 14.528268, 4.7055993],
113
- [35.966946, 19.916193, 6.377065],
114
- [35.966946, 19.916193, 6.377065],
105
+ [3.2495391, 3.2495391, 4.4592304, 4.4592304],
106
+ [3.2495391, 3.2495391, 4.4592304, 4.4592304],
107
+ [4.7055993, 4.7055993, 6.377065, 6.377065],
108
+ [4.7055993, 4.7055993, 6.377065, 6.377065],
115
109
  ],
116
110
  ],
117
111
  dtype=np.float32,
@@ -119,24 +113,22 @@ def test_vertical_coordinate_data_consistency():
119
113
  expected_layer_depth_u = np.array(
120
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  [
121
115
  [
122
- [17.235603, 9.938617, 3.2495391],
123
- [20.721243, 11.841895, 3.854385],
124
- [24.206884, 13.7451725, 4.4592304],
125
- ],
126
- [
127
- [17.235603, 9.938617, 3.2495391],
128
- [20.721243, 11.841895, 3.854385],
129
- [24.206884, 13.7451725, 4.4592304],
116
+ [17.235603, 20.721243, 24.206884],
117
+ [17.235603, 20.721243, 24.206884],
118
+ [25.667452, 30.817198, 35.966946],
119
+ [25.667452, 30.817198, 35.966946],
130
120
  ],
131
121
  [
132
- [25.667452, 14.528268, 4.7055993],
133
- [30.817198, 17.22223, 5.5413322],
134
- [35.966946, 19.916193, 6.377065],
122
+ [9.938617, 11.841895, 13.7451725],
123
+ [9.938617, 11.841895, 13.7451725],
124
+ [14.528268, 17.22223, 19.916193],
125
+ [14.528268, 17.22223, 19.916193],
135
126
  ],
136
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  [
137
- [25.667452, 14.528268, 4.7055993],
138
- [30.817198, 17.22223, 5.5413322],
139
- [35.966946, 19.916193, 6.377065],
128
+ [3.2495391, 3.854385, 4.4592304],
129
+ [3.2495391, 3.854385, 4.4592304],
130
+ [4.7055993, 5.5413322, 6.377065],
131
+ [4.7055993, 5.5413322, 6.377065],
140
132
  ],
141
133
  ],
142
134
  dtype=np.float32,
@@ -144,22 +136,19 @@ def test_vertical_coordinate_data_consistency():
144
136
  expected_layer_depth_v = np.array(
145
137
  [
146
138
  [
147
- [17.235603, 9.938617, 3.2495391],
148
- [17.235603, 9.938617, 3.2495391],
149
- [24.206884, 13.7451725, 4.4592304],
150
- [24.206884, 13.7451725, 4.4592304],
139
+ [17.235603, 17.235603, 24.206884, 24.206884],
140
+ [21.451529, 21.451529, 30.086914, 30.086914],
141
+ [25.667452, 25.667452, 35.966946, 35.966946],
151
142
  ],
152
143
  [
153
- [21.451529, 12.233442, 3.977569],
154
- [21.451529, 12.233442, 3.977569],
155
- [30.086914, 16.830683, 5.418148],
156
- [30.086914, 16.830683, 5.418148],
144
+ [9.938617, 9.938617, 13.7451725, 13.7451725],
145
+ [12.233442, 12.233442, 16.830683, 16.830683],
146
+ [14.528268, 14.528268, 19.916193, 19.916193],
157
147
  ],
158
148
  [
159
- [25.667452, 14.528268, 4.7055993],
160
- [25.667452, 14.528268, 4.7055993],
161
- [35.966946, 19.916193, 6.377065],
162
- [35.966946, 19.916193, 6.377065],
149
+ [3.2495391, 3.2495391, 4.4592304, 4.4592304],
150
+ [3.977569, 3.977569, 5.418148, 5.418148],
151
+ [4.7055993, 4.7055993, 6.377065, 6.377065],
163
152
  ],
164
153
  ],
165
154
  dtype=np.float32,
@@ -167,28 +156,28 @@ def test_vertical_coordinate_data_consistency():
167
156
  expected_interface_depth_rho = np.array(
168
157
  [
169
158
  [
170
- [21.013529, 13.487298, 6.5489607, -0.0],
171
- [21.013529, 13.487298, 6.5489607, -0.0],
172
- [29.688076, 18.78298, 9.014939, -0.0],
173
- [29.688076, 18.78298, 9.014939, -0.0],
159
+ [21.013529, 21.013529, 29.688076, 29.688076],
160
+ [21.013529, 21.013529, 29.688076, 29.688076],
161
+ [31.51735, 31.51735, 44.52708, 44.52708],
162
+ [31.51735, 31.51735, 44.52708, 44.52708],
174
163
  ],
175
164
  [
176
- [21.013529, 13.487298, 6.5489607, -0.0],
177
- [21.013529, 13.487298, 6.5489607, -0.0],
178
- [29.688076, 18.78298, 9.014939, -0.0],
179
- [29.688076, 18.78298, 9.014939, -0.0],
165
+ [13.487298, 13.487298, 18.78298, 18.78298],
166
+ [13.487298, 13.487298, 18.78298, 18.78298],
167
+ [19.881702, 19.881702, 27.529188, 27.529188],
168
+ [19.881702, 19.881702, 27.529188, 27.529188],
180
169
  ],
181
170
  [
182
- [31.51735, 19.881702, 9.519225, -0.0],
183
- [31.51735, 19.881702, 9.519225, -0.0],
184
- [44.52708, 27.529188, 12.960222, -0.0],
185
- [44.52708, 27.529188, 12.960222, -0.0],
171
+ [6.5489607, 6.5489607, 9.014939, 9.014939],
172
+ [6.5489607, 6.5489607, 9.014939, 9.014939],
173
+ [9.519225, 9.519225, 12.960222, 12.960222],
174
+ [9.519225, 9.519225, 12.960222, 12.960222],
186
175
  ],
187
176
  [
188
- [31.51735, 19.881702, 9.519225, -0.0],
189
- [31.51735, 19.881702, 9.519225, -0.0],
190
- [44.52708, 27.529188, 12.960222, -0.0],
191
- [44.52708, 27.529188, 12.960222, -0.0],
177
+ [-0.0, -0.0, -0.0, -0.0],
178
+ [-0.0, -0.0, -0.0, -0.0],
179
+ [-0.0, -0.0, -0.0, -0.0],
180
+ [-0.0, -0.0, -0.0, -0.0],
192
181
  ],
193
182
  ],
194
183
  dtype=np.float32,
@@ -196,24 +185,28 @@ def test_vertical_coordinate_data_consistency():
196
185
  expected_interface_depth_u = np.array(
197
186
  [
198
187
  [
199
- [21.013529, 13.487298, 6.5489607, -0.0],
200
- [25.350803, 16.13514, 7.78195, -0.0],
201
- [29.688076, 18.78298, 9.014939, -0.0],
188
+ [21.013529, 25.350803, 29.688076],
189
+ [21.013529, 25.350803, 29.688076],
190
+ [31.51735, 38.022217, 44.52708],
191
+ [31.51735, 38.022217, 44.52708],
202
192
  ],
203
193
  [
204
- [21.013529, 13.487298, 6.5489607, -0.0],
205
- [25.350803, 16.13514, 7.78195, -0.0],
206
- [29.688076, 18.78298, 9.014939, -0.0],
194
+ [13.487298, 16.13514, 18.78298],
195
+ [13.487298, 16.13514, 18.78298],
196
+ [19.881702, 23.705446, 27.529188],
197
+ [19.881702, 23.705446, 27.529188],
207
198
  ],
208
199
  [
209
- [31.51735, 19.881702, 9.519225, -0.0],
210
- [38.022217, 23.705446, 11.239724, -0.0],
211
- [44.52708, 27.529188, 12.960222, -0.0],
200
+ [6.5489607, 7.78195, 9.014939],
201
+ [6.5489607, 7.78195, 9.014939],
202
+ [9.519225, 11.239724, 12.960222],
203
+ [9.519225, 11.239724, 12.960222],
212
204
  ],
213
205
  [
214
- [31.51735, 19.881702, 9.519225, -0.0],
215
- [38.022217, 23.705446, 11.239724, -0.0],
216
- [44.52708, 27.529188, 12.960222, -0.0],
206
+ [-0.0, -0.0, -0.0],
207
+ [-0.0, -0.0, -0.0],
208
+ [-0.0, -0.0, -0.0],
209
+ [-0.0, -0.0, -0.0],
217
210
  ],
218
211
  ],
219
212
  dtype=np.float32,
@@ -221,26 +214,29 @@ def test_vertical_coordinate_data_consistency():
221
214
  expected_interface_depth_v = np.array(
222
215
  [
223
216
  [
224
- [21.013529, 13.487298, 6.5489607, -0.0],
225
- [21.013529, 13.487298, 6.5489607, -0.0],
226
- [29.688076, 18.78298, 9.014939, -0.0],
227
- [29.688076, 18.78298, 9.014939, -0.0],
217
+ [21.013529, 21.013529, 29.688076, 29.688076],
218
+ [26.26544, 26.26544, 37.10758, 37.10758],
219
+ [31.51735, 31.51735, 44.52708, 44.52708],
228
220
  ],
229
221
  [
230
- [26.26544, 16.684502, 8.034093, -0.0],
231
- [26.26544, 16.684502, 8.034093, -0.0],
232
- [37.10758, 23.156084, 10.987581, -0.0],
233
- [37.10758, 23.156084, 10.987581, -0.0],
222
+ [13.487298, 13.487298, 18.78298, 18.78298],
223
+ [16.684502, 16.684502, 23.156084, 23.156084],
224
+ [19.881702, 19.881702, 27.529188, 27.529188],
234
225
  ],
235
226
  [
236
- [31.51735, 19.881702, 9.519225, -0.0],
237
- [31.51735, 19.881702, 9.519225, -0.0],
238
- [44.52708, 27.529188, 12.960222, -0.0],
239
- [44.52708, 27.529188, 12.960222, -0.0],
227
+ [6.5489607, 6.5489607, 9.014939, 9.014939],
228
+ [8.034093, 8.034093, 10.987581, 10.987581],
229
+ [9.519225, 9.519225, 12.960222, 12.960222],
230
+ ],
231
+ [
232
+ [-0.0, -0.0, -0.0, -0.0],
233
+ [-0.0, -0.0, -0.0, -0.0],
234
+ [-0.0, -0.0, -0.0, -0.0],
240
235
  ],
241
236
  ],
242
237
  dtype=np.float32,
243
238
  )
239
+
244
240
  # Check the values in the dataset
245
241
  assert np.allclose(grid.ds["sc_r"].values, expected_sc_r)
246
242
  assert np.allclose(grid.ds["Cs_r"].values, expected_Cs_r)
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: roms-tools
3
- Version: 1.1.0
3
+ Version: 1.2.0
4
4
  Summary: Tools for running and analysing UCLA-ROMS simulations
5
5
  Author-email: Nora Loose <nora.loose@gmail.com>, Thomas Nicholas <tom@cworthy.org>
6
6
  License: Apache-2
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