risk-network 0.0.9b4__py3-none-any.whl → 0.0.9b5__py3-none-any.whl

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Files changed (7) hide show
  1. risk/__init__.py +1 -1
  2. risk/annotations/annotations.py +3 -2
  3. {risk_network-0.0.9b4.dist-info → risk_network-0.0.9b5.dist-info}/METADATA +1 -1
  4. {risk_network-0.0.9b4.dist-info → risk_network-0.0.9b5.dist-info}/RECORD +7 -7
  5. {risk_network-0.0.9b4.dist-info → risk_network-0.0.9b5.dist-info}/LICENSE +0 -0
  6. {risk_network-0.0.9b4.dist-info → risk_network-0.0.9b5.dist-info}/WHEEL +0 -0
  7. {risk_network-0.0.9b4.dist-info → risk_network-0.0.9b5.dist-info}/top_level.txt +0 -0
risk/__init__.py CHANGED
@@ -7,4 +7,4 @@ RISK: RISK Infers Spatial Kinships
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  from risk.risk import RISK
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- __version__ = "0.0.9-beta.4"
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+ __version__ = "0.0.9-beta.5"
risk/annotations/annotations.py CHANGED
@@ -65,8 +65,9 @@ def load_annotations(network: nx.Graph, annotations_input: Dict[str, Any]) -> Di
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  "No annotations found in the annotations file for the nodes in the network."
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  )
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- # Remove columns with all zeros to improve performance
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- annotations_pivot = annotations_pivot.loc[:, annotations_pivot.sum(axis=0) != 0]
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+ # Remove columns with all zeros and those with only a single '1' to improve statistical performance
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+ # (i.e., it's unreliable to compute the significance of an annotation in a node cluster based on a single occurrence).
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+ annotations_pivot = annotations_pivot.loc[:, (annotations_pivot.sum(axis=0) > 1)]
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  # Extract ordered nodes and annotations
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  ordered_nodes = tuple(annotations_pivot.index)
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  ordered_annotations = tuple(annotations_pivot.columns)
{risk_network-0.0.9b4.dist-info → risk_network-0.0.9b5.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: risk-network
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- Version: 0.0.9b4
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+ Version: 0.0.9b5
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  Summary: A Python package for biological network analysis
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  Author: Ira Horecka
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  Author-email: Ira Horecka <ira89@icloud.com>
{risk_network-0.0.9b4.dist-info → risk_network-0.0.9b5.dist-info}/RECORD RENAMED
@@ -1,8 +1,8 @@
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- risk/__init__.py,sha256=dZ3VXcE-IJQdsTfZrd9B8BAcyb3WnO6J_uyXuiDu7AQ,112
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+ risk/__init__.py,sha256=xpU4eFf8OBGeA2fxuMCAFmBEQO6YlnDSVL09OvyHThs,112
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  risk/constants.py,sha256=XInRaH78Slnw_sWgAsBFbUHkyA0h0jL0DKGuQNbOvjM,550
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  risk/risk.py,sha256=De1vn8Xc-TKz6aTL0bvJI-SVrIqU3k0IWAbKc7dde1c,23618
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  risk/annotations/__init__.py,sha256=kXgadEXaCh0z8OyhOhTj7c3qXGmWgOhaSZ4gSzSb59U,147
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- risk/annotations/annotations.py,sha256=m3WeCdE1a2undpSl_Q2I17drD95r2McKtpzhiiSdxHY,13143
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+ risk/annotations/annotations.py,sha256=aC30M-wdd72ZjOfn8RZKAsGM7Yti0Wl_4CHTvayoPvY,13312
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  risk/annotations/io.py,sha256=eOkPD9G6KzkhGRc_ZW2McxQ8665o-H3uDG8bmKlzQ80,9591
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  risk/log/__init__.py,sha256=gy7C5L6D222AYUChq5lkc0LsCJ_QMQPaFiBJKbecdac,201
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  risk/log/console.py,sha256=C52s3FgQ2e9kQWcXL8m7rs_pnKXt5Yy8PBHmQkOTiNo,4537
@@ -32,8 +32,8 @@ risk/stats/stats.py,sha256=z8NrhiVj4BzJ250bVLfytpmfC7RzYu7mBuIZD_l0aCA,7222
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  risk/stats/permutation/__init__.py,sha256=neJp7FENC-zg_CGOXqv-iIvz1r5XUKI9Ruxhmq7kDOI,105
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  risk/stats/permutation/permutation.py,sha256=meBNSrbRa9P8WJ54n485l0H7VQJlMSfHqdN4aCKYCtQ,10105
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  risk/stats/permutation/test_functions.py,sha256=lftOude6hee0pyR80HlBD32522JkDoN5hrKQ9VEbuoY,2345
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- risk_network-0.0.9b4.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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- risk_network-0.0.9b4.dist-info/METADATA,sha256=8iJaySThTILJJ7-8Au42vD89VFD_UJ64xYrSCKUSPNo,47497
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- risk_network-0.0.9b4.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
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- risk_network-0.0.9b4.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
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- risk_network-0.0.9b4.dist-info/RECORD,,
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+ risk_network-0.0.9b5.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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+ risk_network-0.0.9b5.dist-info/METADATA,sha256=Oc_07HiBSedyTbbiP-2a-xeLgEH-3zzNdXYzV6FSdQY,47497
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+ risk_network-0.0.9b5.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
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+ risk_network-0.0.9b5.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
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+ risk_network-0.0.9b5.dist-info/RECORD,,