risk-network 0.0.9b42__py3-none-any.whl → 0.0.9b43__py3-none-any.whl

risk/__init__.py

@@ -7,4 +7,4 @@ RISK: Regional Inference of Significant Kinships
 
 from risk.risk import RISK
 
-__version__ = "0.0.9-beta.42"
+__version__ = "0.0.9-beta.43"

risk/annotations/annotations.py

@@ -19,30 +19,12 @@ from nltk.tokenize import word_tokenize
 from risk.log import logger
 from scipy.sparse import coo_matrix
 
+# Add the local NLTK data path to the system path
+nltk.data.path.append("nltk_data")
 
-def _setup_nltk():
-    """Ensure necessary NLTK data is downloaded."""
-    try:
-        nltk.data.find("tokenizers/punkt")
-    except LookupError:
-        # Force download if not found
-        nltk.download("punkt", force=True, quiet=True)
-
-    try:
-        nltk.data.find("corpora/stopwords")
-    except LookupError:
-        nltk.download("stopwords", force=True, quiet=True)
-
-    try:
-        nltk.data.find("corpora/wordnet")
-    except LookupError:
-        nltk.download("wordnet", force=True, quiet=True)
-
-
-# Ensure you have the necessary NLTK data
-_setup_nltk()
-# Use NLTK's stopwords
-STOP_WORDS = set(stopwords.words("english"))
+# Use NLTK's stopwords - load all languages
+STOP_WORDS = set(word for lang in stopwords.fileids() for word in stopwords.words(lang))
+# Initialize the WordNet lemmatizer, which is used for normalizing words
 LEMMATIZER = WordNetLemmatizer()
 
 

{risk_network-0.0.9b42.dist-info → risk_network-0.0.9b43.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: risk-network
-Version: 0.0.9b42
+Version: 0.0.9b43
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

{risk_network-0.0.9b42.dist-info → risk_network-0.0.9b43.dist-info}/RECORD

@@ -1,7 +1,7 @@
-risk/__init__.py,sha256=0G_X2wjPwCz7UG5bgL3bYfsnVpLvoRhcMyS2bV45ZKI,127
+risk/__init__.py,sha256=38C2Lmnez9GxpKuiGvgqF2uJliPu7UtOjt8icOcAldw,127
 risk/risk.py,sha256=s827_lRknFseOP9O4zW8sP-IcCd2EzrpV_tnVY_tz5s,1104
 risk/annotations/__init__.py,sha256=parsbcux1U4urpUqh9AdzbDWuLj9HlMidycMPkpSQFo,179
-risk/annotations/annotations.py,sha256=_2crX1SKphCY1gJmDpRuvYouf8DowScSetbxCG3vLHk,15022
+risk/annotations/annotations.py,sha256=FTnY-aeHpu8R3jwTARp_6VsUwF0Eu_Ix8QJgUajDK8A,14677
 risk/annotations/io.py,sha256=z1AJySsU-KL_IYuHa7j3nvuczmOHgK3WfaQ4TRunvrA,10499
 risk/log/__init__.py,sha256=7LxDysQu7doi0LAvlY2YbjN6iJH0fNknqy8lSLgeljo,217
 risk/log/console.py,sha256=PgjyEvyhYLUSHXPUKEqOmxsDsfrjPICIgqo_cAHq0N8,4575
@@ -33,8 +33,8 @@ risk/stats/stat_tests.py,sha256=tj0ri9w89_1fsjGLuafTWpfBEwZXpSLn7Ej2aAQ5lxk,1177
 risk/stats/permutation/__init__.py,sha256=OLmYLm2uj96hPsSaUs0vUqFYw6Thwch_aHtpL7L0ZFw,127
 risk/stats/permutation/permutation.py,sha256=BWjgdBpLVcHvmwHy0bmD4aJFccxifNBSrrCBPppyKf4,10569
 risk/stats/permutation/test_functions.py,sha256=KlECWTz1EZ6EPF_OAgHb0uznaIhopiVYb_AKUKuC4no,3120
-risk_network-0.0.9b42.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
-risk_network-0.0.9b42.dist-info/METADATA,sha256=vShfLdet9LjI_5lQOuQdcvaG1rIbwbBRO34gF3BFIcw,47627
-risk_network-0.0.9b42.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-risk_network-0.0.9b42.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
-risk_network-0.0.9b42.dist-info/RECORD,,
+risk_network-0.0.9b43.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
+risk_network-0.0.9b43.dist-info/METADATA,sha256=qM3Vt0aCMSbh6QzGTvNBB1f_1texUsh8Kuc2TnYFG5g,47627
+risk_network-0.0.9b43.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+risk_network-0.0.9b43.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
+risk_network-0.0.9b43.dist-info/RECORD,,