risk-network 0.0.8b6__py3-none-any.whl → 0.0.8b7__py3-none-any.whl

risk/__init__.py

@@ -7,4 +7,4 @@ RISK: RISK Infers Spatial Kinships
 
 from risk.risk import RISK
 
-__version__ = "0.0.8-beta.6"
+__version__ = "0.0.8-beta.7"

risk/network/{plot.py → plot/base.py}

@@ -213,6 +213,8 @@ class NetworkPlotter:
 
         # Convert color to RGBA using the _to_rgba helper function - use outline_alpha for the perimeter
         color = _to_rgba(color=color, alpha=outline_alpha)
+        # Set the fill_alpha to 0 if not provided
+        fill_alpha = fill_alpha if fill_alpha is not None else 0.0
         # Extract node coordinates from the network graph
         node_coordinates = self.graph.node_coordinates
         # Calculate the center and radius of the bounding box around the network
@@ -676,7 +678,7 @@ class NetworkPlotter:
         # Set the contour color and linestyle
         contour_colors = [color for _ in range(levels - 1)]
         # Plot the filled contours using fill_alpha for transparency
-        if fill_alpha > 0:
+        if fill_alpha and fill_alpha > 0:
             ax.contourf(
                 x,
                 y,

risk/risk.py

@@ -3,7 +3,7 @@ risk/risk
 ~~~~~~~~~
 """
 
-from typing import Any, Dict, Tuple
+from typing import Any, Dict, Tuple, Union
 
 import networkx as nx
 import numpy as np
@@ -355,6 +355,7 @@ class RISK(NetworkIO, AnnotationsIO):
         graph: NetworkGraph,
         figsize: Tuple = (10, 10),
         background_color: str = "white",
+        background_alpha: Union[float, None] = 1.0,
     ) -> NetworkPlotter:
         """Get a NetworkPlotter object for plotting.
 
@@ -362,6 +363,8 @@ class RISK(NetworkIO, AnnotationsIO):
             graph (NetworkGraph): The graph to plot.
             figsize (tuple, optional): Size of the figure. Defaults to (10, 10).
             background_color (str, optional): Background color of the plot. Defaults to "white".
+            background_alpha (float, None, optional): Transparency level of the background color. If provided, it overrides
+                any existing alpha values found in background_color. Defaults to 1.0.
 
         Returns:
             NetworkPlotter: A NetworkPlotter object configured with the given parameters.
@@ -378,6 +381,7 @@ class RISK(NetworkIO, AnnotationsIO):
             graph,
             figsize=figsize,
             background_color=background_color,
+            background_alpha=background_alpha,
         )
 
     def _load_neighborhoods(

{risk_network-0.0.8b6.dist-info → risk_network-0.0.8b7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.8b6
+Version: 0.0.8b7
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

{risk_network-0.0.8b6.dist-info → risk_network-0.0.8b7.dist-info}/RECORD

@@ -1,6 +1,6 @@
-risk/__init__.py,sha256=oTYQd6b81qD9V2lbuvkOnnilV22_-KXFOBGtoULd5Sc,112
+risk/__init__.py,sha256=Ld6-5HUuOVDCaSGqPvt7caqDuDx8YQ6yDSV1MrTjnCQ,112
 risk/constants.py,sha256=XInRaH78Slnw_sWgAsBFbUHkyA0h0jL0DKGuQNbOvjM,550
-risk/risk.py,sha256=FaQhDCBZxZSAXJsScH0rSbjjCTNZA5vgf9rJj1GHW44,20924
+risk/risk.py,sha256=uZH7GuADCAAkDIx-rPlS6O_is6tUU2Hg28P8xpR-d9g,21240
 risk/annotations/__init__.py,sha256=vUpVvMRE5if01Ic8QY6M2Ae3EFGJHdugEe9PdEkAW4Y,138
 risk/annotations/annotations.py,sha256=ySc_N3nXnKx5RnOpFaEkM6zvTbswbrRcfFLzM0KdOck,11391
 risk/annotations/io.py,sha256=TTXVJQgUGAlKpnGBcx7Dow146IGyozA03nSbl3S7M5M,9475
@@ -15,7 +15,7 @@ risk/network/__init__.py,sha256=iEPeJdZfqp0toxtbElryB8jbz9_t_k4QQ3iDvKE8C_0,126
 risk/network/geometry.py,sha256=H1yGVVqgbfpzBzJwEheDLfvGLSA284jGQQTn612L4Vc,6759
 risk/network/graph.py,sha256=EwD4-1THC5YNdP6PY01Oe35k2QYYqtZpxWraPVH6wa4,16426
 risk/network/io.py,sha256=kY7HqmL3wa1NnqHu61_G8IpT21qpBijpAZ4ixmsseJA,22911
-risk/network/plot.py,sha256=1WmEfmaKrJuMMMQYbVtcuqPwRw3WxFqC2pjHIDX6fpE,85479
+risk/network/plot/base.py,sha256=8Wbrm2Es8cGYGGGOoJqzeUfuDlNlgJ4_6IEIIfMShN8,85611
 risk/stats/__init__.py,sha256=WcgoETQ-hS0LQqKRsAMIPtP15xZ-4eul6VUBuUx4Wzc,220
 risk/stats/hypergeom.py,sha256=o6Qnj31gCAKxr2uQirXrbv7XvdDJGEq69MFW-ubx_hA,2272
 risk/stats/poisson.py,sha256=8x9hB4DCukq4gNIlIKO-c_jYG1-BTwTX53oLauFyfj8,1793
@@ -23,8 +23,8 @@ risk/stats/stats.py,sha256=kvShov-94W6ffgDUTb522vB9hDJQSyTsYif_UIaFfSM,7059
 risk/stats/permutation/__init__.py,sha256=neJp7FENC-zg_CGOXqv-iIvz1r5XUKI9Ruxhmq7kDOI,105
 risk/stats/permutation/permutation.py,sha256=D84Rcpt6iTQniK0PfQGcw9bLcHbMt9p-ARcurUnIXZQ,10095
 risk/stats/permutation/test_functions.py,sha256=lftOude6hee0pyR80HlBD32522JkDoN5hrKQ9VEbuoY,2345
-risk_network-0.0.8b6.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
-risk_network-0.0.8b6.dist-info/METADATA,sha256=CctmgVn--95TlPIJhjI30rqZDobg1eI6F4DRTm1CFNc,47450
-risk_network-0.0.8b6.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
-risk_network-0.0.8b6.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
-risk_network-0.0.8b6.dist-info/RECORD,,
+risk_network-0.0.8b7.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
+risk_network-0.0.8b7.dist-info/METADATA,sha256=wOm-_aHavf5zpMp_UjqIBx2NPl4nR_2YtS1cfFn6UBA,47450
+risk_network-0.0.8b7.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
+risk_network-0.0.8b7.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
+risk_network-0.0.8b7.dist-info/RECORD,,