risk-network 0.0.8b18__py3-none-any.whl → 0.0.8b20__py3-none-any.whl

risk/network/plot/utils/color.py

@@ -16,7 +16,9 @@ from risk.network.plot.utils.layout import calculate_centroids
 def get_annotated_domain_colors(
     graph: NetworkGraph,
     cmap: str = "gist_rainbow",
-    color: Union[str, list, tuple, np.ndarray, None] = None,
+    color: Union[str, List, Tuple, np.ndarray, None] = None,
+    blend_colors: bool = False,
+    blend_gamma: float = 2.2,
     min_scale: float = 0.8,
     max_scale: float = 1.0,
     scale_factor: float = 1.0,
@@ -27,8 +29,10 @@ def get_annotated_domain_colors(
     Args:
         graph (NetworkGraph): The network data and attributes to be visualized.
         cmap (str, optional): Colormap to use for generating domain colors. Defaults to "gist_rainbow".
-        color (str, list, tuple, np.ndarray, or None, optional): Color to use for the domains. Can be a single color or an array of colors.
+        color (str, List, Tuple, np.ndarray, or None, optional): Color to use for the domains. Can be a single color or an array of colors.
             If None, the colormap will be used. Defaults to None.
+        blend_colors (bool, optional): Whether to blend colors for nodes with multiple domains. Defaults to False.
+        blend_gamma (float, optional): Gamma correction factor for perceptual color blending. Defaults to 2.2.
         min_scale (float, optional): Minimum scale for color intensity when generating domain colors. Defaults to 0.8.
         max_scale (float, optional): Maximum scale for color intensity when generating domain colors. Defaults to 1.0.
         scale_factor (float, optional): Factor for adjusting the contrast in the colors generated based on enrichment. Higher values
@@ -43,6 +47,8 @@ def get_annotated_domain_colors(
         graph=graph,
         cmap=cmap,
         color=color,
+        blend_colors=blend_colors,
+        blend_gamma=blend_gamma,
         min_scale=min_scale,
         max_scale=max_scale,
         scale_factor=scale_factor,
@@ -68,7 +74,9 @@ def get_annotated_domain_colors(
 def get_domain_colors(
     graph: NetworkGraph,
     cmap: str = "gist_rainbow",
-    color: Union[str, list, tuple, np.ndarray, None] = None,
+    color: Union[str, List, Tuple, np.ndarray, None] = None,
+    blend_colors: bool = False,
+    blend_gamma: float = 2.2,
     min_scale: float = 0.8,
     max_scale: float = 1.0,
     scale_factor: float = 1.0,
@@ -79,8 +87,10 @@ def get_domain_colors(
     Args:
         graph (NetworkGraph): The network data and attributes to be visualized.
         cmap (str, optional): Name of the colormap to use for generating domain colors. Defaults to "gist_rainbow".
-        color (str, list, tuple, np.ndarray, or None, optional): A specific color or array of colors to use for all domains.
+        color (str, List, Tuple, np.ndarray, or None, optional): A specific color or array of colors to use for all domains.
             If None, the colormap will be used. Defaults to None.
+        blend_colors (bool, optional): Whether to blend colors for nodes with multiple domains. Defaults to False.
+        blend_gamma (float, optional): Gamma correction factor for perceptual color blending. Defaults to 2.2.
         min_scale (float, optional): Minimum intensity scale for the colors generated by the colormap. Controls the dimmest colors.
             Defaults to 0.8.
         max_scale (float, optional): Maximum intensity scale for the colors generated by the colormap. Controls the brightest colors.
@@ -95,7 +105,9 @@ def get_domain_colors(
     # Get colors for each domain
     domain_colors = _get_domain_colors(graph=graph, cmap=cmap, color=color, random_seed=random_seed)
     # Generate composite colors for nodes
-    node_colors = _get_composite_node_colors(graph=graph, domain_colors=domain_colors)
+    node_colors = _get_composite_node_colors(
+        graph=graph, domain_colors=domain_colors, blend_colors=blend_colors, blend_gamma=blend_gamma
+    )
     # Transform colors to ensure proper alpha values and intensity
     transformed_colors = _transform_colors(
         node_colors,
@@ -110,20 +122,20 @@ def get_domain_colors(
 def _get_domain_colors(
     graph: NetworkGraph,
     cmap: str = "gist_rainbow",
-    color: Union[str, list, tuple, np.ndarray, None] = None,
+    color: Union[str, List, Tuple, np.ndarray, None] = None,
     random_seed: int = 888,
-) -> Dict[str, Any]:
+) -> Dict[int, Any]:
     """Get colors for each domain.
 
     Args:
         graph (NetworkGraph): The network data and attributes to be visualized.
         cmap (str, optional): The name of the colormap to use. Defaults to "gist_rainbow".
-        color (str, list, tuple, np.ndarray, or None, optional): A specific color or array of colors to use for the domains.
+        color (str, List, Tuple, np.ndarray, or None, optional): A specific color or array of colors to use for the domains.
             If None, the colormap will be used. Defaults to None.
         random_seed (int, optional): Seed for random number generation. Defaults to 888.
 
     Returns:
-        dict: A dictionary mapping domain keys to their corresponding RGBA colors.
+        Dict[int, Any]: A dictionary mapping domain keys to their corresponding RGBA colors.
     """
     # Get colors for each domain based on node positions
     domain_colors = _get_colors(
@@ -136,12 +148,17 @@ def _get_domain_colors(
     return dict(zip(graph.domain_id_to_node_ids_map.keys(), domain_colors))
 
 
-def _get_composite_node_colors(graph: NetworkGraph, domain_colors: np.ndarray) -> np.ndarray:
-    """Generate composite colors for nodes based on domain colors and counts.
+def _get_composite_node_colors(
+    graph, domain_colors: np.ndarray, blend_colors: bool = False, blend_gamma: float = 2.2
+) -> np.ndarray:
+    """Generate composite colors for nodes based on domain colors and enrichment values, with optional color blending.
 
     Args:
         graph (NetworkGraph): The network data and attributes to be visualized.
-        domain_colors (np.ndarray): Array of colors corresponding to each domain.
+        domain_colors (np.ndarray): Array or list of RGBA colors corresponding to each domain.
+        blend_colors (bool): Whether to blend colors for nodes with multiple domains. Defaults to False.
+        blend_gamma (float, optional): Gamma correction factor to be used for perceptual color blending.
+            This parameter is only relevant if blend_colors is True. Defaults to 2.2.
 
     Returns:
         np.ndarray: Array of composite colors for each node.
@@ -150,11 +167,38 @@ def _get_composite_node_colors(graph: NetworkGraph, domain_colors: np.ndarray) -
     num_nodes = len(graph.node_coordinates)
     # Initialize composite colors array with shape (number of nodes, 4) for RGBA
     composite_colors = np.zeros((num_nodes, 4))
-    # Assign colors to nodes based on domain_colors
-    for domain_id, nodes in graph.domain_id_to_node_ids_map.items():
-        color = domain_colors[domain_id]
-        for node in nodes:
-            composite_colors[node] = color
+
+    # If blending is not required, directly assign domain colors to nodes
+    if not blend_colors:
+        for domain_id, nodes in graph.domain_id_to_node_ids_map.items():
+            color = domain_colors[domain_id]
+            for node in nodes:
+                composite_colors[node] = color
+
+    # If blending is required
+    else:
+        for node, node_info in graph.node_id_to_domain_ids_and_enrichments_map.items():
+            domains = node_info["domains"]  # List of domain IDs
+            enrichments = node_info["enrichments"]  # List of enrichment values
+            # Filter domains and enrichments to keep only those with corresponding colors in domain_colors
+            filtered_domains_enrichments = [
+                (domain_id, enrichment)
+                for domain_id, enrichment in zip(domains, enrichments)
+                if domain_id in domain_colors
+            ]
+            # If no valid domains exist, skip this node
+            if not filtered_domains_enrichments:
+                continue
+
+            # Unpack filtered domains and enrichments
+            filtered_domains, filtered_enrichments = zip(*filtered_domains_enrichments)
+            # Get the colors corresponding to the valid filtered domains
+            colors = [domain_colors[domain_id] for domain_id in filtered_domains]
+            # Blend the colors using the given gamma (default is 2.2 if None)
+            gamma = blend_gamma if blend_gamma is not None else 2.2
+            composite_color = _blend_colors_perceptually(colors, filtered_enrichments, gamma)
+            # Assign the composite color to the node
+            composite_colors[node] = composite_color
 
     return composite_colors
 
@@ -163,7 +207,7 @@ def _get_colors(
     network,
     domain_id_to_node_ids_map,
     cmap: str = "gist_rainbow",
-    color: Union[str, list, tuple, np.ndarray, None] = None,
+    color: Union[str, List, Tuple, np.ndarray, None] = None,
     random_seed: int = 888,
 ) -> List[Tuple]:
     """Generate a list of RGBA colors based on domain centroids, ensuring that domains
@@ -171,9 +215,9 @@ def _get_colors(
 
     Args:
         network (NetworkX graph): The graph representing the network.
-        domain_id_to_node_ids_map (dict): Mapping from domain IDs to lists of node IDs.
+        domain_id_to_node_ids_map (Dict[int, Any]): Mapping from domain IDs to lists of node IDs.
         cmap (str, optional): The name of the colormap to use. Defaults to "gist_rainbow".
-        color (str, list, tuple, np.ndarray, or None, optional): A specific color or array of colors to use for the domains.
+        color (str, List, Tuple, np.ndarray, or None, optional): A specific color or array of colors to use for the domains.
             If None, the colormap will be used. Defaults to None.
         random_seed (int, optional): Seed for random number generation. Defaults to 888.
 
@@ -237,6 +281,33 @@ def _assign_distant_colors(dist_matrix, num_colors_to_generate):
     return color_positions
 
 
+def _blend_colors_perceptually(
+    colors: Union[List, Tuple, np.ndarray], enrichments: List[float], gamma: float = 2.2
+) -> Tuple[float, float, float, float]:
+    """Blends a list of RGBA colors using gamma correction for perceptually uniform color mixing.
+
+    Args:
+        colors (List, Tuple, np.ndarray): List of RGBA colors. Can be a list, tuple, or NumPy array of RGBA values.
+        enrichments (List[float]): Corresponding list of enrichment values.
+        gamma (float, optional): Gamma correction factor, default is 2.2 (typical for perceptual blending).
+
+    Returns:
+        Tuple[float, float, float, float]: The blended RGBA color.
+    """
+    # Normalize enrichments so they sum up to 1 (proportions)
+    total_enrichment = sum(enrichments)
+    proportions = [enrichment / total_enrichment for enrichment in enrichments]
+    # Convert colors to gamma-corrected space (apply gamma correction to RGB channels)
+    gamma_corrected_colors = [[channel**gamma for channel in color[:3]] for color in colors]
+    # Blend the colors in gamma-corrected space
+    blended_color = np.dot(proportions, gamma_corrected_colors)
+    # Convert back from gamma-corrected space to linear space (by applying inverse gamma correction)
+    blended_color = [channel ** (1 / gamma) for channel in blended_color]
+    # Average the alpha channel separately (no gamma correction on alpha)
+    alpha = np.dot(proportions, [color[3] for color in colors])
+    return tuple(blended_color + [alpha])
+
+
 def _transform_colors(
     colors: np.ndarray,
     enrichment_sums: np.ndarray,
@@ -283,14 +354,14 @@ def _transform_colors(
 
 
 def to_rgba(
-    color: Union[str, list, tuple, np.ndarray],
+    color: Union[str, List, Tuple, np.ndarray],
     alpha: Union[float, None] = None,
     num_repeats: Union[int, None] = None,
 ) -> np.ndarray:
     """Convert color(s) to RGBA format, applying alpha and repeating as needed.
 
     Args:
-        color (str, list, tuple, np.ndarray): The color(s) to convert. Can be a string (e.g., 'red'), a list or tuple of RGB/RGBA values,
+        color (str, List, Tuple, np.ndarray): The color(s) to convert. Can be a string (e.g., 'red'), a list or tuple of RGB/RGBA values,
             or an `np.ndarray` of colors.
         alpha (float, None, optional): Alpha value (transparency) to apply. If provided, it overrides any existing alpha values found
             in color.
@@ -306,7 +377,7 @@ def to_rgba(
         if isinstance(c, str):
             # Convert color names or hex values (e.g., 'red', '#FF5733') to RGBA
             rgba = np.array(mcolors.to_rgba(c))
-        elif isinstance(c, (list, tuple, np.ndarray)) and len(c) in [3, 4]:
+        elif isinstance(c, (List, Tuple, np.ndarray)) and len(c) in [3, 4]:
             # Convert RGB (3) or RGBA (4) values to RGBA format
             rgba = np.array(mcolors.to_rgba(c))
         else:
@@ -325,8 +396,8 @@ def to_rgba(
     # Handle a single color (string or RGB/RGBA list/tuple)
     if (
         isinstance(color, str)
-        or isinstance(color, (list, tuple, np.ndarray))
-        and not any(isinstance(c, (str, list, tuple, np.ndarray)) for c in color)
+        or isinstance(color, (List, Tuple, np.ndarray))
+        and not any(isinstance(c, (str, List, Tuple, np.ndarray)) for c in color)
     ):
         rgba_color = convert_to_rgba(color)
         if num_repeats:
@@ -336,7 +407,7 @@ def to_rgba(
         return np.array([rgba_color])  # Return a single color wrapped in a numpy array
 
     # Handle a list/array of colors
-    elif isinstance(color, (list, tuple, np.ndarray)):
+    elif isinstance(color, (List, Tuple, np.ndarray)):
         rgba_colors = np.array(
             [convert_to_rgba(c) for c in color]
         )  # Convert each color in the list to RGBA

risk/network/plot/utils/layout.py

@@ -35,7 +35,7 @@ def calculate_centroids(network, domain_id_to_node_ids_map):
 
     Args:
         network (NetworkX graph): The graph representing the network.
-        domain_id_to_node_ids_map (dict): Mapping from domain IDs to lists of node IDs.
+        domain_id_to_node_ids_map (Dict[int, Any]): Mapping from domain IDs to lists of node IDs.
 
     Returns:
         List[Tuple[float, float]]: List of centroids (x, y) for each domain.

risk/risk.py

@@ -68,7 +68,7 @@ class RISK(NetworkIO, AnnotationsIO):
 
         Args:
             network (nx.Graph): The network graph.
-            annotations (dict): The annotations associated with the network.
+            annotations (Dict[str, Any]): The annotations associated with the network.
             distance_metric (str, optional): Distance metric for neighborhood analysis. Defaults to "louvain".
             louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
             edge_length_threshold (float, optional): Edge length threshold for neighborhood analysis. Defaults to 0.5.
@@ -76,7 +76,7 @@ class RISK(NetworkIO, AnnotationsIO):
             random_seed (int, optional): Seed for random number generation. Defaults to 888.
 
         Returns:
-            dict: Computed significance of neighborhoods.
+            Dict[str, Any]: Computed significance of neighborhoods.
         """
         log_header("Running hypergeometric test")
         # Log neighborhood analysis parameters
@@ -121,7 +121,7 @@ class RISK(NetworkIO, AnnotationsIO):
 
         Args:
             network (nx.Graph): The network graph.
-            annotations (dict): The annotations associated with the network.
+            annotations (Dict[str, Any]): The annotations associated with the network.
             distance_metric (str, optional): Distance metric for neighborhood analysis. Defaults to "louvain".
             louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
             edge_length_threshold (float, optional): Edge length threshold for neighborhood analysis. Defaults to 0.5.
@@ -129,7 +129,7 @@ class RISK(NetworkIO, AnnotationsIO):
             random_seed (int, optional): Seed for random number generation. Defaults to 888.
 
         Returns:
-            dict: Computed significance of neighborhoods.
+            Dict[str, Any]: Computed significance of neighborhoods.
         """
         log_header("Running Poisson test")
         # Log neighborhood analysis parameters
@@ -177,7 +177,7 @@ class RISK(NetworkIO, AnnotationsIO):
 
         Args:
             network (nx.Graph): The network graph.
-            annotations (dict): The annotations associated with the network.
+            annotations (Dict[str, Any]): The annotations associated with the network.
             distance_metric (str, optional): Distance metric for neighborhood analysis. Defaults to "louvain".
             louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
             edge_length_threshold (float, optional): Edge length threshold for neighborhood analysis. Defaults to 0.5.
@@ -188,7 +188,7 @@ class RISK(NetworkIO, AnnotationsIO):
             max_workers (int, optional): Maximum number of workers for parallel computation. Defaults to 1.
 
         Returns:
-            dict: Computed significance of neighborhoods.
+            Dict[str, Any]: Computed significance of neighborhoods.
         """
         log_header("Running permutation test")
         # Log neighborhood analysis parameters
@@ -253,7 +253,7 @@ class RISK(NetworkIO, AnnotationsIO):
         Args:
             network (nx.Graph): The network graph.
             annotations (pd.DataFrame): DataFrame containing annotation data for the network.
-            neighborhoods (dict): Neighborhood enrichment data.
+            neighborhoods (Dict[str, Any]): Neighborhood enrichment data.
             tail (str, optional): Type of significance tail ("right", "left", "both"). Defaults to "right".
             pval_cutoff (float, optional): p-value cutoff for significance. Defaults to 0.01.
             fdr_cutoff (float, optional): FDR cutoff for significance. Defaults to 0.9999.
@@ -362,7 +362,7 @@ class RISK(NetworkIO, AnnotationsIO):
 
         Args:
             graph (NetworkGraph): The graph to plot.
-            figsize (tuple, optional): Size of the figure. Defaults to (10, 10).
+            figsize (Tuple, optional): Size of the figure. Defaults to (10, 10).
             background_color (str, optional): Background color of the plot. Defaults to "white".
             background_alpha (float, None, optional): Transparency level of the background color. If provided, it overrides
                 any existing alpha values found in background_color. Defaults to 1.0.
@@ -395,9 +395,13 @@ class RISK(NetworkIO, AnnotationsIO):
         Args:
             network (nx.Graph): The network graph.
             annotations (pd.DataFrame): The matrix of annotations associated with the network.
-            distance_metric (str, optional): Distance metric for neighborhood analysis. Defaults to "louvain".
+            distance_metric (str, List, Tuple, or np.ndarray, optional): The distance metric(s) to use. Can be a string for one
+                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'label_propagation',
+                'markov_clustering', 'walktrap', 'spinglass'). Defaults to 'louvain'.
             louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
-            edge_length_threshold (float, optional): Edge length threshold for neighborhood analysis. Defaults to 0.5.
+            edge_length_threshold (float, List, Tuple, or np.ndarray, optional): Edge length threshold(s) for creating subgraphs.
+                Can be a single float for one threshold or a list/tuple of floats corresponding to multiple thresholds.
+                Defaults to 0.5.
             random_seed (int, optional): Seed for random number generation. Defaults to 888.
 
         Returns:
@@ -437,13 +441,13 @@ class RISK(NetworkIO, AnnotationsIO):
 
         Args:
             network (nx.Graph): The network graph.
-            annotations (dict): Annotations data for the network.
-            neighborhoods (dict): Neighborhood enrichment data.
+            annotations (Dict[str, Any]): Annotations data for the network.
+            neighborhoods (Dict[str, Any]): Neighborhood enrichment data.
             min_cluster_size (int, optional): Minimum size for clusters. Defaults to 5.
             max_cluster_size (int, optional): Maximum size for clusters. Defaults to 1000.
 
         Returns:
-            dict: Top annotations identified within the network.
+            Dict[str, Any]: Top annotations identified within the network.
         """
         # Extract necessary data from annotations and neighborhoods
         ordered_annotations = annotations["ordered_annotations"]
@@ -470,7 +474,7 @@ class RISK(NetworkIO, AnnotationsIO):
         """Define domains in the network based on enrichment data.
 
         Args:
-            neighborhoods (dict): Enrichment data for neighborhoods.
+            neighborhoods (Dict[str, Any]): Enrichment data for neighborhoods.
             top_annotations (pd.DataFrame): Enrichment matrix for top annotations.
             linkage_criterion (str): Clustering criterion for defining domains.
             linkage_method (str): Clustering method to use.

risk/stats/hypergeom.py

@@ -20,7 +20,7 @@ def compute_hypergeom_test(
         null_distribution (str, optional): Type of null distribution ('network' or 'annotations'). Defaults to "network".
 
     Returns:
-        dict: Dictionary containing depletion and enrichment p-values.
+        Dict[str, Any]: Dictionary containing depletion and enrichment p-values.
     """
     # Get the total number of nodes in the network
     total_node_count = neighborhoods.shape[0]

risk/stats/permutation/permutation.py

@@ -35,7 +35,7 @@ def compute_permutation_test(
         max_workers (int, optional): Number of workers for multiprocessing. Defaults to 1.
 
     Returns:
-        dict: Dictionary containing depletion and enrichment p-values.
+        Dict[str, Any]: Dictionary containing depletion and enrichment p-values.
     """
     # Ensure that the matrices are in the correct format and free of NaN values
     neighborhoods = neighborhoods.astype(np.float32)

risk/stats/poisson.py

@@ -3,7 +3,7 @@ risk/stats/poisson
 ~~~~~~~~~~~~~~~~~~
 """
 
-from typing import Dict, Any
+from typing import Any, Dict
 
 import numpy as np
 from scipy.stats import poisson
@@ -20,7 +20,7 @@ def compute_poisson_test(
         null_distribution (str, optional): Type of null distribution ('network' or 'annotations'). Defaults to "network".
 
     Returns:
-        dict: Dictionary containing depletion and enrichment p-values.
+        Dict[str, Any]: Dictionary containing depletion and enrichment p-values.
     """
     # Matrix multiplication to get the number of annotated nodes in each neighborhood
     annotated_in_neighborhood = neighborhoods @ annotations

risk/stats/stats.py

@@ -3,7 +3,7 @@ risk/stats/stats
 ~~~~~~~~~~~~~~~~
 """
 
-from typing import Union
+from typing import Any, Dict, Union
 
 import numpy as np
 from statsmodels.stats.multitest import fdrcorrection
@@ -15,7 +15,7 @@ def calculate_significance_matrices(
     tail: str = "right",
     pval_cutoff: float = 0.05,
     fdr_cutoff: float = 0.05,
-) -> dict:
+) -> Dict[str, Any]:
     """Calculate significance matrices based on p-values and specified tail.
 
     Args:
@@ -26,8 +26,8 @@ def calculate_significance_matrices(
         fdr_cutoff (float, optional): Cutoff for FDR significance if applied. Defaults to 0.05.
 
     Returns:
-        dict: Dictionary containing the enrichment matrix, binary significance matrix,
-              and the matrix of significant enrichment values.
+        Dict[str, Any]: Dictionary containing the enrichment matrix, binary significance matrix,
+            and the matrix of significant enrichment values.
     """
     if fdr_cutoff < 1.0:
         # Apply FDR correction to depletion p-values

{risk_network-0.0.8b18.dist-info → risk_network-0.0.8b20.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.8b18
+Version: 0.0.8b20
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

risk_network-0.0.8b20.dist-info/RECORD

@@ -0,0 +1,37 @@
+risk/__init__.py,sha256=MOWrmv2B-I1GTr0sgWTb-CLgeMWceWa6q2E6oeGC2CA,113
+risk/constants.py,sha256=XInRaH78Slnw_sWgAsBFbUHkyA0h0jL0DKGuQNbOvjM,550
+risk/risk.py,sha256=_ufeTLOAAT4QwrRysvDJOQeE0qMvpp3BSSayfFLhGJE,21720
+risk/annotations/__init__.py,sha256=vUpVvMRE5if01Ic8QY6M2Ae3EFGJHdugEe9PdEkAW4Y,138
+risk/annotations/annotations.py,sha256=KHGeF5vBDmX711nA08DfhxI9z7Z1Oaeo91ueWhM6vs8,11370
+risk/annotations/io.py,sha256=powWzeimVdE0WCwlBCXyu5otMyZZHQujC0DS3m5DC0c,9505
+risk/log/__init__.py,sha256=aDUz5LMFQsz0UlsQI2EdXtiBKRLfml1UMeZKC7QQIGU,134
+risk/log/config.py,sha256=m8pzj-hN4vI_2JdJUfyOoSvzT8_lhoIfBt27sKbnOes,4535
+risk/log/params.py,sha256=rvyg86RnkHwotST7x42RgsiYfq2HB-9BZxp6KkT_04o,6415
+risk/neighborhoods/__init__.py,sha256=tKKEg4lsbqFukpgYlUGxU_v_9FOqK7V0uvM9T2QzoL0,206
+risk/neighborhoods/community.py,sha256=MAgIblbuisEPwVU6mFZd4Yd9NUKlaHK99suw51r1Is0,7065
+risk/neighborhoods/domains.py,sha256=DbhUFsvbr8wuvrNr7a0PaAJO-cdv6U3-T4CXB4-j5Qw,10930
+risk/neighborhoods/neighborhoods.py,sha256=OPGNfeGQR533vWjger7f34ZPSgw9250LQXcTEIAhQvg,21165
+risk/network/__init__.py,sha256=iEPeJdZfqp0toxtbElryB8jbz9_t_k4QQ3iDvKE8C_0,126
+risk/network/geometry.py,sha256=Y3Brp0XYWoBL2VHJX7I-gW5x-q7lGiEMqr2kqtutgkQ,6811
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