risk-network 0.0.8b12__py3-none-any.whl → 0.0.8b13__py3-none-any.whl

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Files changed (7) hide show
  1. risk/__init__.py +1 -1
  2. risk/network/plot/network.py +12 -2
  3. {risk_network-0.0.8b12.dist-info → risk_network-0.0.8b13.dist-info}/METADATA +1 -1
  4. {risk_network-0.0.8b12.dist-info → risk_network-0.0.8b13.dist-info}/RECORD +7 -7
  5. {risk_network-0.0.8b12.dist-info → risk_network-0.0.8b13.dist-info}/LICENSE +0 -0
  6. {risk_network-0.0.8b12.dist-info → risk_network-0.0.8b13.dist-info}/WHEEL +0 -0
  7. {risk_network-0.0.8b12.dist-info → risk_network-0.0.8b13.dist-info}/top_level.txt +0 -0
risk/__init__.py CHANGED
@@ -7,4 +7,4 @@ RISK: RISK Infers Spatial Kinships
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  from risk.risk import RISK
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- __version__ = "0.0.8-beta.12"
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+ __version__ = "0.0.8-beta.13"
risk/network/plot/network.py CHANGED
@@ -234,12 +234,22 @@ class Network:
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  network_colors[:, 3] = alpha # Apply the alpha value to the enriched nodes' A channel
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  # Convert the non-enriched color to RGBA using the to_rgba helper function
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  nonenriched_color = to_rgba(color=nonenriched_color, alpha=nonenriched_alpha)
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- # Adjust node colors: replace any fully black nodes (RGB == 0) with the non-enriched color and its alpha
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+
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+ # Compute the sum of RGB values for each color (ignoring alpha)
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+ color_sums = network_colors[:, :3].sum(axis=1)
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+ # Find the index of the darkest color (the lowest sum of RGB values)
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+ darkest_color_index = np.argmin(color_sums)
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+ # Extract the darkest color's RGB values
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+ darkest_color = network_colors[darkest_color_index, :3]
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+ # Adjust node colors: replace the darkest color with the non-enriched color
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  adjusted_network_colors = np.where(
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- np.all(network_colors[:, :3] == 0, axis=1, keepdims=True), # Check RGB values only
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+ np.all(
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+ network_colors[:, :3] == darkest_color, axis=1, keepdims=True
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+ ), # Check if the color matches the darkest color
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  np.array(nonenriched_color), # Apply the non-enriched color with alpha
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  network_colors, # Keep the original colors for enriched nodes
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  )
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+
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  return adjusted_network_colors
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  def get_annotated_node_sizes(
{risk_network-0.0.8b12.dist-info → risk_network-0.0.8b13.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: risk-network
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- Version: 0.0.8b12
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+ Version: 0.0.8b13
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  Summary: A Python package for biological network analysis
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  Author: Ira Horecka
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  Author-email: Ira Horecka <ira89@icloud.com>
{risk_network-0.0.8b12.dist-info → risk_network-0.0.8b13.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- risk/__init__.py,sha256=likYFfZ5PmIhnkglQu8_zeaHGOBKURKzUUbrBCBZY8o,113
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+ risk/__init__.py,sha256=NFLV6xDRDZaq7QKj28pf0H3eQA2SphZ1FXgsKXfGbkk,113
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  risk/constants.py,sha256=XInRaH78Slnw_sWgAsBFbUHkyA0h0jL0DKGuQNbOvjM,550
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  risk/risk.py,sha256=slJXca_a726_D7oXwe765HaKTv3ZrOvhttyrWdCGPkA,21231
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  risk/annotations/__init__.py,sha256=vUpVvMRE5if01Ic8QY6M2Ae3EFGJHdugEe9PdEkAW4Y,138
@@ -19,7 +19,7 @@ risk/network/plot/__init__.py,sha256=MfmaXJgAZJgXZ2wrhK8pXwzETlcMaLChhWXKAozniAo
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  risk/network/plot/canvas.py,sha256=LXHndwanWIBShChoPag8zgGHF2P9MFWYdEnLKc2eeb0,10295
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  risk/network/plot/contour.py,sha256=YPG8Uz0VlJ4skLdGaTH_FmQN6A_ArK8XSTNo1LzkSws,14276
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  risk/network/plot/labels.py,sha256=PV21hig6gQJZRgfUAP9-zpn4wEmQFEjS2_X63SgzWMs,42064
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- risk/network/plot/network.py,sha256=83ZXjGGrgRprWvDldWfhRe6SFXTv_QoI20OWzyEmVJU,12593
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+ risk/network/plot/network.py,sha256=iikZpPKFxeIJgAlp0Wd6kXVzVp341wHpvQ2vLFdQELw,13000
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  risk/network/plot/plotter.py,sha256=rQV4Db6Ud86FJm11uaBvgSuzpmGsrZxnsRnUKjg6w84,5572
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  risk/network/plot/utils.py,sha256=jZgI8EysSjviQmdYAceZk2MwJXcdeFAkYp-odZNqV0k,6316
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  risk/stats/__init__.py,sha256=WcgoETQ-hS0LQqKRsAMIPtP15xZ-4eul6VUBuUx4Wzc,220
@@ -29,8 +29,8 @@ risk/stats/stats.py,sha256=kvShov-94W6ffgDUTb522vB9hDJQSyTsYif_UIaFfSM,7059
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  risk/stats/permutation/__init__.py,sha256=neJp7FENC-zg_CGOXqv-iIvz1r5XUKI9Ruxhmq7kDOI,105
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  risk/stats/permutation/permutation.py,sha256=D84Rcpt6iTQniK0PfQGcw9bLcHbMt9p-ARcurUnIXZQ,10095
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  risk/stats/permutation/test_functions.py,sha256=lftOude6hee0pyR80HlBD32522JkDoN5hrKQ9VEbuoY,2345
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- risk_network-0.0.8b12.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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- risk_network-0.0.8b12.dist-info/METADATA,sha256=-wKC6cGDbBGW7fG0wmdkxHRZKHvC5knHUYMqD0egagI,47498
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- risk_network-0.0.8b12.dist-info/WHEEL,sha256=OVMc5UfuAQiSplgO0_WdW7vXVGAt9Hdd6qtN4HotdyA,91
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- risk_network-0.0.8b12.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
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- risk_network-0.0.8b12.dist-info/RECORD,,
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+ risk_network-0.0.8b13.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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+ risk_network-0.0.8b13.dist-info/METADATA,sha256=_Fn1n_WLyoZ8NTHq_bfr3tnx9_16CXcmvyWWrclNNFY,47498
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+ risk_network-0.0.8b13.dist-info/WHEEL,sha256=OVMc5UfuAQiSplgO0_WdW7vXVGAt9Hdd6qtN4HotdyA,91
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+ risk_network-0.0.8b13.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
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+ risk_network-0.0.8b13.dist-info/RECORD,,