risk-network 0.0.6b7__py3-none-any.whl → 0.0.6b8__py3-none-any.whl

risk/__init__.py

@@ -7,4 +7,4 @@ RISK: RISK Infers Spatial Kinships
 
 from risk.risk import RISK
 
-__version__ = "0.0.6-beta.7"
+__version__ = "0.0.6-beta.8"

risk/network/plot.py

@@ -569,6 +569,8 @@ class NetworkPlotter:
         arrow_style: str = "->",
         arrow_color: Union[str, List, Tuple, np.ndarray] = "black",
         arrow_alpha: float = 1.0,
+        arrow_base_shrink: float = 0.0,
+        arrow_tip_shrink: float = 0.0,
         max_labels: Union[int, None] = None,
         max_words: int = 10,
         min_words: int = 1,
@@ -592,6 +594,8 @@ class NetworkPlotter:
             arrow_style (str, optional): Style of the arrows pointing to centroids. Defaults to "->".
             arrow_color (str, list, tuple, or np.ndarray, optional): Color of the arrows. Defaults to "black".
             arrow_alpha (float, optional): Transparency level for the arrow color. Defaults to 1.0.
+            arrow_base_shrink (float, optional): Distance between the text and the base of the arrow. Defaults to 0.0.
+            arrow_tip_shrink (float, optional): Distance between the arrow tip and the centroid. Defaults to 0.0.
             max_labels (int, optional): Maximum number of labels to plot. Defaults to None (no limit).
             max_words (int, optional): Maximum number of words in a label. Defaults to 10.
             min_words (int, optional): Minimum number of words required to display a label. Defaults to 1.
@@ -622,6 +626,8 @@ class NetworkPlotter:
             label_arrow_style=arrow_style,
             label_arrow_color="custom" if isinstance(arrow_color, np.ndarray) else arrow_color,
             label_arrow_alpha=arrow_alpha,
+            label_arrow_base_shrink=arrow_base_shrink,
+            label_arrow_tip_shrink=arrow_tip_shrink,
             label_max_labels=max_labels,
             label_max_words=max_words,
             label_min_words=min_words,
@@ -746,7 +752,11 @@ class NetworkPlotter:
                 fontname=font,
                 color=fontcolor[idx],
                 arrowprops=dict(
-                    arrowstyle=arrow_style, color=arrow_color[idx], linewidth=arrow_linewidth
+                    arrowstyle=arrow_style,
+                    color=arrow_color[idx],
+                    linewidth=arrow_linewidth,
+                    shrinkA=arrow_base_shrink,
+                    shrinkB=arrow_tip_shrink,
                 ),
             )
             # Overlay domain ID at the centroid if requested
@@ -778,6 +788,8 @@ class NetworkPlotter:
         arrow_style: str = "->",
         arrow_color: Union[str, List, Tuple, np.ndarray] = "black",
         arrow_alpha: float = 1.0,
+        arrow_base_shrink: float = 0.0,
+        arrow_tip_shrink: float = 0.0,
     ) -> None:
         """Annotate the network graph with a label for the given nodes, with one arrow pointing to each centroid of sublists of nodes.
 
@@ -795,6 +807,8 @@ class NetworkPlotter:
             arrow_style (str, optional): Style of the arrows pointing to the centroid. Defaults to "->".
             arrow_color (str, list, tuple, or np.ndarray, optional): Color of the arrow. Defaults to "black".
             arrow_alpha (float, optional): Transparency level for the arrow color. Defaults to 1.0.
+            arrow_base_shrink (float, optional): Distance between the text and the base of the arrow. Defaults to 0.0.
+            arrow_tip_shrink (float, optional): Distance between the arrow tip and the centroid. Defaults to 0.0.
         """
         # Check if nodes is a list of lists or a flat list
         if any(isinstance(item, (list, tuple, np.ndarray)) for item in nodes):
@@ -844,7 +858,11 @@ class NetworkPlotter:
                 fontname=font,
                 color=fontcolor_rgba,
                 arrowprops=dict(
-                    arrowstyle=arrow_style, color=arrow_color_rgba, linewidth=arrow_linewidth
+                    arrowstyle=arrow_style,
+                    color=arrow_color_rgba,
+                    linewidth=arrow_linewidth,
+                    shrinkA=arrow_base_shrink,
+                    shrinkB=arrow_tip_shrink,
                 ),
             )
 

{risk_network-0.0.6b7.dist-info → risk_network-0.0.6b8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.6b7
+Version: 0.0.6b8
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

{risk_network-0.0.6b7.dist-info → risk_network-0.0.6b8.dist-info}/RECORD

@@ -1,4 +1,4 @@
-risk/__init__.py,sha256=DLDQBVlM5oYOp-S9i1GDq-rRwaNv1dutx241xcHbK3w,112
+risk/__init__.py,sha256=oPfiZjsrydptQnR_sNyr6_C1nGrBvXcy5Kv5O15RTEc,112
 risk/constants.py,sha256=XInRaH78Slnw_sWgAsBFbUHkyA0h0jL0DKGuQNbOvjM,550
 risk/risk.py,sha256=PONl5tzN5DSVUf4MgczfOvzGV-5JoAOLTQ6YWl10mZ8,20697
 risk/annotations/__init__.py,sha256=vUpVvMRE5if01Ic8QY6M2Ae3EFGJHdugEe9PdEkAW4Y,138
@@ -15,7 +15,7 @@ risk/network/__init__.py,sha256=iEPeJdZfqp0toxtbElryB8jbz9_t_k4QQ3iDvKE8C_0,126
 risk/network/geometry.py,sha256=H1yGVVqgbfpzBzJwEheDLfvGLSA284jGQQTn612L4Vc,6759
 risk/network/graph.py,sha256=scPFQIJjioup1FjQLyxNrAB17RmskY9MmvoFHrMlqNI,13135
 risk/network/io.py,sha256=gG50kOknO-D3HkW1HsbHMkTMvjUtn3l4W4Jwd-rXNr8,21202
-risk/network/plot.py,sha256=4zcFJWZgGrj7AG1crRuwGpzzjjHXjQ8Eh5VjlkOQblE,60747
+risk/network/plot.py,sha256=963dBReKAfJsgwkqcTMWNIEXFZ2KezqXzR6tjFDnFfc,61747
 risk/stats/__init__.py,sha256=e-BE_Dr_jgiK6hKM-T-tlG4yvHnId8e5qjnM0pdwNVc,230
 risk/stats/fisher_exact.py,sha256=-bPwzu76-ob0HzrTV20mXUTot7v-MLuqFaAoab-QxPg,4966
 risk/stats/hypergeom.py,sha256=lrIFdhCWRjvM4apYw1MlOKqT_IY5OjtCwrjdtJdt6Tg,4954
@@ -23,8 +23,8 @@ risk/stats/stats.py,sha256=kvShov-94W6ffgDUTb522vB9hDJQSyTsYif_UIaFfSM,7059
 risk/stats/permutation/__init__.py,sha256=neJp7FENC-zg_CGOXqv-iIvz1r5XUKI9Ruxhmq7kDOI,105
 risk/stats/permutation/permutation.py,sha256=qLWdwxEY6nmkYPxpM8HLDcd2mbqYv9Qr7CKtJvhLqIM,9220
 risk/stats/permutation/test_functions.py,sha256=HuDIM-V1jkkfE1rlaIqrWWBSKZt3dQ1f-YEDjWpnLSE,2343
-risk_network-0.0.6b7.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
-risk_network-0.0.6b7.dist-info/METADATA,sha256=yiCOKKWr1cByfyrssz1g0LLSYLfvUr7XziphQPe2IkA,43142
-risk_network-0.0.6b7.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
-risk_network-0.0.6b7.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
-risk_network-0.0.6b7.dist-info/RECORD,,
+risk_network-0.0.6b8.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
+risk_network-0.0.6b8.dist-info/METADATA,sha256=n_jY1uEyX-lqf-BnQsz06e_kddid87kku6OShmoCfwk,43142
+risk_network-0.0.6b8.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
+risk_network-0.0.6b8.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
+risk_network-0.0.6b8.dist-info/RECORD,,