risk-network 0.0.5b5__py3-none-any.whl → 0.0.5b6__py3-none-any.whl

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Files changed (8) hide show
  1. risk/__init__.py +1 -1
  2. risk/constants.py +2 -2
  3. risk/network/plot.py +3 -2
  4. {risk_network-0.0.5b5.dist-info → risk_network-0.0.5b6.dist-info}/METADATA +1 -1
  5. {risk_network-0.0.5b5.dist-info → risk_network-0.0.5b6.dist-info}/RECORD +8 -8
  6. {risk_network-0.0.5b5.dist-info → risk_network-0.0.5b6.dist-info}/LICENSE +0 -0
  7. {risk_network-0.0.5b5.dist-info → risk_network-0.0.5b6.dist-info}/WHEEL +0 -0
  8. {risk_network-0.0.5b5.dist-info → risk_network-0.0.5b6.dist-info}/top_level.txt +0 -0
risk/__init__.py CHANGED
@@ -7,4 +7,4 @@ RISK: RISK Infers Spatial Kinships
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  from risk.risk import RISK
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- __version__ = "0.0.5-beta.5"
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+ __version__ = "0.0.5-beta.6"
risk/constants.py CHANGED
@@ -3,6 +3,8 @@ risk/constants
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  ~~~~~~~~~~~~~~
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  """
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+ GROUP_LINKAGE_METHODS = ["single", "complete", "average", "weighted", "centroid", "median", "ward"]
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+
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  GROUP_DISTANCE_METRICS = [
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  "braycurtis",
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  "canberra",
@@ -27,5 +29,3 @@ GROUP_DISTANCE_METRICS = [
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  "sqeuclidean",
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  "yule",
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  ]
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-
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- GROUP_LINKAGE_METHODS = ["single", "complete", "average", "weighted", "centroid", "median", "ward"]
risk/network/plot.py CHANGED
@@ -494,6 +494,7 @@ class NetworkPlotter:
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  if max_labels is not None and max_labels < len(filtered_domain_centroids):
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  step = len(filtered_domain_centroids) / max_labels
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  selected_indices = [int(i * step) for i in range(max_labels)]
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+ # Filter the centroids, terms, and valid_indices to only use the selected indices
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  filtered_domain_centroids = {
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  k: v
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  for i, (k, v) in enumerate(filtered_domain_centroids.items())
@@ -504,8 +505,8 @@ class NetworkPlotter:
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  for i, (k, v) in enumerate(filtered_domain_terms.items())
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  if i in selected_indices
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  }
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- fontcolor = fontcolor[selected_indices]
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- arrow_color = arrow_color[selected_indices]
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+ # Update valid_indices to match selected indices
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+ valid_indices = [valid_indices[i] for i in selected_indices]
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  # Calculate the bounding box around the network
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  center, radius = _calculate_bounding_box(
{risk_network-0.0.5b5.dist-info → risk_network-0.0.5b6.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: risk-network
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- Version: 0.0.5b5
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+ Version: 0.0.5b6
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  Summary: A Python package for biological network analysis
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  Author: Ira Horecka
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  Author-email: Ira Horecka <ira89@icloud.com>
{risk_network-0.0.5b5.dist-info → risk_network-0.0.5b6.dist-info}/RECORD RENAMED
@@ -1,5 +1,5 @@
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- risk/__init__.py,sha256=zGjRj03AbzDx0VGLJyR7TPzNLA1XQ5eLF7gbAKK507o,112
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- risk/constants.py,sha256=AICk3x5qRQhls_ijTb4VdbdxU6mZ1aLGbAjLEdBwfJI,550
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+ risk/__init__.py,sha256=UDR_mfSH0Yt17WiBlUHBj2-WkPQBIs6qKklXCo37n74,112
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+ risk/constants.py,sha256=XInRaH78Slnw_sWgAsBFbUHkyA0h0jL0DKGuQNbOvjM,550
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  risk/risk.py,sha256=UYM_Pf2Db-lbf4O5T2v5zKutz_GLXK-f43PgYT6xRyY,21328
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  risk/annotations/__init__.py,sha256=vUpVvMRE5if01Ic8QY6M2Ae3EFGJHdugEe9PdEkAW4Y,138
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  risk/annotations/annotations.py,sha256=DRUTdGzMdqo62NWSapBUksbvPr9CrzD76qtOcxeNKmo,10554
@@ -15,7 +15,7 @@ risk/network/__init__.py,sha256=iEPeJdZfqp0toxtbElryB8jbz9_t_k4QQ3iDvKE8C_0,126
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  risk/network/geometry.py,sha256=H1yGVVqgbfpzBzJwEheDLfvGLSA284jGQQTn612L4Vc,6759
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  risk/network/graph.py,sha256=DTjNRQwgQbt6jJYDBHm7sgrdbZUDLL4HiZpdixkSI7Y,12433
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  risk/network/io.py,sha256=otiRG6uT6HLgbbJql7X2wjYxab8OFJSgRoWJlcDoyu4,20291
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- risk/network/plot.py,sha256=rg4pB0sndOnoayeNZSu4sU3sQ2P8x9ksE4XRTRP2HPM,40942
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+ risk/network/plot.py,sha256=XB-fH67SqIm3bonFj_UvbO85725Zp1z0Ug6LblDEUYo,41062
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  risk/stats/__init__.py,sha256=e-BE_Dr_jgiK6hKM-T-tlG4yvHnId8e5qjnM0pdwNVc,230
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  risk/stats/fisher_exact.py,sha256=-bPwzu76-ob0HzrTV20mXUTot7v-MLuqFaAoab-QxPg,4966
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  risk/stats/hypergeom.py,sha256=lrIFdhCWRjvM4apYw1MlOKqT_IY5OjtCwrjdtJdt6Tg,4954
@@ -23,8 +23,8 @@ risk/stats/stats.py,sha256=kvShov-94W6ffgDUTb522vB9hDJQSyTsYif_UIaFfSM,7059
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  risk/stats/permutation/__init__.py,sha256=neJp7FENC-zg_CGOXqv-iIvz1r5XUKI9Ruxhmq7kDOI,105
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  risk/stats/permutation/permutation.py,sha256=qLWdwxEY6nmkYPxpM8HLDcd2mbqYv9Qr7CKtJvhLqIM,9220
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  risk/stats/permutation/test_functions.py,sha256=HuDIM-V1jkkfE1rlaIqrWWBSKZt3dQ1f-YEDjWpnLSE,2343
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- risk_network-0.0.5b5.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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- risk_network-0.0.5b5.dist-info/METADATA,sha256=qSRqHP8c46IzvZU--rO7eUeir3LErWx98mPIbh0Q_c4,43236
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- risk_network-0.0.5b5.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
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- risk_network-0.0.5b5.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
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- risk_network-0.0.5b5.dist-info/RECORD,,
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+ risk_network-0.0.5b6.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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+ risk_network-0.0.5b6.dist-info/METADATA,sha256=QbGxhcKULWkZ064qoWmSI43caZIrvaXostHJqCnezwc,43236
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+ risk_network-0.0.5b6.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
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+ risk_network-0.0.5b6.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
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+ risk_network-0.0.5b6.dist-info/RECORD,,