risk-network 0.0.5b2__py3-none-any.whl → 0.0.5b3__py3-none-any.whl

risk/__init__.py

@@ -7,4 +7,4 @@ RISK: RISK Infers Spatial Kinships
 
 from risk.risk import RISK
 
-__version__ = "0.0.5-beta.2"
+__version__ = "0.0.5-beta.3"

risk/network/plot.py

@@ -413,6 +413,8 @@ class NetworkPlotter:
         max_labels: Union[int, None] = None,
         max_words: int = 10,
         min_words: int = 1,
+        max_word_length: int = 20,
+        min_word_length: int = 1,
         words_to_omit: Union[List[str], None] = None,
     ) -> None:
         """Annotate the network graph with labels for different domains, positioned around the network for clarity.
@@ -428,6 +430,8 @@ class NetworkPlotter:
             max_labels (int, optional): Maximum number of labels to plot. Defaults to None (no limit).
             max_words (int, optional): Maximum number of words in a label. Defaults to 10.
             min_words (int, optional): Minimum number of words required to display a label. Defaults to 1.
+            max_word_length (int, optional): Maximum number of characters in a word to display. Defaults to 20.
+            min_word_length (int, optional): Minimum number of characters in a word to display. Defaults to 1.
             words_to_omit (List[str], optional): List of words to omit from the labels. Defaults to None.
         """
         # Log the plotting parameters
@@ -442,7 +446,9 @@ class NetworkPlotter:
             label_max_labels=max_labels,
             label_max_words=max_words,
             label_min_words=min_words,
-            label_words_to_omit=words_to_omit,  # Log words_to_omit parameter
+            label_max_word_length=max_word_length,
+            label_min_word_length=min_word_length,
+            label_words_to_omit=words_to_omit,
         )
 
         # Convert color strings to RGBA arrays if necessary
@@ -471,13 +477,15 @@ class NetworkPlotter:
             # Remove words_to_omit
             if words_to_omit:
                 terms = [term for term in terms if term.lower() not in words_to_omit]
+            # Filter words based on length
+            terms = [term for term in terms if min_word_length <= len(term) <= max_word_length]
             # Trim to max_words
             terms = terms[:max_words]
             # Check if the domain passes the word count condition
             if len(terms) >= min_words:
                 # Add to filtered_domain_centroids
                 filtered_domain_centroids[domain] = centroid
-                # Store the trimmed terms
+                # Store the filtered and trimmed terms
                 filtered_domain_terms[domain] = " ".join(terms)
                 # Keep track of the valid index
                 valid_indices.append(idx)

{risk_network-0.0.5b2.dist-info → risk_network-0.0.5b3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.5b2
+Version: 0.0.5b3
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

{risk_network-0.0.5b2.dist-info → risk_network-0.0.5b3.dist-info}/RECORD

@@ -1,4 +1,4 @@
-risk/__init__.py,sha256=g5Fqdi0t7DMMUt-AIDs34tPprO6samWzfE57y5gp5Tg,112
+risk/__init__.py,sha256=hkNuyHvspGpQZXzClmw2D5DznJwi1PUZ7T57uemJkcY,112
 risk/constants.py,sha256=AICk3x5qRQhls_ijTb4VdbdxU6mZ1aLGbAjLEdBwfJI,550
 risk/risk.py,sha256=UYM_Pf2Db-lbf4O5T2v5zKutz_GLXK-f43PgYT6xRyY,21328
 risk/annotations/__init__.py,sha256=vUpVvMRE5if01Ic8QY6M2Ae3EFGJHdugEe9PdEkAW4Y,138
@@ -15,7 +15,7 @@ risk/network/__init__.py,sha256=iEPeJdZfqp0toxtbElryB8jbz9_t_k4QQ3iDvKE8C_0,126
 risk/network/geometry.py,sha256=H1yGVVqgbfpzBzJwEheDLfvGLSA284jGQQTn612L4Vc,6759
 risk/network/graph.py,sha256=F_SY7nZev6XZuHwkJnVdeow-oMSmR4u8AUiFCrh6yvk,11543
 risk/network/io.py,sha256=otiRG6uT6HLgbbJql7X2wjYxab8OFJSgRoWJlcDoyu4,20291
-risk/network/plot.py,sha256=HBF8uQVNddU6v_vLWHDvhw2YeKQ1zkNR1SINd-KGk3Q,40267
+risk/network/plot.py,sha256=ZABvLKr1ORCWWnHymRJz6g8z7v5kCKsMThUSLAKUCtU,40782
 risk/stats/__init__.py,sha256=e-BE_Dr_jgiK6hKM-T-tlG4yvHnId8e5qjnM0pdwNVc,230
 risk/stats/fisher_exact.py,sha256=-bPwzu76-ob0HzrTV20mXUTot7v-MLuqFaAoab-QxPg,4966
 risk/stats/hypergeom.py,sha256=lrIFdhCWRjvM4apYw1MlOKqT_IY5OjtCwrjdtJdt6Tg,4954
@@ -23,8 +23,8 @@ risk/stats/stats.py,sha256=kvShov-94W6ffgDUTb522vB9hDJQSyTsYif_UIaFfSM,7059
 risk/stats/permutation/__init__.py,sha256=neJp7FENC-zg_CGOXqv-iIvz1r5XUKI9Ruxhmq7kDOI,105
 risk/stats/permutation/permutation.py,sha256=qLWdwxEY6nmkYPxpM8HLDcd2mbqYv9Qr7CKtJvhLqIM,9220
 risk/stats/permutation/test_functions.py,sha256=HuDIM-V1jkkfE1rlaIqrWWBSKZt3dQ1f-YEDjWpnLSE,2343
-risk_network-0.0.5b2.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
-risk_network-0.0.5b2.dist-info/METADATA,sha256=YYcItoAoouEEdFmBo8DsvAw3gmp2M22RfNNSYaSYjWs,43236
-risk_network-0.0.5b2.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
-risk_network-0.0.5b2.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
-risk_network-0.0.5b2.dist-info/RECORD,,
+risk_network-0.0.5b3.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
+risk_network-0.0.5b3.dist-info/METADATA,sha256=189cCFcKnA56wLM1qZ4XcJfkPY6NfZYXyxUYeNwhbas,43236
+risk_network-0.0.5b3.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
+risk_network-0.0.5b3.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
+risk_network-0.0.5b3.dist-info/RECORD,,