risk-network 0.0.4b3__py3-none-any.whl → 0.0.5b1__py3-none-any.whl

risk/__init__.py

@@ -2,9 +2,9 @@
 risk
 ~~~~
 
-RISK: RISK Infers Spatial Kinship
+RISK: RISK Infers Spatial Kinships
 """
 
 from risk.risk import RISK
 
-__version__ = "0.0.4-beta.3"
+__version__ = "0.0.5-beta.1"

risk/network/plot.py

@@ -33,6 +33,7 @@ class NetworkPlotter:
         plot_outline: bool = True,
         outline_color: str = "black",
         outline_scale: float = 1.0,
+        linestyle: str = "dashed",
     ) -> None:
         """Initialize the NetworkPlotter with a NetworkGraph object and plotting parameters.
 
@@ -43,11 +44,18 @@ class NetworkPlotter:
             plot_outline (bool, optional): Whether to plot the network perimeter circle. Defaults to True.
             outline_color (str, optional): Color of the network perimeter circle. Defaults to "black".
             outline_scale (float, optional): Outline scaling factor for the perimeter diameter. Defaults to 1.0.
+            linestyle (str): Line style for the network perimeter circle (e.g., dashed, solid). Defaults to "dashed".
         """
         self.graph = graph
         # Initialize the plot with the specified parameters
         self.ax = self._initialize_plot(
-            graph, figsize, background_color, plot_outline, outline_color, outline_scale
+            graph,
+            figsize,
+            background_color,
+            plot_outline,
+            outline_color,
+            outline_scale,
+            linestyle,
         )
 
     def _initialize_plot(
@@ -58,6 +66,7 @@ class NetworkPlotter:
         plot_outline: bool,
         outline_color: str,
         outline_scale: float,
+        linestyle: str,
     ) -> plt.Axes:
         """Set up the plot with figure size, optional circle perimeter, and background color.
 
@@ -68,6 +77,7 @@ class NetworkPlotter:
             plot_outline (bool): Whether to plot the network perimeter circle.
             outline_color (str): Color of the network perimeter circle.
             outline_scale (float): Outline scaling factor for the perimeter diameter.
+            linestyle (str): Line style for the network perimeter circle (e.g., dashed, solid).
 
         Returns:
             plt.Axes: The axis object for the plot.
@@ -87,7 +97,7 @@ class NetworkPlotter:
             circle = plt.Circle(
                 center,
                 scaled_radius,
-                linestyle="--",
+                linestyle=linestyle,  # Use the linestyle argument here
                 color=outline_color,
                 fill=False,
                 linewidth=1.5,

risk/risk.py

@@ -352,6 +352,7 @@ class RISK(NetworkIO, AnnotationsIO):
         plot_outline: bool = True,
         outline_color: str = "black",
         outline_scale: float = 1.00,
+        linestyle: str = "dashed",
     ) -> NetworkPlotter:
         """Get a NetworkPlotter object for plotting.
 
@@ -362,6 +363,7 @@ class RISK(NetworkIO, AnnotationsIO):
             plot_outline (bool, optional): Whether to plot the network outline. Defaults to True.
             outline_color (str, optional): Color of the outline. Defaults to "black".
             outline_scale (float, optional): Scaling factor for the outline. Defaults to 1.00.
+            linestyle (str): Line style for the network perimeter circle (e.g., dashed, solid). Defaults to "dashed".
 
         Returns:
             NetworkPlotter: A NetworkPlotter object configured with the given parameters.
@@ -374,6 +376,7 @@ class RISK(NetworkIO, AnnotationsIO):
             plot_outline=plot_outline,
             outline_color=outline_color,
             outline_scale=outline_scale,
+            linestyle=linestyle,
         )
 
         # Initialize and return a NetworkPlotter object
@@ -384,6 +387,7 @@ class RISK(NetworkIO, AnnotationsIO):
             plot_outline=plot_outline,
             outline_color=outline_color,
             outline_scale=outline_scale,
+            linestyle=linestyle,
         )
 
     def _load_neighborhoods(

{risk_network-0.0.4b3.dist-info → risk_network-0.0.5b1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.4b3
+Version: 0.0.5b1
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

{risk_network-0.0.4b3.dist-info → risk_network-0.0.5b1.dist-info}/RECORD

@@ -1,6 +1,6 @@
-risk/__init__.py,sha256=h9TG0BQ8u5D9jZ6S4Hr0GsilUhb1gnrisxLtvMl2mbk,111
+risk/__init__.py,sha256=MiqPt6LZ6Qw1gZHCOHv-cEkNw-RNuZLJeI4IW6hDCQU,112
 risk/constants.py,sha256=AICk3x5qRQhls_ijTb4VdbdxU6mZ1aLGbAjLEdBwfJI,550
-risk/risk.py,sha256=4Y-fViqdK9gvxEjJRYsV_7gbN0kh7eiTwD8eesd_M6o,21109
+risk/risk.py,sha256=UYM_Pf2Db-lbf4O5T2v5zKutz_GLXK-f43PgYT6xRyY,21328
 risk/annotations/__init__.py,sha256=vUpVvMRE5if01Ic8QY6M2Ae3EFGJHdugEe9PdEkAW4Y,138
 risk/annotations/annotations.py,sha256=t4aLwROCFHcqk8g-viuwkFG--HqVpVN_2yVVcjhg6wI,10534
 risk/annotations/io.py,sha256=TMicRACfY8bNtmbvVrxHoh8zkOVLOIhZwWrpxUlR28Q,7988
@@ -15,7 +15,7 @@ risk/network/__init__.py,sha256=iEPeJdZfqp0toxtbElryB8jbz9_t_k4QQ3iDvKE8C_0,126
 risk/network/geometry.py,sha256=H1yGVVqgbfpzBzJwEheDLfvGLSA284jGQQTn612L4Vc,6759
 risk/network/graph.py,sha256=m3bFWU5528OEm246LPG5XP3l_30vaBiJv4AO4iq0pSA,11552
 risk/network/io.py,sha256=otiRG6uT6HLgbbJql7X2wjYxab8OFJSgRoWJlcDoyu4,20291
-risk/network/plot.py,sha256=yGmuQXcju2cWUcyJJALtNmIPPCFS2yusULJXka8263I,40080
+risk/network/plot.py,sha256=MIXbeG0mQq53nX0BvoCpJBcPLICJX_NyR34B_HzEa2Y,40477
 risk/stats/__init__.py,sha256=e-BE_Dr_jgiK6hKM-T-tlG4yvHnId8e5qjnM0pdwNVc,230
 risk/stats/fisher_exact.py,sha256=-bPwzu76-ob0HzrTV20mXUTot7v-MLuqFaAoab-QxPg,4966
 risk/stats/hypergeom.py,sha256=lrIFdhCWRjvM4apYw1MlOKqT_IY5OjtCwrjdtJdt6Tg,4954
@@ -23,8 +23,8 @@ risk/stats/stats.py,sha256=kvShov-94W6ffgDUTb522vB9hDJQSyTsYif_UIaFfSM,7059
 risk/stats/permutation/__init__.py,sha256=neJp7FENC-zg_CGOXqv-iIvz1r5XUKI9Ruxhmq7kDOI,105
 risk/stats/permutation/permutation.py,sha256=qLWdwxEY6nmkYPxpM8HLDcd2mbqYv9Qr7CKtJvhLqIM,9220
 risk/stats/permutation/test_functions.py,sha256=HuDIM-V1jkkfE1rlaIqrWWBSKZt3dQ1f-YEDjWpnLSE,2343
-risk_network-0.0.4b3.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
-risk_network-0.0.4b3.dist-info/METADATA,sha256=yjXG21NrHagGZgVl-T1ySHLGsItvM4xBH9j9xiQGGJ4,43236
-risk_network-0.0.4b3.dist-info/WHEEL,sha256=UvcQYKBHoFqaQd6LKyqHw9fxEolWLQnlzP0h_LgJAfI,91
-risk_network-0.0.4b3.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
-risk_network-0.0.4b3.dist-info/RECORD,,
+risk_network-0.0.5b1.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
+risk_network-0.0.5b1.dist-info/METADATA,sha256=-cF8mh-xTmEBsKn-xVVNIo_5YG2Njz69186Pu-xE43U,43236
+risk_network-0.0.5b1.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
+risk_network-0.0.5b1.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
+risk_network-0.0.5b1.dist-info/RECORD,,

{risk_network-0.0.4b3.dist-info → risk_network-0.0.5b1.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (74.0.0)
+Generator: setuptools (74.1.2)
 Root-Is-Purelib: true
 Tag: py3-none-any