risk-network 0.0.3b3__py3-none-any.whl → 0.0.3b4__py3-none-any.whl

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Files changed (7) hide show
  1. risk/__init__.py +1 -1
  2. risk/stats/stats.py +3 -1
  3. {risk_network-0.0.3b3.dist-info → risk_network-0.0.3b4.dist-info}/METADATA +1 -1
  4. {risk_network-0.0.3b3.dist-info → risk_network-0.0.3b4.dist-info}/RECORD +7 -7
  5. {risk_network-0.0.3b3.dist-info → risk_network-0.0.3b4.dist-info}/LICENSE +0 -0
  6. {risk_network-0.0.3b3.dist-info → risk_network-0.0.3b4.dist-info}/WHEEL +0 -0
  7. {risk_network-0.0.3b3.dist-info → risk_network-0.0.3b4.dist-info}/top_level.txt +0 -0
risk/__init__.py CHANGED
@@ -10,4 +10,4 @@ RISK: RISK Infers Spatial Kinship
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  from risk.risk import RISK
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- __version__ = "0.0.3-beta.3"
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+ __version__ = "0.0.3-beta.4"
risk/stats/stats.py CHANGED
@@ -153,9 +153,11 @@ def _run_permutation_test(
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  results = pool.starmap_async(_permutation_process_subset, params_list)
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  # Update progress bar based on progress_counter
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+ # NOTE: Waiting for results to be ready while updating progress bar gives a big improvement
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+ # in performance, especially for large number of permutations and workers
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  while not results.ready():
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  progress.update(progress_counter.value - progress.n)
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- results.wait(0.1)
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+ results.wait(1) # Wait for 1 second
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  # Ensure progress bar reaches 100%
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  progress.update(total_progress - progress.n)
{risk_network-0.0.3b3.dist-info → risk_network-0.0.3b4.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: risk-network
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- Version: 0.0.3b3
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+ Version: 0.0.3b4
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  Summary: A Python package for biological network analysis
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  Author: Ira Horecka
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  Author-email: Ira Horecka <ira89@icloud.com>
{risk_network-0.0.3b3.dist-info → risk_network-0.0.3b4.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- risk/__init__.py,sha256=RJu5X2UMuCRnZae_KH4Fc7_o_P4sSfTDEBowiVZ2Go4,122
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+ risk/__init__.py,sha256=7JTz-sr7kIgP1-2x6p8-HirKCr90zZTsy-gIbKdeYMw,122
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  risk/constants.py,sha256=AICk3x5qRQhls_ijTb4VdbdxU6mZ1aLGbAjLEdBwfJI,550
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  risk/risk.py,sha256=cWpYogZ-vma4ZZjewVNRMzb2TqHv8YABuzP2brXpOqo,16399
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  risk/annotations/__init__.py,sha256=vUpVvMRE5if01Ic8QY6M2Ae3EFGJHdugEe9PdEkAW4Y,138
@@ -18,9 +18,9 @@ risk/network/io.py,sha256=KmdrsDZe-ZT4O59NYZM_nQd8Ew9qpbzQcqWS_PaE7eA,12559
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  risk/network/plot.py,sha256=fy21X677xqJPFkn564Jegxy05C9x0pJXovd5fm3NZ4Q,34554
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  risk/stats/__init__.py,sha256=4s9gdJo5B1G_cQc0iMoeIBt5OrQNXkdtNXkAMFQkLxc,103
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  risk/stats/permutation.py,sha256=xgaZbaxo57t_FzPlpcb2nsq8oCzc_wj-zAm-xj3P2dA,3404
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- risk/stats/stats.py,sha256=_3Fj5H8Nml4cExvLg7Mt_i1HCLAJJcJSDiiSzr3uFlo,15798
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- risk_network-0.0.3b3.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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- risk_network-0.0.3b3.dist-info/METADATA,sha256=4zGYMG1NL48Udn8jYkT8VCYDEEAuN5ycXBpvmxvdHtw,43256
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- risk_network-0.0.3b3.dist-info/WHEEL,sha256=HiCZjzuy6Dw0hdX5R3LCFPDmFS4BWl8H-8W39XfmgX4,91
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- risk_network-0.0.3b3.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
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- risk_network-0.0.3b3.dist-info/RECORD,,
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+ risk/stats/stats.py,sha256=Yu9LMSUtCRkg-h0ErJurb-rkajHgTvdzBcymHldJs5k,16007
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+ risk_network-0.0.3b4.dist-info/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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+ risk_network-0.0.3b4.dist-info/METADATA,sha256=_xhdIlmS0XAYJWRI1yjQppksLevhfTX_wFjKzX5hf9Q,43256
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+ risk_network-0.0.3b4.dist-info/WHEEL,sha256=HiCZjzuy6Dw0hdX5R3LCFPDmFS4BWl8H-8W39XfmgX4,91
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+ risk_network-0.0.3b4.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
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+ risk_network-0.0.3b4.dist-info/RECORD,,