risk-network 0.0.13b4__py3-none-any.whl → 0.0.14b0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. risk/__init__.py +3 -2
  2. risk/_annotation/__init__.py +10 -0
  3. risk/{annotation/annotation.py → _annotation/_annotation.py} +18 -11
  4. risk/{annotation/io.py → _annotation/_io.py} +22 -14
  5. risk/{annotation/nltk_setup.py → _annotation/_nltk_setup.py} +7 -5
  6. risk/_log/__init__.py +11 -0
  7. risk/{log/console.py → _log/_console.py} +22 -12
  8. risk/{log/parameters.py → _log/_parameters.py} +25 -14
  9. risk/_neighborhoods/__init__.py +8 -0
  10. risk/{neighborhoods/api.py → _neighborhoods/_api.py} +23 -14
  11. risk/{neighborhoods/community.py → _neighborhoods/_community.py} +19 -11
  12. risk/{neighborhoods/domains.py → _neighborhoods/_domains.py} +15 -9
  13. risk/{neighborhoods/neighborhoods.py → _neighborhoods/_neighborhoods.py} +24 -35
  14. risk/_neighborhoods/_stats/__init__.py +13 -0
  15. risk/_neighborhoods/_stats/_permutation/__init__.py +6 -0
  16. risk/{neighborhoods/stats/permutation/permutation.py → _neighborhoods/_stats/_permutation/_permutation.py} +9 -6
  17. risk/{neighborhoods/stats/permutation/test_functions.py → _neighborhoods/_stats/_permutation/_test_functions.py} +6 -4
  18. risk/{neighborhoods/stats/tests.py → _neighborhoods/_stats/_tests.py} +12 -7
  19. risk/_network/__init__.py +8 -0
  20. risk/_network/_graph/__init__.py +7 -0
  21. risk/{network/graph/api.py → _network/_graph/_api.py} +13 -10
  22. risk/{network/graph/graph.py → _network/_graph/_graph.py} +24 -13
  23. risk/{network/graph/stats.py → _network/_graph/_stats.py} +8 -5
  24. risk/{network/graph/summary.py → _network/_graph/_summary.py} +21 -12
  25. risk/{network/io.py → _network/_io.py} +168 -126
  26. risk/_network/_plotter/__init__.py +6 -0
  27. risk/{network/plotter/api.py → _network/_plotter/_api.py} +9 -7
  28. risk/{network/plotter/canvas.py → _network/_plotter/_canvas.py} +14 -10
  29. risk/{network/plotter/contour.py → _network/_plotter/_contour.py} +17 -11
  30. risk/{network/plotter/labels.py → _network/_plotter/_labels.py} +38 -23
  31. risk/{network/plotter/network.py → _network/_plotter/_network.py} +17 -11
  32. risk/{network/plotter/plotter.py → _network/_plotter/_plotter.py} +19 -15
  33. risk/_network/_plotter/_utils/__init__.py +7 -0
  34. risk/{network/plotter/utils/colors.py → _network/_plotter/_utils/_colors.py} +19 -11
  35. risk/{network/plotter/utils/layout.py → _network/_plotter/_utils/_layout.py} +8 -5
  36. risk/{risk.py → _risk.py} +11 -11
  37. {risk_network-0.0.13b4.dist-info → risk_network-0.0.14b0.dist-info}/METADATA +1 -1
  38. risk_network-0.0.14b0.dist-info/RECORD +41 -0
  39. {risk_network-0.0.13b4.dist-info → risk_network-0.0.14b0.dist-info}/WHEEL +1 -1
  40. risk/annotation/__init__.py +0 -10
  41. risk/log/__init__.py +0 -11
  42. risk/neighborhoods/__init__.py +0 -7
  43. risk/neighborhoods/stats/__init__.py +0 -13
  44. risk/neighborhoods/stats/permutation/__init__.py +0 -6
  45. risk/network/__init__.py +0 -4
  46. risk/network/graph/__init__.py +0 -4
  47. risk/network/plotter/__init__.py +0 -4
  48. risk_network-0.0.13b4.dist-info/RECORD +0 -40
  49. {risk_network-0.0.13b4.dist-info → risk_network-0.0.14b0.dist-info}/licenses/LICENSE +0 -0
  50. {risk_network-0.0.13b4.dist-info → risk_network-0.0.14b0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,41 @@
1
+ risk/__init__.py,sha256=4gUMRlMdNJ2feLptoxyeWymcTnqlyoExMrazTwzyfrs,143
2
+ risk/_risk.py,sha256=VULCdM41BlWKM1ou4Qc579ffZ9dMZkfhAwKYgbaEeKM,1054
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+ risk/_annotation/__init__.py,sha256=zr7w1DHkmvrkKFGKdPhrcvZHV-xsfd5TZOaWtFiP4Dc,164
4
+ risk/_annotation/_annotation.py,sha256=03vcnkdi4HGH5UUyokUyOdyyjXOLoKSmLFuK7VAl41c,15174
5
+ risk/_annotation/_io.py,sha256=xic3dkEA54X82HbyWfCiXrUpAhPWFPBZ69R8jw31omQ,12457
6
+ risk/_annotation/_nltk_setup.py,sha256=aHHnElLOKiouVDrZ3uON0CSFmBxvzmYfjYPi07v2rJM,3584
7
+ risk/_log/__init__.py,sha256=LX6BsfcGOH0RbAdQaUmIU-LVMmArDdKwn0jFtj45FYo,205
8
+ risk/_log/_console.py,sha256=1jSFzY3w0-vVqIBCgc-IhyJPNT6vRg8GSGxhyw_D9MI,4653
9
+ risk/_log/_parameters.py,sha256=8FkeeBtULDFVw3UijLArK-G3OIjy6YXyRXmPPckK7fU,5893
10
+ risk/_neighborhoods/__init__.py,sha256=eKwjpEUKSUmAirRZ_qPTVF7MLkvhCn_fulPVq158wM8,185
11
+ risk/_neighborhoods/_api.py,sha256=6vt25y38wSvEhMvNxy9Rl-CrQc9ARSuvGwexWagg5z0,23344
12
+ risk/_neighborhoods/_community.py,sha256=Tr-EHO91EWbMmNr_z21UCngiqWOlWIqcjwBig_VXI8c,17850
13
+ risk/_neighborhoods/_domains.py,sha256=He8G2-E9-yYQB8ChUtMFr51HVlfRj5EaxGu3sGVNUCo,14630
14
+ risk/_neighborhoods/_neighborhoods.py,sha256=9H7BickJx9GdnOo5d5wpdtXkcWyvzq2w6FAy1rwLBtk,20614
15
+ risk/_neighborhoods/_stats/__init__.py,sha256=nL83A3unzpCTzRDPanCiqU1RsKPJJNDe46S9igoe3pg,264
16
+ risk/_neighborhoods/_stats/_tests.py,sha256=-ioHdyrsgW63YnypKFpanatauuKrF3LT7aMZ3b6otrU,12091
17
+ risk/_neighborhoods/_stats/_permutation/__init__.py,sha256=nfTaW29CK8OZCdFnpMVlHnFaqr1E4AZp6mvhlUazHXM,140
18
+ risk/_neighborhoods/_stats/_permutation/_permutation.py,sha256=e5qVuYWGhiAn5Jv8VILk-WYMOO4km48cGdRYTOl355M,10661
19
+ risk/_neighborhoods/_stats/_permutation/_test_functions.py,sha256=lGI_MkdbW4UHI0jWN_T1OattRjXrq_qmzAmOfels670,3165
20
+ risk/_network/__init__.py,sha256=YrAMfhL0CMWQb3sY-mn1VxK44zZAWeFAvHrBONH9I-A,127
21
+ risk/_network/_io.py,sha256=uiYmbKVsSRr4-TsY9KvRggDghtZv8qoxXac3QYs1lTI,28750
22
+ risk/_network/_graph/__init__.py,sha256=SFgxgxUiZK4vvw6bdQ04DSMXEr8xjMaQV-Wne6wAIqM,104
23
+ risk/_network/_graph/_api.py,sha256=zH7n-ulqLcbgHdAfLu1yWErdR5G4LgSqR7DcN2qApco,8520
24
+ risk/_network/_graph/_graph.py,sha256=x2EWT_ZVwxh7m9a01yG4WMdmAxBxiaxX3CvkqP9QAXE,12486
25
+ risk/_network/_graph/_stats.py,sha256=6mxZkuL6LJlwKDsBbP22DAVkNUEhq-JZwYMKhFKD08k,7359
26
+ risk/_network/_graph/_summary.py,sha256=4eGhCArssePDg4LXr3sg5bUpNn7KFK9oPZcCz5lJKEQ,10334
27
+ risk/_network/_plotter/__init__.py,sha256=qFRtQKSBGIqmUGwmA7VPL7hTHBb9yvRIt0nLISXnwkY,84
28
+ risk/_network/_plotter/_api.py,sha256=MHZIMTlul2u-Ve5m9r-eUljI2oC3IRklNn7AVlfmzGs,1773
29
+ risk/_network/_plotter/_canvas.py,sha256=H7rPz4Gv7ED3bDHMif4cf2usdU4ifmxzXeug5A_no68,13599
30
+ risk/_network/_plotter/_contour.py,sha256=E3ILjlv-VBSbK3ClwObB84TvP1D48_B47ODXwtApjIE,15557
31
+ risk/_network/_plotter/_labels.py,sha256=8JXzEOIBQefwr1ngF-2ZYCnYLZXs2Erz-R1c28NnsL0,46915
32
+ risk/_network/_plotter/_network.py,sha256=W9eUUER9_qi1ubGaUfMp12gxAANZP-JNFKcG27I1nAk,14198
33
+ risk/_network/_plotter/_plotter.py,sha256=F2hw-spUdsXjvuG36o0YFR3Pnd-CZOHYUq4vW0Qxzlk,6011
34
+ risk/_network/_plotter/_utils/__init__.py,sha256=JXgjKiBWvXx0X2IeFnrOh5YZQGQoELbhJZ0Zh2mFEOo,211
35
+ risk/_network/_plotter/_utils/_colors.py,sha256=JCliSvz8_-TsjilaRHSEsqdXFBUYlzhXKOSRGdCm9Kw,19177
36
+ risk/_network/_plotter/_utils/_layout.py,sha256=GyGLc2U1WWUVL1Te9uPi_CLqlW_E4TImXRAL5TeA5D8,3633
37
+ risk_network-0.0.14b0.dist-info/licenses/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
38
+ risk_network-0.0.14b0.dist-info/METADATA,sha256=rshHTAf4wXudUsCwUIQpK8VZzmb5-f_c9_fYfrYXdm0,6853
39
+ risk_network-0.0.14b0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
40
+ risk_network-0.0.14b0.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
41
+ risk_network-0.0.14b0.dist-info/RECORD,,
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: setuptools (80.3.0)
2
+ Generator: setuptools (80.9.0)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
@@ -1,10 +0,0 @@
1
- """
2
- risk/annotation
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- ~~~~~~~~~~~~~~~
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- """
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-
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- from risk.annotation.annotation import (
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- define_top_annotation,
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- get_weighted_description,
9
- )
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- from risk.annotation.io import AnnotationIO
risk/log/__init__.py DELETED
@@ -1,11 +0,0 @@
1
- """
2
- risk/log
3
- ~~~~~~~~
4
- """
5
-
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- from risk.log.console import log_header, logger, set_global_verbosity
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- from risk.log.parameters import Params
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-
9
- # Initialize the global parameters logger
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- params = Params()
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- params.initialize()
@@ -1,7 +0,0 @@
1
- """
2
- risk/neighborhoods
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- ~~~~~~~~~~~~~~~~~~
4
- """
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-
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- from risk.neighborhoods.domains import define_domains, trim_domains
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- from risk.neighborhoods.neighborhoods import process_neighborhoods
@@ -1,13 +0,0 @@
1
- """
2
- risk/neighborhoods/stats
3
- ~~~~~~~~~~~~~~~~~~~~~~~~
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- """
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-
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- from risk.neighborhoods.stats.permutation import compute_permutation_test
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- from risk.neighborhoods.stats.tests import (
8
- compute_binom_test,
9
- compute_chi2_test,
10
- compute_hypergeom_test,
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- compute_poisson_test,
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- compute_zscore_test,
13
- )
@@ -1,6 +0,0 @@
1
- """
2
- risk/neighborhoods/stats/permutation
3
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- """
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-
6
- from risk.neighborhoods.stats.permutation.permutation import compute_permutation_test
risk/network/__init__.py DELETED
@@ -1,4 +0,0 @@
1
- """
2
- risk/network
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- ~~~~~~~~~~~~
4
- """
@@ -1,4 +0,0 @@
1
- """
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- risk/network/graph
3
- ~~~~~~~~~~~~~~~~~~
4
- """
@@ -1,4 +0,0 @@
1
- """
2
- risk/network/plotter
3
- ~~~~~~~~~~~~~~~~~~~~
4
- """
@@ -1,40 +0,0 @@
1
- risk/__init__.py,sha256=64n4kde42cujId1bWBqXdxznWZaSEVq1NvS_gqlvt1g,127
2
- risk/risk.py,sha256=Wjuxob5bI70Tpz9t71i05g94AQ3qXEMjfEcm5IV9HSY,1118
3
- risk/annotation/__init__.py,sha256=1EbGo41ClQb5ESTtitjOhrZhaLzzwr5aT-RYDX8w-h4,185
4
- risk/annotation/annotation.py,sha256=EExSfYbZu4EUyA5vl7EDadGefyf-sJw_UmUxgXbuKng,15151
5
- risk/annotation/io.py,sha256=Rhob9GKgdfHZIMVyaRJa15YOAPMDbqg3y_b8vckPeoM,12391
6
- risk/annotation/nltk_setup.py,sha256=14B6L56_dwIgAOC9Rl4dNd4-b-aEngUCoJP9L9kEilU,3572
7
- risk/log/__init__.py,sha256=en-hKzuFtQWos4oZd8PxJ9u9Pe5bdihiqH9-qk_5ppw,217
8
- risk/log/console.py,sha256=PgjyEvyhYLUSHXPUKEqOmxsDsfrjPICIgqo_cAHq0N8,4575
9
- risk/log/parameters.py,sha256=FnP-kdg0Kip0SyxFEn7su7BG51FbMtTfm3Rk96cnCoc,5801
10
- risk/neighborhoods/__init__.py,sha256=CNS0VNbh_IdxldXjDkPqeTrxgY4hqi_Tc_MTADW_tzQ,182
11
- risk/neighborhoods/api.py,sha256=TXbjbHfQDi2eZeD9086BBsUjhDiJq2BNEYALiGs_rPc,23299
12
- risk/neighborhoods/community.py,sha256=0YdTh6wgMLiGMdtlaD7Vu_uxOVoZ9vDBjxbkglkrTV8,17808
13
- risk/neighborhoods/domains.py,sha256=9cWcGYGALcYruvAjWKztnEZlnYyT6DSoAPP6VsgA2wQ,14601
14
- risk/neighborhoods/neighborhoods.py,sha256=ykJu2d0Z6gRCOAMyBtpWpxXQ2Dei4nOv7w3XN0LpiX8,21672
15
- risk/neighborhoods/stats/__init__.py,sha256=1evLEAa7trCWj2DapCV4vW_f0zsyKHqTsn4--E_fDPg,306
16
- risk/neighborhoods/stats/tests.py,sha256=Z14H8G2qHzM5AOhKqp4YfCOL_wp3QwzUzfeGQJOqTTU,12060
17
- risk/neighborhoods/stats/permutation/__init__.py,sha256=V-uLSoi4SIPKjSRl7rhcDR4HJ4tquAn3QxNTXH9KzK8,169
18
- risk/neighborhoods/stats/permutation/permutation.py,sha256=k9-Yw-1wWBqeD9cGcTh_d2ypqN-HzoJrcCEAR5-BK0o,10673
19
- risk/neighborhoods/stats/permutation/test_functions.py,sha256=Wuop4WDY3foGeKp-hMGc2Gdqf85s-x9BDXGB8ifp0oE,3147
20
- risk/network/__init__.py,sha256=C9GisdyJM7fizwUIipy1vC4lbry9ceqLn1iBcW0-mZg,34
21
- risk/network/io.py,sha256=oD7jZ0qrZr78OHJHDS2hj9J5FsYpqV7vJ3TNmJfC9Cg,27903
22
- risk/network/graph/__init__.py,sha256=iG6IlE8xtAyF6_NuCBUpsJrjrjd1vsXO1Ajsr0K8EA0,46
23
- risk/network/graph/api.py,sha256=gXheVl1xw7vFDHOOQdRxCFwVy4ajEJ1dk4GQxm13sCI,8528
24
- risk/network/graph/graph.py,sha256=jPNJea9JiLKedGFvSKmZ5Kf2R9go0HJkZ4wYNJwZRJI,12410
25
- risk/network/graph/stats.py,sha256=xITodchaF8Pgngynil_GM9IeMBtxuraPX-Gjp6WBEMY,7338
26
- risk/network/graph/summary.py,sha256=UZvZk5w2BZ5zs8IDfr-YYYBr2eM1wmXh0FKp_p9UdB4,10260
27
- risk/network/plotter/__init__.py,sha256=9kdeONe8NaJvJ5FO7eOdZiobqL4CeR7q2MghG4z6Kt8,50
28
- risk/network/plotter/api.py,sha256=GFP0n_0-tSdCZQd6cuaH3w55953sXCR02nwyJhAEqK4,1789
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- risk/network/plotter/canvas.py,sha256=i8i-ARLCNsHkAW3W_E63PpbEjmQLJplpqK6mSivgz4k,13610
30
- risk/network/plotter/contour.py,sha256=TJA4C9G07iFBBSuSCYGZJ6NZfXGWH8zVw0LC2eqU3JA,15540
31
- risk/network/plotter/labels.py,sha256=89Ege5NkfFMZJXw_mF-rhtIPa4-S8UKtYSkj8ty_VeQ,46805
32
- risk/network/plotter/network.py,sha256=c9rPQ5mjil0sxVQnprRaKMAUqT6PZmKiATWz0m-TvQU,14185
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- risk/network/plotter/plotter.py,sha256=WZcOrBW3vBQ_aLwv8c8pXJO8ZlyswHHHfEsiLxzEYaI,6121
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- risk/network/plotter/utils/colors.py,sha256=xZt4877ORTQqySiMh-tUGe0sXvhLbXO04iGNeBDkbbw,19144
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- risk/network/plotter/utils/layout.py,sha256=Lty16T-Q-oWwo9fXqm-nnS_dMS3BMhuFt4SFqxFC3Ng,3610
36
- risk_network-0.0.13b4.dist-info/licenses/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
37
- risk_network-0.0.13b4.dist-info/METADATA,sha256=Atc8HAHrKKIbdjfZUx4bwo5GifV3OGTrShjr0Ewd2T4,6853
38
- risk_network-0.0.13b4.dist-info/WHEEL,sha256=GHB6lJx2juba1wDgXDNlMTyM13ckjBMKf-OnwgKOCtA,91
39
- risk_network-0.0.13b4.dist-info/top_level.txt,sha256=NX7C2PFKTvC1JhVKv14DFlFAIFnKc6Lpsu1ZfxvQwVw,5
40
- risk_network-0.0.13b4.dist-info/RECORD,,