res2df 1.3.9__py3-none-any.whl → 1.3.11__py3-none-any.whl

res2df/vfp/__init__.py

@@ -2,7 +2,7 @@
 keywords in Eclipse.
 """
 
-from ._vfp import (  # noqa: F401
+from ._vfp import (
     basic_data,
     basic_data2df,
     basic_data2pyarrow,
@@ -18,3 +18,20 @@ from ._vfp import (  # noqa: F401
     vfp_main,
     vfp_reverse_main,
 )
+
+__all__ = [
+    "basic_data",
+    "basic_data2df",
+    "basic_data2pyarrow",
+    "df",
+    "df2basic_data",
+    "df2res",
+    "df2ress",
+    "dfs",
+    "fill_parser",
+    "fill_reverse_parser",
+    "pyarrow2basic_data",
+    "pyarrow_tables",
+    "vfp_main",
+    "vfp_reverse_main",
+]

res2df/vfp/_vfp.py

@@ -7,22 +7,19 @@ output both in csv format as a pandas DataFrame or in pyarrow and pyarrow.table
 import argparse
 import logging
 import sys
+from pathlib import Path
 from typing import Any
 
 import numpy as np
+
+# Needed for mypy
+import opm.io
 import pandas as pd
 import pyarrow as pa
 
-try:
-    # Needed for mypy
-
-    import opm.io
-
-    # This import is seemingly not used, but necessary for some attributes
-    # to be included in DeckItem objects.
-    from opm.io.deck import DeckKeyword  # noqa: F401
-except ImportError:
-    pass
+# This import is seemingly not used, but necessary for some attributes
+# to be included in DeckItem objects.
+from opm.io.deck import DeckKeyword  # noqa: F401
 
 from ..common import comment_formatter, write_dframe_stdout_file, write_inc_stdout_file
 from ..common import fill_reverse_parser as common_fill_reverse_parser
@@ -404,8 +401,7 @@ def df2res(
         str_vfps += "\n"
 
     if filename:
-        with open(filename, "w", encoding="utf-8") as fout:
-            fout.write(str_vfps)
+        Path(filename).write_text(str_vfps, encoding="utf-8")
 
     return str_vfps
 
@@ -484,7 +480,7 @@ def fill_reverse_parser(parser: argparse.ArgumentParser) -> argparse.ArgumentPar
     return common_fill_reverse_parser(parser, "VFPPROD, VFPINJ", "vfp.inc")
 
 
-def vfp_main(args) -> None:
+def vfp_main(args: argparse.Namespace) -> None:
     """Entry-point for module, for command line utility."""
     logger = getLogger_res2csv(__name__, vars(args))
     if args.keyword and args.keyword not in SUPPORTED_KEYWORDS:
@@ -523,7 +519,7 @@ def vfp_main(args) -> None:
             logger.info("Parsed file %s for vfp.df", args.DATAFILE)
 
 
-def vfp_reverse_main(args) -> None:
+def vfp_reverse_main(args: argparse.Namespace) -> None:
     """Entry-point for module, for command line utility for CSV to Eclipse"""
     logger = getLogger_res2csv(__name__, vars(args))
     vfp_df = pd.read_csv(args.csvfile)

res2df/vfp/_vfpcommon.py

@@ -7,22 +7,16 @@ output both in csv format as a pandas DataFrame or in pyarrow and pyarrow.table
 """
 
 import logging
-import numbers
-from typing import Any
 
 import numpy as np
-import pandas as pd
-
-try:
-    # Needed for mypy
 
-    import opm.io
+# Needed for mypy
+import opm.io
+import pandas as pd
 
-    # This import is seemingly not used, but necessary for some attributes
-    # to be included in DeckItem objects.
-    from opm.io.deck import DeckKeyword  # noqa: F401
-except ImportError:
-    pass
+# This import is seemingly not used, but necessary for some attributes
+# to be included in DeckItem objects.
+from opm.io.deck import DeckKeyword  # noqa: F401
 
 from ..common import parse_opmio_deckrecord
 
@@ -36,19 +30,18 @@ def _string2intlist(list_def_str: str) -> list[int]:
         list_def_str: String defining list of int
                       Format "[1,2,6:9]" to define list [1,2,6,7,8,9]
     """
-    list = []
+    int_list: list[int] = []
     list_def = list_def_str.strip().strip("[").strip("]")
     if list_def.strip():
         list_items = list_def.split(",") if "," in list_def else [list_def]
         for item in list_items:
             if ":" in item:
                 item_split = item.split(":")
-                for value in item_split:
-                    list.append(int(value))
+                int_list.extend(int(value) for value in item_split)
             else:
-                list.append(int(item))
+                int_list.append(int(item))
 
-    return list
+    return int_list
 
 
 def _deckrecord2list(
@@ -56,7 +49,7 @@ def _deckrecord2list(
     keyword: str,
     recordindex: int,
     recordname: str,
-) -> Any | list[float]:
+) -> list[float]:
     """
     Parse an opm.opmcommon_python.DeckRecord belonging to a certain keyword
     and return as list of numbers
@@ -68,14 +61,22 @@ def _deckrecord2list(
                      list index to the "record".
         recordname:  Name of the record
     """
-    record = parse_opmio_deckrecord(record, keyword, "records", recordindex)
+    rec_dict = parse_opmio_deckrecord(record, keyword, "records", recordindex)
 
-    values: Any | list[float]
+    values: list[float]
     # Extract interpolation ranges into lists
-    if isinstance(record.get(recordname), list):
-        values = record.get(recordname)
-    elif isinstance(record.get(recordname), numbers.Number):
-        values = [record.get(recordname)]
+    tmp_val = rec_dict.get(recordname)
+    if tmp_val is None:
+        raise KeyError(f"Missing record '{recordname}' in keyword '{keyword}'")
+    if isinstance(tmp_val, (list, tuple)):
+        try:
+            values = [float(val) for val in tmp_val]
+        except (TypeError, ValueError) as e:
+            raise ValueError(
+                f"Non-numeric value in record '{recordname}' for keyword '{keyword}'"
+            ) from e
+    elif isinstance(tmp_val, (int, float)):
+        values = [float(tmp_val)]
     else:
         raise ValueError(
             f"Keyword {keyword} and recordname {recordname} "
@@ -126,11 +127,8 @@ def _stack_vfptable2df(
         df_vfptable.insert(i, index_names_list[i], index_values_list[i])
 
     #  create multi-index for columns
-    indextuples = []
-    for index_name in index_names_list:
-        indextuples.append((index_name, "DELETE"))
-    for flowvalue in flow_values_list:
-        indextuples.append(("TAB", str(flowvalue)))
+    indextuples = [(index_name, "DELETE") for index_name in index_names_list]
+    indextuples.extend(("TAB", str(flowvalue)) for flowvalue in flow_values_list)
 
     # Set the columns to a MultiIndex, to facilitate stacking
     df_vfptable.columns = pd.MultiIndex.from_tuples(indextuples)

res2df/vfp/_vfpinj.py

@@ -395,9 +395,10 @@ def pyarrow2basic_data(pa_table: pa.Table) -> dict[str, Any]:
     """
 
     # Extract index data from colum metadata
-    thp_indices = []
-    for i in range(0, pa_table.num_columns):
-        thp_indices.append(int(pa_table.schema.field(i).metadata[b"thp_idx"]))
+    thp_indices = [
+        int(pa_table.schema.field(i).metadata[b"thp_idx"])
+        for i in range(0, pa_table.num_columns)
+    ]
 
     # Extract table data as numpy.array
     bhp_data = np.array(pa_table.columns)

res2df/wcon.py

@@ -1,16 +1,13 @@
 """Extract WCON* from a .DATA file"""
 
 import argparse
-import contextlib
 import datetime
 import logging
 
+# Needed for mypy
+import opm.io
 import pandas as pd
 
-with contextlib.suppress(ImportError):
-    # Needed for mypy
-    import opm.io
-
 from .common import (
     parse_opmio_date_rec,
     parse_opmio_deckrecord,
@@ -85,7 +82,7 @@ def fill_parser(parser: argparse.ArgumentParser) -> argparse.ArgumentParser:
     return parser
 
 
-def wcon_main(args) -> None:
+def wcon_main(args: argparse.Namespace) -> None:
     """Read from disk and write CSV back to disk"""
     logger = getLogger_res2csv(__name__, vars(args))
     resdatafiles = ResdataFiles(args.DATAFILE)

res2df/wellcompletiondata.py

@@ -34,7 +34,7 @@ class KHUnit(StrEnum):
 
 def df(
     resdatafiles: ResdataFiles,
-    zonemap: dict[int, str],
+    zonemap: dict[int, str] | None = None,
     use_wellconnstatus: bool = False,
     excl_well_startswith: str | None = None,
 ) -> pd.DataFrame:
@@ -48,6 +48,9 @@ def df(
     if other connections are closed. And the KH is summed over open connections
     only.
 
+    If no zonemap is provided, it will be looked for in the default location
+    (the same directory as the DATA file loaded in resdatafiles).
+
     Args:
         resdatafiles; ResdataFiles object
         zonemap: dictionary with layer->zone mapping
@@ -56,7 +59,9 @@ def df(
     Returns:
         pd.DataFrame with one row per unique combination of well, zone and date.
     """
+
     compdat_df = create_compdat_df(resdatafiles, zonemap=zonemap)
+
     if "ZONE" not in compdat_df.columns:
         logger.warning(
             "ZONE column not generated in compdat table. "
@@ -252,7 +257,7 @@ def fill_parser(parser: argparse.ArgumentParser) -> argparse.ArgumentParser:
         "DATAFILE",
         type=str,
         help="Name of the .DATA input file for the reservoir simulator."
-        + " There must exist a UNSMRY file with the same path and basename",
+        " There must exist a UNSMRY file with the same path and basename",
     )
     parser.add_argument(
         "--zonemap",
@@ -286,7 +291,7 @@ def fill_parser(parser: argparse.ArgumentParser) -> argparse.ArgumentParser:
     return parser
 
 
-def wellcompletiondata_main(args):
+def wellcompletiondata_main(args: argparse.Namespace) -> None:
     """Entry-point for module, for command line utility"""
     logger = getLogger_res2csv(__name__, vars(args))
 

res2df/wellconnstatus.py

@@ -96,7 +96,7 @@ def fill_parser(parser: argparse.ArgumentParser) -> argparse.ArgumentParser:
         "DATAFILE",
         type=str,
         help="Name of the .DATA input file for the reservoir simulator."
-        + " There must exist a UNSMRY file with the same path and basename.",
+        " There must exist a UNSMRY file with the same path and basename.",
     )
     parser.add_argument(
         "-o",
@@ -112,7 +112,7 @@ def fill_parser(parser: argparse.ArgumentParser) -> argparse.ArgumentParser:
     return parser
 
 
-def wellconnstatus_main(args):
+def wellconnstatus_main(args: argparse.Namespace) -> None:
     """Entry-point for module, for command line utility"""
     logger = getLogger_res2csv(__name__, vars(args))
     resdatafiles = ResdataFiles(args.DATAFILE)

res2df-1.3.11.dist-info/METADATA

@@ -0,0 +1,95 @@
+Metadata-Version: 2.4
+Name: res2df
+Version: 1.3.11
+Summary: Convert reservoir simulator input and output to DataFrames
+Author-email: Håvard Berland <havb@equinor.com>
+License-Expression: GPL-3.0-only
+Project-URL: Homepage, https://github.com/equinor/res2df
+Project-URL: Repository, https://github.com/equinor/res2df
+Project-URL: Documentation, https://equinor.github.io/res2df/
+Keywords: energy,subsurface,reservoir,scientific,engineering
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Software Development :: Libraries
+Classifier: Topic :: Utilities
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Natural Language :: English
+Requires-Python: >=3.11
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: resdata>=5.0.0-b0
+Requires-Dist: resfo
+Requires-Dist: networkx
+Requires-Dist: numpy
+Requires-Dist: opm>=2020.10.2
+Requires-Dist: pandas
+Requires-Dist: pyarrow
+Requires-Dist: pyyaml>=5.1
+Requires-Dist: treelib
+Provides-Extra: tests
+Requires-Dist: pytest; extra == "tests"
+Requires-Dist: pytest-cov; extra == "tests"
+Requires-Dist: pytest-mock; extra == "tests"
+Requires-Dist: pytest-timeout; extra == "tests"
+Provides-Extra: style
+Requires-Dist: pre-commit; extra == "style"
+Provides-Extra: types
+Requires-Dist: mypy; extra == "types"
+Requires-Dist: types-PyYAML; extra == "types"
+Requires-Dist: types-python-dateutil; extra == "types"
+Requires-Dist: types-setuptools; extra == "types"
+Requires-Dist: types-networkx; extra == "types"
+Requires-Dist: pandas-stubs; extra == "types"
+Provides-Extra: docs
+Requires-Dist: sphinx-autoapi; extra == "docs"
+Requires-Dist: ipython; extra == "docs"
+Requires-Dist: rstcheck; extra == "docs"
+Requires-Dist: setuptools; extra == "docs"
+Requires-Dist: sphinx<9; extra == "docs"
+Requires-Dist: sphinx-argparse; extra == "docs"
+Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
+Requires-Dist: sphinx_rtd_theme>=3.1.0.rc1; extra == "docs"
+Provides-Extra: ert
+Requires-Dist: ert>=10.2.0b13; extra == "ert"
+Dynamic: license-file
+
+[![Publish to PyPI](https://github.com/equinor/res2df/actions/workflows/publish.yml/badge.svg)](https://github.com/equinor/res2df/actions/workflows/publish.yml)
+[![PyPI version](https://img.shields.io/pypi/v/res2df.svg)](https://pypi.org/project/res2df/)
+[![codecov](https://codecov.io/gh/equinor/res2df/graph/badge.svg?token=3sZBGGu5VG)](https://codecov.io/gh/equinor/res2df)
+[![Python 3.11-3.14](https://img.shields.io/badge/python-3.11%20|%203.12%20|%203.13%20|%203.14-blue.svg)](https://www.python.org)
+[![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
+[![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
+
+# res2df
+
+res2df is a Pandas DataFrame wrapper around resdata and opm.io, which
+are used to access binary files outputted by reservoir simulators,
+or its input files --- or any other tool outputting to the same data format.
+
+The reverse operation, from a Pandas DataFrame to reservoir simulator include files
+(commonly given the extension ".inc", ".grdecl" etc.) is provided for some of the
+modules.
+
+The package consists of a module pr. datatype, e.g. one module for summary
+files (.UNSMRY), one for completion data etc.
+
+There is a command line frontend for almost all functionality, called
+`res2csv`, which converts the reservoir data to DataFrames, and then dumps
+the dataframes to files in CSV format, and a similar `csv2res` for the
+reverse operation.
+
+For documentation, see <https://equinor.github.io/res2df/>
+
+## License
+
+This library is released under GPLv3.
+
+## Copyright
+
+The code is Copyright Equinor ASA 2019-2021.
+
+Contributions without copyright transfer are welcome.

{res2df-1.3.9.dist-info → res2df-1.3.11.dist-info}/RECORD

@@ -1,33 +1,34 @@
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 res2df/constants.py,sha256=0W-ZYlm3Bbe9MONrRhA0c4yLXfJlqGX5apFN64i8RU0,258
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 res2df/res2csvlogger.py,sha256=n9gMmlgzPNbtZAN9dhrBDpahEK1bG2jPWQZ7CHjSN6c,2243
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 res2df/svg_color_keyword_names.txt,sha256=yiI2Ohv3NxxEAJC5OjVERZi7MLi2-bk7okyI5-xFDr8,1456
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 res2df/hook_implementations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-res2df/hook_implementations/forward_model_steps.py,sha256=I8T9HGmTW95mHHjBuZkhTxaYwIPg7CJwbusfJotXfSA,4800
+res2df/hook_implementations/forward_model_steps.py,sha256=GLpmlv9exEKkCLsHv2AUKWnK4oIxJ4jhHuI0p41_m6U,4986
 res2df/opmkeywords/BRANPROP,sha256=MZA6L6J9olaprrUhRah_wgJoOiYXP-DknVAYOdsIC14,475
 res2df/opmkeywords/COMPDAT,sha256=K19zEK1p9XNoKhD0ylLEJ-oNTi88QQNeUXt7qckO4lg,1345
 res2df/opmkeywords/COMPLUMP,sha256=AC1vBiHmQIjf9IxeVTGp38Ld8Xjz_xHQOUIg-VmGhFk,514
@@ -74,15 +75,15 @@ res2df/opmkeywords/WSEGVALV,sha256=iCknAC9AEhGx_28iv1FSYhukQFT8_ekDdqxfhVrHFJo,9
 res2df/opmkeywords/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 res2df/opmkeywords/readme,sha256=xJM2Or6oiSP02xTe-aY4efPeh5UQiTieScoPHGV4rH0,285
 res2df/opmkeywords/runmetoupdate.sh,sha256=GKvjvd3H3Sf0bmeIduQ43pYcDmcBlOL_Epfm_xjDFUA,996
-res2df/vfp/__init__.py,sha256=cbUr7EjH9WUJvuVeleDQyxp0g_TbXMCCYEpQ_NiYD4w,362
-res2df/vfp/_vfp.py,sha256=hezXkWz58RDy9EHC8mcOE3-VmpLy6BGmxOn_f-SBzcc,19392
-res2df/vfp/_vfpcommon.py,sha256=iq3kim4Zrs-y47NtEpoSTEyeS2hPXTaKBsfcxdzj2gw,6964
+res2df/vfp/__init__.py,sha256=6ksjEvMSkHK_3C_x5Fz0_eR4dq-DtTqm_YMv4WI13Fc,633
+res2df/vfp/_vfp.py,sha256=sHN_08HJEtVzirltNnJ_wfm9JVm_iGrRdVF-BhSzkLQ,19371
+res2df/vfp/_vfpcommon.py,sha256=Np49jE5SIecw-4Gb5ZsGOc45Ln66gseZEDkX8EL2axk,7144
 res2df/vfp/_vfpdefs.py,sha256=TT0bHHbbdGMS3Xm7dzpZPR7zBLPvlCuQIKvH7sr5TBA,6985
-res2df/vfp/_vfpinj.py,sha256=xojHI2hcdUFBUslMKu5K2p2etN-8sinlx-HlkINZOs4,22523
+res2df/vfp/_vfpinj.py,sha256=WYaJRSF2LBnW6dqm4mdhZWGizlKBiUe-xcNBGjgqZ2s,22511
 res2df/vfp/_vfpprod.py,sha256=vohQOu63pQsinGT8wgreeUwxzfwH6S1Om90XB8gfUzs,35669
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-res2df-1.3.9.dist-info/RECORD,,
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+res2df-1.3.11.dist-info/METADATA,sha256=k0mpu_hkpNscaCYFH1s5EvG-z0kkohSvpnwsgZjEqWs,4048
+res2df-1.3.11.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+res2df-1.3.11.dist-info/entry_points.txt,sha256=ctl-_CwayyUVqFMUrwTT3Z3gZdnW6WCaiaLUJ4f_HnY,180
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+res2df-1.3.11.dist-info/RECORD,,