remdb 0.3.242__py3-none-any.whl

rem/sql/migrations/005_schema_update.sql

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+-- Migration: schema_update
+-- Generated by: rem db diff --generate
+-- Changes detected: 139
+--
+-- Review this file before applying!
+-- Apply with: rem db migrate
+--
+
+CREATE TABLE IF NOT EXISTS patient_profiles (
+    id UUID NOT NULL,
+    tenant_id VARCHAR(100) NOT NULL,
+    user_id VARCHAR(256),
+    patient_ref VARCHAR(256) NOT NULL,
+    clinician_ref VARCHAR(256),
+    evaluation_type TEXT,
+    evaluation_date DATE,
+    session_ref VARCHAR(256),
+    risk_level TEXT,
+    suicidality TEXT,
+    suicidality_details VARCHAR(256),
+    homicidal_ideation BOOLEAN,
+    homicidal_details VARCHAR(256),
+    self_harm_current BOOLEAN,
+    self_harm_history BOOLEAN,
+    suicide_attempts_lifetime INTEGER,
+    suicide_attempt_most_recent VARCHAR(256),
+    safety_plan_in_place BOOLEAN,
+    safety_plan_date DATE,
+    appearance VARCHAR(256),
+    behavior VARCHAR(256),
+    speech VARCHAR(256),
+    mood_states JSONB,
+    mood_description TEXT,
+    affect_quality TEXT,
+    affect_congruent BOOLEAN,
+    thought_process TEXT,
+    delusions_present BOOLEAN,
+    delusion_types TEXT[],
+    hallucinations_present BOOLEAN,
+    hallucination_types TEXT[],
+    command_hallucinations BOOLEAN,
+    oriented BOOLEAN,
+    orientation_deficits TEXT[],
+    memory_intact BOOLEAN,
+    attention_intact BOOLEAN,
+    insight TEXT,
+    judgment TEXT,
+    symptoms JSONB,
+    chief_complaint VARCHAR(256),
+    symptom_duration VARCHAR(256),
+    symptom_trajectory VARCHAR(256),
+    precipitating_factors TEXT[],
+    substance_use_profiles JSONB,
+    substance_use_summary TEXT,
+    in_recovery BOOLEAN,
+    recovery_duration VARCHAR(256),
+    mat_current BOOLEAN,
+    diagnoses_current TEXT[],
+    diagnoses_historical TEXT[],
+    first_psychiatric_contact_age INTEGER,
+    hospitalizations_psychiatric INTEGER,
+    last_hospitalization VARCHAR(256),
+    ect_history BOOLEAN,
+    therapy_history VARCHAR(256),
+    family_psychiatric_history VARCHAR(256),
+    current_medications JSONB,
+    other_medications TEXT[],
+    allergies TEXT[],
+    current_therapist BOOLEAN,
+    therapy_type VARCHAR(256),
+    therapy_frequency VARCHAR(256),
+    other_providers TEXT[],
+    functioning JSONB,
+    social_determinants JSONB,
+    cgi_severity TEXT,
+    cgi_improvement TEXT,
+    gaf_equivalent INTEGER,
+    clinical_impression VARCHAR(256),
+    differential_diagnoses TEXT[],
+    treatment_plan VARCHAR(256),
+    treatment_goals TEXT[],
+    barriers_to_treatment TEXT[],
+    strengths TEXT[],
+    follow_up_recommended BOOLEAN,
+    follow_up_urgency VARCHAR(256),
+    follow_up_interval VARCHAR(256),
+    referrals TEXT[],
+    labs_ordered TEXT[],
+    data_source VARCHAR(256),
+    confidence_score FLOAT,
+    reviewed_by_clinician BOOLEAN,
+    notes VARCHAR(256),
+    created_at TIMESTAMP WITHOUT TIME ZONE,
+    updated_at TIMESTAMP WITHOUT TIME ZONE,
+    deleted_at TIMESTAMP WITHOUT TIME ZONE,
+    graph_edges JSONB,
+    metadata JSONB,
+    tags TEXT[]
+);
+-- Changes to table: patient_profiles
+CREATE INDEX IF NOT EXISTS idx_patient_profiles_graph_edges ON patient_profiles (graph_edges);
+CREATE INDEX IF NOT EXISTS idx_patient_profiles_metadata ON patient_profiles (metadata);
+CREATE INDEX IF NOT EXISTS idx_patient_profiles_tags ON patient_profiles (tags);
+CREATE INDEX IF NOT EXISTS idx_patient_profiles_tenant ON patient_profiles (tenant_id);
+CREATE INDEX IF NOT EXISTS idx_patient_profiles_user ON patient_profiles (user_id);
+CREATE TABLE IF NOT EXISTS subscribers (
+    id UUID NOT NULL,
+    tenant_id VARCHAR(100) NOT NULL,
+    user_id VARCHAR(256),
+    email TEXT NOT NULL,
+    name VARCHAR(256),
+    comment TEXT,
+    status TEXT,
+    origin TEXT,
+    origin_detail VARCHAR(256),
+    subscribed_at TIMESTAMP WITHOUT TIME ZONE,
+    unsubscribed_at TIMESTAMP WITHOUT TIME ZONE,
+    ip_address VARCHAR(256),
+    user_agent VARCHAR(256),
+    created_at TIMESTAMP WITHOUT TIME ZONE,
+    updated_at TIMESTAMP WITHOUT TIME ZONE,
+    deleted_at TIMESTAMP WITHOUT TIME ZONE,
+    graph_edges JSONB,
+    metadata JSONB,
+    tags TEXT[]
+);
+-- Changes to table: subscribers
+CREATE INDEX IF NOT EXISTS idx_subscribers_graph_edges ON subscribers (graph_edges);
+CREATE INDEX IF NOT EXISTS idx_subscribers_metadata ON subscribers (metadata);
+CREATE INDEX IF NOT EXISTS idx_subscribers_tags ON subscribers (tags);
+CREATE INDEX IF NOT EXISTS idx_subscribers_tenant ON subscribers (tenant_id);
+CREATE INDEX IF NOT EXISTS idx_subscribers_user ON subscribers (user_id);
+CREATE TABLE IF NOT EXISTS embeddings_patient_profiles (
+    id UUID NOT NULL,
+    entity_id UUID NOT NULL,
+    field_name VARCHAR(100) NOT NULL,
+    provider VARCHAR(50) NOT NULL,
+    model VARCHAR(100) NOT NULL,
+    embedding FLOAT[] NOT NULL,
+    created_at TIMESTAMP WITHOUT TIME ZONE,
+    updated_at TIMESTAMP WITHOUT TIME ZONE
+);
+-- Changes to table: embeddings_patient_profiles
+CREATE INDEX IF NOT EXISTS idx_embeddings_patient_profiles_entity ON embeddings_patient_profiles (entity_id);
+CREATE INDEX IF NOT EXISTS idx_embeddings_patient_profiles_field_provider ON embeddings_patient_profiles (field_name, provider);

rem/sql/migrations/migrate_session_id_to_uuid.sql

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+-- Migration: Update messages.session_id from session name to session UUID
+-- This fixes the bug where messages were stored with session.name instead of session.id
+--
+-- Run this migration AFTER deploying the code fixes in remdb 0.3.204+
+-- The code now correctly stores session.id (UUID), but existing data needs migration.
+
+BEGIN;
+
+-- First, count how many messages need to be updated
+DO $$
+DECLARE
+    count_to_migrate INTEGER;
+BEGIN
+    SELECT COUNT(*) INTO count_to_migrate
+    FROM messages m
+    JOIN sessions s ON m.session_id = s.name
+    WHERE m.session_id != s.id::text;
+
+    RAISE NOTICE 'Messages needing migration: %', count_to_migrate;
+END $$;
+
+-- Update messages.session_id from session name to session UUID
+UPDATE messages m
+SET session_id = s.id::text
+FROM sessions s
+WHERE m.session_id = s.name
+  AND m.session_id != s.id::text;
+
+-- Report how many were updated
+DO $$
+DECLARE
+    updated_count INTEGER;
+BEGIN
+    GET DIAGNOSTICS updated_count = ROW_COUNT;
+    RAISE NOTICE 'Messages updated: %', updated_count;
+END $$;
+
+COMMIT;
+
+-- Verify the fix - all messages should now join by UUID
+SELECT
+    'Messages matching sessions by UUID' as status,
+    COUNT(*) as count
+FROM messages m
+JOIN sessions s ON m.session_id = s.id::text;