rectanglepy 0.0.39__py3-none-any.whl

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Files changed (14) hide show
  1. rectanglepy/__init__.py +8 -0
  2. rectanglepy/data/hao1_annotations_small.csv +96 -0
  3. rectanglepy/data/hao1_counts_small.csv +6934 -0
  4. rectanglepy/data/small_fino_bulks.csv +3739 -0
  5. rectanglepy/pp/__init__.py +4 -0
  6. rectanglepy/pp/create_signature.py +456 -0
  7. rectanglepy/pp/rectangle_signature.py +80 -0
  8. rectanglepy/rectangle.py +117 -0
  9. rectanglepy/tl/__init__.py +3 -0
  10. rectanglepy/tl/deconvolution.py +333 -0
  11. rectanglepy-0.0.39.dist-info/METADATA +104 -0
  12. rectanglepy-0.0.39.dist-info/RECORD +14 -0
  13. rectanglepy-0.0.39.dist-info/WHEEL +4 -0
  14. rectanglepy-0.0.39.dist-info/licenses/LICENSE +21 -0
rectanglepy/__init__.py ADDED
@@ -0,0 +1,8 @@
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+ from importlib.metadata import version
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+
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+ from . import pp, tl
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+ from .rectangle import load_tutorial_data, rectangle
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+
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+ __all__ = ["pp", "tl", "load_tutorial_data", "rectangle"]
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+
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+ __version__ = version("rectanglepy")
rectanglepy/data/hao1_annotations_small.csv ADDED
@@ -0,0 +1,96 @@
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+ ,0
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+ E2L4_GATGCTACAGGCACAA,Monocytes
3
+ L3_AACGTCACATCAGCAT,Monocytes
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+ L3_GGAATGGGTCTAACGT,Monocytes
5
+ E2L7_GTCATTTAGGCCTTCG,Monocytes
6
+ E2L6_CCCTTAGCATTGACCA,Monocytes
7
+ E2L8_CTGAATGAGACGTCGA,Monocytes
8
+ E2L2_AAGCATCAGAAGATCT,Monocytes
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+ E2L2_ACTTCCGTCTGGACCG,Monocytes
10
+ E2L6_GTCGTTCGTGTTACAC,Monocytes
11
+ E2L6_TTACCGCAGGTAGCCA,Monocytes
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+ E2L6_GCTTTCGAGGTGTGAC,Monocytes
13
+ E2L4_CTCAGGGAGGCTGGAT,Monocytes
14
+ E2L7_CTGTACCAGTAGAATC,Monocytes
15
+ E2L2_TGTGTGAAGCGCATCC,T cells CD4 conv
16
+ L4_CCACTTGAGCACGGAT,T cells CD4 conv
17
+ E2L8_GTAGGAGAGAGTGGCT,T cells CD4 conv
18
+ L3_GAACTGTCAATCGCCG,T cells CD4 conv
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+ L4_AGACACTTCTTTCTAG,T cells CD4 conv
20
+ E2L8_AGATAGACATCGTTCC,T cells CD4 conv
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+ L3_CTGCTCATCTCTATGT,T cells CD4 conv
22
+ E2L5_AGGTTGTTCGTTCGCT,T cells CD4 conv
23
+ L3_ACCGTTCGTAGACGGT,T cells CD4 conv
24
+ E2L6_CACGGGTAGTGTCATC,T cells CD4 conv
25
+ E2L6_ATAGGCTCAAGCGCAA,T cells CD4 conv
26
+ E2L7_TAGATCGAGCATTGTC,T cells CD4 conv
27
+ E2L5_CCTCAACCAAACAGGC,T cells CD8
28
+ L3_AGAAGTAAGACTACCT,T cells CD8
29
+ E2L7_TGATTTCGTACCTAAC,T cells CD8
30
+ L1_GTTATGGAGGAGAGTA,T cells CD8
31
+ L2_AGCTTCCGTTGATCGT,T cells CD8
32
+ L5_GTCGTTCGTTCCTTGC,T cells CD8
33
+ E2L8_ATGAGGGGTATGGAAT,T cells CD8
34
+ E2L6_CCCTGATAGCGCACAA,T cells CD8
35
+ L1_CTAGACAGTAATGATG,T cells CD8
36
+ L4_ACAAAGATCTGAGATC,T cells CD8
37
+ E2L4_ATGCATGAGATACCAA,T cells CD8
38
+ L1_TGAGCGCAGTGTTCCA,T cells CD8
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+ L1_TCACTCGCATTCTGTT,T cells CD8
40
+ E2L3_ACGTCCTCACTCAGAT,NK cells
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+ E2L8_TCCAGAACAGCGTAGA,NK cells
42
+ L1_GGAGGATGTATCGCGC,NK cells
43
+ E2L1_TACCCGTTCCGACGGT,NK cells
44
+ L5_TCAAGTGTCCGCGATG,NK cells
45
+ E2L6_TGGAGGACAAAGGGTC,NK cells
46
+ E2L6_CGAGTGCCACTCCTGT,NK cells
47
+ E2L6_TAGGGTTCAGCGATTT,NK cells
48
+ E2L7_AATCGACGTATGACAA,NK cells
49
+ E2L4_AGTGTTGTCCCGTGAG,NK cells
50
+ E2L5_TGTACAGTCCCTCGAT,NK cells
51
+ E2L8_CATTCTACAAGAGGCT,NK cells
52
+ E2L6_AGACCCGCAAGACGGT,B cells
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+ L1_TTGTTCAGTGGGCTCT,B cells
54
+ L4_TACTTACTCTCGACCT,B cells
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+ E2L6_AACCTGACATGTCAGT,B cells
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+ E2L8_TTCCACGTCGAGATAA,B cells
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+ E2L7_AGGCTGCGTGGGTCAA,B cells
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+ E2L4_TAAGCCAAGAGAGTGA,B cells
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+ E2L4_CTCATCGAGGAACGAA,B cells
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+ L2_CCTAACCCACTTCTCG,B cells
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+ E2L4_GAAGTAATCTCTCAAT,B cells
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+ E2L6_GCACTAATCCGCTAGG,B cells
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+ E2L6_CTCACTGAGCCGCACT,B cells
64
+ E2L1_CCTCTCCCATACGCAT,B cells
65
+ E2L7_GCTCAAACAACTCCCT,pDC
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+ E2L6_CCGGACAAGAGTTGTA,pDC
67
+ L4_CATTCTAGTCCCAAAT,pDC
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+ E2L1_TTGTGTTCAGGAGACT,pDC
69
+ L3_CTGTAGATCGCCAGTG,pDC
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+ E2L5_ACATCCCGTAGAATGT,pDC
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+ L1_TCTCTGGTCTTTGCAT,pDC
72
+ L3_CCCATTGAGCTTCGTA,Tregs
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+ L2_AACCAACTCCACACAA,Tregs
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+ L4_CTAGACACACTCCACT,Tregs
75
+ L1_ATTCTACCATCGTCCT,Tregs
76
+ L2_GGGTTATTCTTCCACG,Tregs
77
+ L1_CGTGAATCATGGCGCT,Tregs
78
+ L4_GAGACTTCAAGATGGC,Tregs
79
+ L4_AGTTAGCAGAGTCTGG,Tregs
80
+ L5_ATCGTGAAGAGATTCA,Tregs
81
+ L2_AAAGTCCAGTTGCTCA,Tregs
82
+ L1_CCCTGATAGACTTCAC,Tregs
83
+ L4_GACAGCCTCTGCATGA,Tregs
84
+ L4_TACATTCCACATTCGA,Tregs
85
+ E2L4_TGTTGGAGTCCTACAA,Plasma cells
86
+ L1_TCGAACATCTGAGGTT,Plasma cells
87
+ E2L2_CGAGTGCAGCGCATCC,Plasma cells
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+ L2_CATGCGGCAATCGCGC,mDC
89
+ E2L1_CGGACACAGACTAGAT,mDC
90
+ L5_AGAAGCGCACGACAGA,mDC
91
+ L3_CATTGCCCAAGACAAT,mDC
92
+ E2L8_CCTTGTGTCACTCACC,mDC
93
+ E2L4_CTAGACACAGGACTAG,mDC
94
+ E2L5_GGTTGTACAGAATCGG,mDC
95
+ E2L5_ATGGTTGAGTGAGGTC,mDC
96
+ E2L3_GCTTTCGTCGACGATT,mDC