reader-workbench 1.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (293) hide show
  1. reader_workbench/__init__.py +22 -0
  2. reader_workbench/__main__.py +4 -0
  3. reader_workbench/_version.py +17 -0
  4. reader_workbench/api/__init__.py +74 -0
  5. reader_workbench/api/_record_reads.py +75 -0
  6. reader_workbench/api/artifacts.py +79 -0
  7. reader_workbench/api/facade.py +538 -0
  8. reader_workbench/api/models.py +285 -0
  9. reader_workbench/api/notebooks.py +63 -0
  10. reader_workbench/contracts/__init__.py +18 -0
  11. reader_workbench/contracts/builtins/__init__.py +36 -0
  12. reader_workbench/contracts/builtins/cytometry.py +140 -0
  13. reader_workbench/contracts/builtins/four_state_event_window.py +214 -0
  14. reader_workbench/contracts/builtins/generic.py +21 -0
  15. reader_workbench/contracts/builtins/logic.py +149 -0
  16. reader_workbench/contracts/builtins/plate_reader.py +47 -0
  17. reader_workbench/contracts/catalog.py +257 -0
  18. reader_workbench/contracts/model.py +109 -0
  19. reader_workbench/domains/__init__.py +1 -0
  20. reader_workbench/domains/cytometry/__init__.py +3 -0
  21. reader_workbench/domains/cytometry/analysis/__init__.py +29 -0
  22. reader_workbench/domains/cytometry/analysis/events.py +182 -0
  23. reader_workbench/domains/cytometry/analysis/gating.py +175 -0
  24. reader_workbench/domains/cytometry/analysis/workflow.py +248 -0
  25. reader_workbench/domains/cytometry/io/__init__.py +3 -0
  26. reader_workbench/domains/cytometry/io/fcs.py +135 -0
  27. reader_workbench/domains/cytometry/plots/__init__.py +5 -0
  28. reader_workbench/domains/cytometry/plots/diagnostic.py +155 -0
  29. reader_workbench/domains/logic/__init__.py +3 -0
  30. reader_workbench/domains/logic/crosstalk/__init__.py +3 -0
  31. reader_workbench/domains/logic/crosstalk/pairs.py +661 -0
  32. reader_workbench/domains/logic/four_state_vector/__init__.py +7 -0
  33. reader_workbench/domains/logic/four_state_vector/builder.py +321 -0
  34. reader_workbench/domains/logic/four_state_vector/collection/__init__.py +20 -0
  35. reader_workbench/domains/logic/four_state_vector/collection/checks.py +49 -0
  36. reader_workbench/domains/logic/four_state_vector/collection/constants.py +29 -0
  37. reader_workbench/domains/logic/four_state_vector/collection/model.py +19 -0
  38. reader_workbench/domains/logic/four_state_vector/collection/render.py +383 -0
  39. reader_workbench/domains/logic/four_state_vector/collection/sources.py +185 -0
  40. reader_workbench/domains/logic/four_state_vector/config.py +214 -0
  41. reader_workbench/domains/logic/four_state_vector/diagnostic.py +361 -0
  42. reader_workbench/domains/logic/four_state_vector/heatmap.py +86 -0
  43. reader_workbench/domains/logic/four_state_vector/math.py +191 -0
  44. reader_workbench/domains/logic/four_state_vector/reference.py +85 -0
  45. reader_workbench/domains/logic/four_state_vector/selection.py +228 -0
  46. reader_workbench/domains/logic/four_state_vector/treatment_semantics.py +51 -0
  47. reader_workbench/domains/logic/four_state_vector/validation.py +19 -0
  48. reader_workbench/domains/logic/logic_symmetry/__init__.py +3 -0
  49. reader_workbench/domains/logic/logic_symmetry/encodings.py +93 -0
  50. reader_workbench/domains/logic/logic_symmetry/extract_corners.py +192 -0
  51. reader_workbench/domains/logic/logic_symmetry/main.py +236 -0
  52. reader_workbench/domains/logic/logic_symmetry/metrics.py +96 -0
  53. reader_workbench/domains/logic/logic_symmetry/overlay.py +129 -0
  54. reader_workbench/domains/logic/logic_symmetry/prep.py +138 -0
  55. reader_workbench/domains/logic/logic_symmetry/render.py +356 -0
  56. reader_workbench/domains/logic/treatment_columns.py +42 -0
  57. reader_workbench/domains/plate_reader/__init__.py +1 -0
  58. reader_workbench/domains/plate_reader/analysis/__init__.py +14 -0
  59. reader_workbench/domains/plate_reader/analysis/fold_change.py +474 -0
  60. reader_workbench/domains/plate_reader/analysis/four_state_event_window/__init__.py +21 -0
  61. reader_workbench/domains/plate_reader/analysis/four_state_event_window/aggregation.py +191 -0
  62. reader_workbench/domains/plate_reader/analysis/four_state_event_window/contract_fields.py +50 -0
  63. reader_workbench/domains/plate_reader/analysis/four_state_event_window/contracts.py +320 -0
  64. reader_workbench/domains/plate_reader/analysis/four_state_event_window/design_dispositions.py +54 -0
  65. reader_workbench/domains/plate_reader/analysis/four_state_event_window/disposition_records.py +140 -0
  66. reader_workbench/domains/plate_reader/analysis/four_state_event_window/event_sensitivity.py +27 -0
  67. reader_workbench/domains/plate_reader/analysis/four_state_event_window/materialize.py +274 -0
  68. reader_workbench/domains/plate_reader/analysis/four_state_event_window/observation_resampling.py +97 -0
  69. reader_workbench/domains/plate_reader/analysis/four_state_event_window/reduction.py +62 -0
  70. reader_workbench/domains/plate_reader/analysis/four_state_event_window/seeds.py +15 -0
  71. reader_workbench/domains/plate_reader/analysis/four_state_event_window/sources.py +308 -0
  72. reader_workbench/domains/plate_reader/analysis/four_state_event_window/well_exclusion_validation.py +94 -0
  73. reader_workbench/domains/plate_reader/analysis/four_state_event_window/well_exclusions.py +54 -0
  74. reader_workbench/domains/plate_reader/analysis/timepoints.py +76 -0
  75. reader_workbench/domains/plate_reader/io/__init__.py +6 -0
  76. reader_workbench/domains/plate_reader/io/sample_map.py +65 -0
  77. reader_workbench/domains/plate_reader/io/synergy_h1/__init__.py +6 -0
  78. reader_workbench/domains/plate_reader/io/synergy_h1/_kinetic.py +141 -0
  79. reader_workbench/domains/plate_reader/io/synergy_h1/_parser.py +295 -0
  80. reader_workbench/domains/plate_reader/io/synergy_h1/_shared.py +195 -0
  81. reader_workbench/domains/plate_reader/io/synergy_h1/_snapshot.py +130 -0
  82. reader_workbench/domains/plate_reader/ordering.py +59 -0
  83. reader_workbench/domains/plate_reader/plots/__init__.py +15 -0
  84. reader_workbench/domains/plate_reader/plots/_data.py +29 -0
  85. reader_workbench/domains/plate_reader/plots/common.py +346 -0
  86. reader_workbench/domains/plate_reader/plots/distributions.py +324 -0
  87. reader_workbench/domains/plate_reader/plots/dual_reporter_triptych.py +525 -0
  88. reader_workbench/domains/plate_reader/plots/dual_reporter_triptych_render.py +195 -0
  89. reader_workbench/domains/plate_reader/plots/four_state_event_window/__init__.py +26 -0
  90. reader_workbench/domains/plate_reader/plots/four_state_event_window/diagnostic.py +295 -0
  91. reader_workbench/domains/plate_reader/plots/four_state_event_window/diagnostic_components.py +149 -0
  92. reader_workbench/domains/plate_reader/plots/four_state_event_window/diagnostic_render.py +308 -0
  93. reader_workbench/domains/plate_reader/plots/four_state_event_window/diagnostic_style.py +51 -0
  94. reader_workbench/domains/plate_reader/plots/four_state_event_window/schema.py +8 -0
  95. reader_workbench/domains/plate_reader/plots/four_state_event_window/summary.py +140 -0
  96. reader_workbench/domains/plate_reader/plots/grouping.py +53 -0
  97. reader_workbench/domains/plate_reader/plots/panels/__init__.py +12 -0
  98. reader_workbench/domains/plate_reader/plots/panels/snapshot.py +161 -0
  99. reader_workbench/domains/plate_reader/plots/panels/snapshot_data.py +91 -0
  100. reader_workbench/domains/plate_reader/plots/panels/time_series.py +296 -0
  101. reader_workbench/domains/plate_reader/plots/single_reporter_diagnostic.py +435 -0
  102. reader_workbench/domains/plate_reader/plots/single_reporter_diagnostic_render.py +300 -0
  103. reader_workbench/domains/plate_reader/plots/snapshot_barplot/__init__.py +315 -0
  104. reader_workbench/domains/plate_reader/plots/snapshot_barplot/planning.py +168 -0
  105. reader_workbench/domains/plate_reader/plots/snapshot_heatmap/__init__.py +205 -0
  106. reader_workbench/domains/plate_reader/plots/snapshot_heatmap/inputs.py +103 -0
  107. reader_workbench/domains/plate_reader/plots/time_series.py +317 -0
  108. reader_workbench/domains/plate_reader/plots/ts_and_snap/__init__.py +479 -0
  109. reader_workbench/domains/plate_reader/plots/ts_and_snap/planning.py +283 -0
  110. reader_workbench/domains/time_series/__init__.py +29 -0
  111. reader_workbench/domains/time_series/aggregation.py +60 -0
  112. reader_workbench/domains/time_series/contracts.py +368 -0
  113. reader_workbench/domains/time_series/reduction.py +395 -0
  114. reader_workbench/errors.py +55 -0
  115. reader_workbench/maintenance/__init__.py +6 -0
  116. reader_workbench/maintenance/docs.py +335 -0
  117. reader_workbench/maintenance/model.py +28 -0
  118. reader_workbench/maintenance/release.py +39 -0
  119. reader_workbench/maintenance/skills.py +124 -0
  120. reader_workbench/plotting/__init__.py +20 -0
  121. reader_workbench/plotting/mpl.py +56 -0
  122. reader_workbench/plotting/sinks.py +69 -0
  123. reader_workbench/plotting/style.py +175 -0
  124. reader_workbench/plotting/utils.py +27 -0
  125. reader_workbench/plugins/__init__.py +1 -0
  126. reader_workbench/plugins/catalog.py +33 -0
  127. reader_workbench/plugins/export/__init__.py +0 -0
  128. reader_workbench/plugins/export/_paths.py +21 -0
  129. reader_workbench/plugins/export/csv.py +41 -0
  130. reader_workbench/plugins/export/xlsx.py +44 -0
  131. reader_workbench/plugins/ingest/__init__.py +0 -0
  132. reader_workbench/plugins/ingest/_discovery.py +58 -0
  133. reader_workbench/plugins/ingest/discovery_policy.py +66 -0
  134. reader_workbench/plugins/ingest/flow_cytometer.py +139 -0
  135. reader_workbench/plugins/ingest/synergy_h1.py +234 -0
  136. reader_workbench/plugins/manifests/__init__.py +1 -0
  137. reader_workbench/plugins/manifests/export.py +29 -0
  138. reader_workbench/plugins/manifests/ingest.py +29 -0
  139. reader_workbench/plugins/manifests/plot.py +161 -0
  140. reader_workbench/plugins/manifests/transform.py +172 -0
  141. reader_workbench/plugins/manifests/validator.py +18 -0
  142. reader_workbench/plugins/plot/__init__.py +0 -0
  143. reader_workbench/plugins/plot/_shared.py +55 -0
  144. reader_workbench/plugins/plot/cytometry_diagnostic.py +54 -0
  145. reader_workbench/plugins/plot/distributions.py +58 -0
  146. reader_workbench/plugins/plot/dual_reporter_triptych.py +224 -0
  147. reader_workbench/plugins/plot/four_state_event_window_diagnostic.py +133 -0
  148. reader_workbench/plugins/plot/four_state_event_window_summary.py +53 -0
  149. reader_workbench/plugins/plot/four_state_vector_collection.py +45 -0
  150. reader_workbench/plugins/plot/four_state_vector_diagnostic.py +105 -0
  151. reader_workbench/plugins/plot/four_state_vector_heatmap.py +63 -0
  152. reader_workbench/plugins/plot/logic_symmetry.py +56 -0
  153. reader_workbench/plugins/plot/single_reporter_diagnostic.py +279 -0
  154. reader_workbench/plugins/plot/snapshot_barplot.py +65 -0
  155. reader_workbench/plugins/plot/snapshot_heatmap.py +104 -0
  156. reader_workbench/plugins/plot/time_series.py +114 -0
  157. reader_workbench/plugins/plot/ts_and_snap.py +210 -0
  158. reader_workbench/plugins/transform/__init__.py +0 -0
  159. reader_workbench/plugins/transform/_four_state_vector.py +204 -0
  160. reader_workbench/plugins/transform/_labeling.py +109 -0
  161. reader_workbench/plugins/transform/alias.py +70 -0
  162. reader_workbench/plugins/transform/assay_labels.py +62 -0
  163. reader_workbench/plugins/transform/blank.py +79 -0
  164. reader_workbench/plugins/transform/crosstalk_pairs.py +180 -0
  165. reader_workbench/plugins/transform/cytometry_gating.py +120 -0
  166. reader_workbench/plugins/transform/fold_change.py +79 -0
  167. reader_workbench/plugins/transform/four_state_event_window.py +93 -0
  168. reader_workbench/plugins/transform/four_state_vector.py +62 -0
  169. reader_workbench/plugins/transform/four_state_vector_collection.py +41 -0
  170. reader_workbench/plugins/transform/logic_symmetry.py +67 -0
  171. reader_workbench/plugins/transform/outlier_filter.py +60 -0
  172. reader_workbench/plugins/transform/overflow.py +197 -0
  173. reader_workbench/plugins/transform/ratio.py +237 -0
  174. reader_workbench/plugins/transform/sample_map.py +170 -0
  175. reader_workbench/plugins/transform/sample_metadata.py +94 -0
  176. reader_workbench/plugins/validator/__init__.py +1 -0
  177. reader_workbench/plugins/validator/to_tidy_plus_map.py +155 -0
  178. reader_workbench/protocols/__init__.py +80 -0
  179. reader_workbench/protocols/_builtins_plate_reader_growth.py +179 -0
  180. reader_workbench/protocols/_builtins_plate_reader_variants.py +274 -0
  181. reader_workbench/protocols/builtins.py +1656 -0
  182. reader_workbench/protocols/compiler.py +22 -0
  183. reader_workbench/protocols/compilers/__init__.py +1 -0
  184. reader_workbench/protocols/compilers/common.py +100 -0
  185. reader_workbench/protocols/compilers/cytometry.py +87 -0
  186. reader_workbench/protocols/compilers/generic.py +14 -0
  187. reader_workbench/protocols/compilers/logic.py +245 -0
  188. reader_workbench/protocols/compilers/plate_reader.py +937 -0
  189. reader_workbench/protocols/compilers/plate_reader_pipeline.py +197 -0
  190. reader_workbench/protocols/model.py +1486 -0
  191. reader_workbench/protocols/semantic_coverage.py +234 -0
  192. reader_workbench/runtime/__init__.py +12 -0
  193. reader_workbench/runtime/builtin.py +23 -0
  194. reader_workbench/runtime/model.py +42 -0
  195. reader_workbench/workbench/__init__.py +60 -0
  196. reader_workbench/workbench/assets/__init__.py +22 -0
  197. reader_workbench/workbench/assets/types.py +118 -0
  198. reader_workbench/workbench/audit/__init__.py +5 -0
  199. reader_workbench/workbench/audit/experiments.py +307 -0
  200. reader_workbench/workbench/audit/staging.py +187 -0
  201. reader_workbench/workbench/cli/__init__.py +51 -0
  202. reader_workbench/workbench/cli/_lazy.py +9 -0
  203. reader_workbench/workbench/cli/_records_view.py +150 -0
  204. reader_workbench/workbench/cli/_surface_execution.py +443 -0
  205. reader_workbench/workbench/cli/audit.py +95 -0
  206. reader_workbench/workbench/cli/automation.py +229 -0
  207. reader_workbench/workbench/cli/demo.py +46 -0
  208. reader_workbench/workbench/cli/dop.py +91 -0
  209. reader_workbench/workbench/cli/experiments.py +635 -0
  210. reader_workbench/workbench/cli/helpers.py +232 -0
  211. reader_workbench/workbench/cli/main.py +59 -0
  212. reader_workbench/workbench/cli/maintenance.py +82 -0
  213. reader_workbench/workbench/cli/notebooks.py +260 -0
  214. reader_workbench/workbench/cli/pagination.py +117 -0
  215. reader_workbench/workbench/cli/protocols.py +336 -0
  216. reader_workbench/workbench/cli/shared.py +309 -0
  217. reader_workbench/workbench/cli/surfaces.py +534 -0
  218. reader_workbench/workbench/cli/verification.py +128 -0
  219. reader_workbench/workbench/commands.py +10 -0
  220. reader_workbench/workbench/config/__init__.py +47 -0
  221. reader_workbench/workbench/config/identity.py +13 -0
  222. reader_workbench/workbench/config/load.py +405 -0
  223. reader_workbench/workbench/config/model.py +274 -0
  224. reader_workbench/workbench/context.py +26 -0
  225. reader_workbench/workbench/decl/__init__.py +31 -0
  226. reader_workbench/workbench/decl/build.py +190 -0
  227. reader_workbench/workbench/decl/model.py +81 -0
  228. reader_workbench/workbench/dop/__init__.py +12 -0
  229. reader_workbench/workbench/dop/builtins.py +261 -0
  230. reader_workbench/workbench/dop/model.py +209 -0
  231. reader_workbench/workbench/engine/__init__.py +42 -0
  232. reader_workbench/workbench/engine/_shared.py +76 -0
  233. reader_workbench/workbench/engine/contracts.py +283 -0
  234. reader_workbench/workbench/engine/execution.py +326 -0
  235. reader_workbench/workbench/engine/file_outputs.py +260 -0
  236. reader_workbench/workbench/engine/inputs.py +161 -0
  237. reader_workbench/workbench/engine/invocations.py +507 -0
  238. reader_workbench/workbench/engine/planning.py +72 -0
  239. reader_workbench/workbench/engine/runtime.py +464 -0
  240. reader_workbench/workbench/engine/setup.py +149 -0
  241. reader_workbench/workbench/engine/validation.py +684 -0
  242. reader_workbench/workbench/experiment/__init__.py +47 -0
  243. reader_workbench/workbench/experiment/model.py +381 -0
  244. reader_workbench/workbench/experiments.py +133 -0
  245. reader_workbench/workbench/graph/__init__.py +47 -0
  246. reader_workbench/workbench/graph/nodes.py +102 -0
  247. reader_workbench/workbench/graph/normalize.py +177 -0
  248. reader_workbench/workbench/graph/refs.py +148 -0
  249. reader_workbench/workbench/input_discovery.py +19 -0
  250. reader_workbench/workbench/inspection/__init__.py +3 -0
  251. reader_workbench/workbench/inspection/catalogs.py +128 -0
  252. reader_workbench/workbench/inspection/common.py +92 -0
  253. reader_workbench/workbench/inspection/dop.py +64 -0
  254. reader_workbench/workbench/inspection/experiments.py +449 -0
  255. reader_workbench/workbench/inspection/inventory.py +68 -0
  256. reader_workbench/workbench/inspection/protocols.py +368 -0
  257. reader_workbench/workbench/inspection/readiness.py +333 -0
  258. reader_workbench/workbench/inspection/reports.py +367 -0
  259. reader_workbench/workbench/inspection/results.py +166 -0
  260. reader_workbench/workbench/inspection/runtime.py +287 -0
  261. reader_workbench/workbench/inspection/semantics.py +192 -0
  262. reader_workbench/workbench/inspection/validation.py +30 -0
  263. reader_workbench/workbench/notebooks/__init__.py +17 -0
  264. reader_workbench/workbench/notebooks/_launch_registry.py +112 -0
  265. reader_workbench/workbench/notebooks/_launch_runtime.py +104 -0
  266. reader_workbench/workbench/notebooks/components/__init__.py +21 -0
  267. reader_workbench/workbench/notebooks/components/deliverables.py +403 -0
  268. reader_workbench/workbench/notebooks/components/overview.py +119 -0
  269. reader_workbench/workbench/notebooks/eda.marimo.py.txt +153 -0
  270. reader_workbench/workbench/notebooks/launch.py +274 -0
  271. reader_workbench/workbench/notebooks/presentation.py +136 -0
  272. reader_workbench/workbench/notebooks/scaffold.py +60 -0
  273. reader_workbench/workbench/ontology.py +78 -0
  274. reader_workbench/workbench/paths.py +44 -0
  275. reader_workbench/workbench/ports/__init__.py +31 -0
  276. reader_workbench/workbench/ports/model.py +168 -0
  277. reader_workbench/workbench/records/__init__.py +44 -0
  278. reader_workbench/workbench/records/epoch.py +329 -0
  279. reader_workbench/workbench/records/evidence.py +247 -0
  280. reader_workbench/workbench/records/identity.py +87 -0
  281. reader_workbench/workbench/records/locking.py +185 -0
  282. reader_workbench/workbench/records/model.py +711 -0
  283. reader_workbench/workbench/records/sources.py +73 -0
  284. reader_workbench/workbench/records/store.py +1022 -0
  285. reader_workbench/workbench/records/verification.py +998 -0
  286. reader_workbench/workbench/registry.py +333 -0
  287. reader_workbench/workbench/spec_overrides.py +215 -0
  288. reader_workbench-1.0.0.dist-info/METADATA +91 -0
  289. reader_workbench-1.0.0.dist-info/RECORD +293 -0
  290. reader_workbench-1.0.0.dist-info/WHEEL +5 -0
  291. reader_workbench-1.0.0.dist-info/entry_points.txt +2 -0
  292. reader_workbench-1.0.0.dist-info/licenses/LICENSE +21 -0
  293. reader_workbench-1.0.0.dist-info/top_level.txt +1 -0
@@ -0,0 +1,73 @@
1
+ from __future__ import annotations
2
+
3
+ from dataclasses import dataclass
4
+
5
+ from reader_workbench.contracts import ContractCatalog
6
+ from reader_workbench.errors import RecordError
7
+ from reader_workbench.workbench.graph import SourceRecordRef
8
+
9
+ from .model import (
10
+ DataFrameArtifactRecord,
11
+ FileBundleRecord,
12
+ record_revision_digest,
13
+ verify_record_artifact_integrity,
14
+ )
15
+ from .store import RecordStore
16
+
17
+
18
+ @dataclass(frozen=True)
19
+ class ResolvedSourceRecord:
20
+ """One exact record revision owned by another Reader experiment."""
21
+
22
+ ref: SourceRecordRef
23
+ record: DataFrameArtifactRecord | FileBundleRecord
24
+ revision_digest: str
25
+
26
+ def verify_artifact_integrity(self) -> None:
27
+ """Verify the live artifacts bound to this exact catalog revision."""
28
+
29
+ verify_record_artifact_integrity(self.record, outputs_dir=self.ref.outputs_dir)
30
+
31
+ def load_dataframe(self):
32
+ if not isinstance(self.record, DataFrameArtifactRecord):
33
+ raise RecordError(
34
+ f"Source record {self.ref.experiment_id}:{self.ref.record_id} is not a dataframe artifact"
35
+ )
36
+ return self.record.load_dataframe()
37
+
38
+
39
+ @dataclass(frozen=True)
40
+ class SourceRecordCollection:
41
+ """Ordered, provenance-bearing source records supplied to an aggregate plugin."""
42
+
43
+ records: tuple[ResolvedSourceRecord, ...]
44
+
45
+ def __post_init__(self) -> None:
46
+ if not self.records:
47
+ raise RecordError("A source record collection must contain at least one record")
48
+
49
+ def __iter__(self):
50
+ return iter(self.records)
51
+
52
+ def __len__(self) -> int:
53
+ return len(self.records)
54
+
55
+
56
+ def resolve_source_record(ref: SourceRecordRef, *, contracts: ContractCatalog) -> ResolvedSourceRecord:
57
+ store = RecordStore(
58
+ ref.outputs_dir,
59
+ contracts=contracts,
60
+ experiment_root=ref.experiment_root,
61
+ create=False,
62
+ )
63
+ record = store.latest_record(ref.record_id)
64
+ if record is None:
65
+ raise RecordError(f"Source record {ref.record_id!r} is missing from experiment {ref.experiment_id!r}")
66
+ return ResolvedSourceRecord(
67
+ ref=ref,
68
+ record=record,
69
+ revision_digest=record_revision_digest(record, outputs_dir=ref.outputs_dir),
70
+ )
71
+
72
+
73
+ __all__ = ["ResolvedSourceRecord", "SourceRecordCollection", "resolve_source_record"]