rcsb-embedding-model 0.0.34__py3-none-any.whl → 0.0.35__py3-none-any.whl

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Files changed (6) hide show
  1. rcsb_embedding_model/dataset/esm_prot_from_chain.py +2 -2
  2. {rcsb_embedding_model-0.0.34.dist-info → rcsb_embedding_model-0.0.35.dist-info}/METADATA +1 -1
  3. {rcsb_embedding_model-0.0.34.dist-info → rcsb_embedding_model-0.0.35.dist-info}/RECORD +6 -6
  4. {rcsb_embedding_model-0.0.34.dist-info → rcsb_embedding_model-0.0.35.dist-info}/WHEEL +0 -0
  5. {rcsb_embedding_model-0.0.34.dist-info → rcsb_embedding_model-0.0.35.dist-info}/entry_points.txt +0 -0
  6. {rcsb_embedding_model-0.0.34.dist-info → rcsb_embedding_model-0.0.35.dist-info}/licenses/LICENSE.md +0 -0
rcsb_embedding_model/dataset/esm_prot_from_chain.py CHANGED
@@ -72,9 +72,9 @@ class EsmProtFromChain(Dataset):
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  for atom_ch in chain_iter(structure):
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  if len(atom_ch) == 0:
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  raise IOError(f"No atoms were found in structure chain {src_name}.{chain_id}")
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- atom_ch = filter_residues(atom_ch)
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- atom_ch = rename_atom_attr(atom_ch)
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  try:
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+ atom_ch = filter_residues(atom_ch)
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+ atom_ch = rename_atom_attr(atom_ch)
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  protein_chain = ProteinChain.from_atomarray(atom_ch)
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  protein_chain = ESMProtein.from_protein_chain(protein_chain)
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  except Exception as e:
{rcsb_embedding_model-0.0.34.dist-info → rcsb_embedding_model-0.0.35.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: rcsb-embedding-model
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- Version: 0.0.34
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+ Version: 0.0.35
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  Summary: Protein Embedding Model for Structure Search
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  Project-URL: Homepage, https://github.com/rcsb/rcsb-embedding-model
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  Project-URL: Issues, https://github.com/rcsb/rcsb-embedding-model/issues
{rcsb_embedding_model-0.0.34.dist-info → rcsb_embedding_model-0.0.35.dist-info}/RECORD RENAMED
@@ -2,7 +2,7 @@ rcsb_embedding_model/__init__.py,sha256=7YfYO-V-u__19eAZfQ3t5Gf2qrhd_gwQB8rHO0J0
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  rcsb_embedding_model/rcsb_structure_embedding.py,sha256=dKp9hXQO0JAnO4SEfjJ_mG_jHu3UxAPguv6jkOjp-BI,4487
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  rcsb_embedding_model/cli/args_utils.py,sha256=7nP2q8pL5dWK_U7opxtWmoFcYVwasky6elHk-dASFaI,165
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  rcsb_embedding_model/cli/inference.py,sha256=67_Tr3LWeA3T4KS5mkjq6tw77Ypy0R8IwMxEG2FwVqQ,19901
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- rcsb_embedding_model/dataset/esm_prot_from_chain.py,sha256=p0IqLjGj1v-0sKGbrpWfkyYZXSurF3OOVkVk0g3zxyE,4410
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+ rcsb_embedding_model/dataset/esm_prot_from_chain.py,sha256=sLbBapgchxciq4RgwHkw9yoNokGlOv2Z5PSaiWV5G64,4418
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  rcsb_embedding_model/dataset/esm_prot_from_structure.py,sha256=3HzXCCc-UqmZNbJaeXHyUsSIZZxMc2erbxAPGIxSmfE,2621
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  rcsb_embedding_model/dataset/resdiue_assembly_embedding_from_structure.py,sha256=69h1VkrIXesHZi1cG3BOMMytSDeRzcBBP0_Z3Xz3dM8,2869
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  rcsb_embedding_model/dataset/residue_assembly_embedding_from_tensor_file.py,sha256=Hd9oH-IVgY6d7Dxy5VfiwHvSaK-Wwhk6ccUBgOwl0TU,3740
@@ -23,8 +23,8 @@ rcsb_embedding_model/utils/model.py,sha256=xr3p02ohOgJ5UInwdIupN68Oq4yvNFhxobZRa
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  rcsb_embedding_model/utils/structure_parser.py,sha256=fSIbq_a_aEigCWY_1dUcW9d9Law0ZDOcZAxJlZL0Rt8,3377
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  rcsb_embedding_model/utils/structure_provider.py,sha256=eWtxjkPpmRfmil_DKR1J6miaXR3lQ28DF5O0qrqSgGA,786
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  rcsb_embedding_model/writer/batch_writer.py,sha256=rTFNasB0Xp4-XCNTXKeEWZxSrb7lvZytoRldJUWn9Jg,3312
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- rcsb_embedding_model-0.0.34.dist-info/METADATA,sha256=zL59HhwjvhQAOrh_hJAMQ_997sXCnVzboStFC-j5qog,5351
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- rcsb_embedding_model-0.0.34.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- rcsb_embedding_model-0.0.34.dist-info/entry_points.txt,sha256=MK11jTIEmaV-x4CkPX5IymDaVs7Ky_f2xxU8BJVZ_9Q,69
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- rcsb_embedding_model-0.0.34.dist-info/licenses/LICENSE.md,sha256=oUaHiKgfBkChth_Sm67WemEvatO1U0Go8LHjaskXY0w,1522
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- rcsb_embedding_model-0.0.34.dist-info/RECORD,,
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+ rcsb_embedding_model-0.0.35.dist-info/METADATA,sha256=h5uREe5bIKpY4o-ZUzXF9tObRb_eewm9GJ44vgijdig,5351
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+ rcsb_embedding_model-0.0.35.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ rcsb_embedding_model-0.0.35.dist-info/entry_points.txt,sha256=MK11jTIEmaV-x4CkPX5IymDaVs7Ky_f2xxU8BJVZ_9Q,69
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+ rcsb_embedding_model-0.0.35.dist-info/licenses/LICENSE.md,sha256=oUaHiKgfBkChth_Sm67WemEvatO1U0Go8LHjaskXY0w,1522
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+ rcsb_embedding_model-0.0.35.dist-info/RECORD,,