rc-qlc 0.3.24__cp311-cp311-win_amd64.whl

qlc/__init__.py

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+# QLC module package init
+
+# Import the compiled Cython extensions
+try:
+    from . import py
+except ImportError as e:
+    # If compiled modules are not available, this is expected during development
+    pass

qlc/cli/__init__.py

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+# QLC module package init
+import os
+import subprocess
+import sys
+
+def run_shell_driver():
+    # Correctly locate the 'sh' directory relative to the package installation
+    sh_dir = os.path.join(os.path.dirname(__file__), '..', 'sh')
+    script = os.path.join(sh_dir, "qlc_main.sh")
+    subprocess.run(["bash", script] + sys.argv[1:])
+
+def run_python_driver():
+    # This function seems to be for a different purpose, ensure qlc_main is correct
+    from qlc.cli.qlc_main import main
+    main()
+
+def run_batch_driver():
+    # Correctly locate the 'sh' directory relative to the package installation
+    sh_dir = os.path.join(os.path.dirname(__file__), '..', 'sh')
+    script = os.path.join(sh_dir, "qlc_start_batch.sh")
+    subprocess.run(["bash", script] + sys.argv[1:])

qlc/cli/installer.py

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+import argparse
+from qlc.install import setup
+from qlc.py.version import QLC_VERSION
+
+def main():
+    parser = argparse.ArgumentParser(description="QLC Installer")
+    parser.add_argument(
+        "--mode",
+        choices=["cams", "test", "interactive"],
+        default="test",
+        help="Installation mode: test (for tests), cams (for CAMS), or interactive (development)"
+    )
+    args = parser.parse_args()
+
+    print(f"[QLC-INSTALL] Installing QLC version {QLC_VERSION} in '{args.mode}' mode")
+    setup(mode=args.mode, version=QLC_VERSION)

qlc/cli/qlc_main.py

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+import os
+import sys
+import json
+import time
+import logging
+import argparse
+import traceback
+import multiprocessing
+import concurrent.futures
+from datetime import datetime
+from multiprocessing import current_process
+from concurrent.futures import ThreadPoolExecutor, as_completed
+from qlc.py.control import run_main_processing, process_multiple_configs_sp, process_single_config
+from qlc.py.utils import expand_paths, get_timestamp, setup_logging, validate_paths, merge_global_attributes
+from qlc.py.version import QLC_VERSION, QLC_RELEASE_DATE, QLC_DISTRIBUTION
+from qlc.py.plugin_loader import try_import_plugin_module
+from qlc.py.logging_utils import log_input_availability
+from qlc.py.logging_utils import log_qlc_banner
+
+# -----------------------------------------------
+# QLC main controller (Master Orchestration)
+# -----------------------------------------------
+
+def load_config_with_defaults(config):
+    # Set defaults if missing
+    defaults = {
+        "global_attributes": {
+            "title": "QLC Processor application",
+            "subtitle": f"Processing file info (auto replaced)",
+            "summary": "This file contains metadata processed by QLC.",
+            "author": "Plain & Simple, plain.simple@example.com",
+            "source": "Quick Look CAMS (QLC) Processor",
+            "version": f"QLC Version: {QLC_VERSION}",
+            "qlcmode": f"QLC Mode: {QLC_DISTRIBUTION}",
+            "release": f"QLC Release Date: {QLC_RELEASE_DATE}",
+            "contact": "Swen Metzger, ResearchConcepts io GmbH",
+            "rcemail": "contact@researchconcepts.io",
+            "internet": "https://www.researchconcepts.io",
+            "timestamp": f"Created on {datetime.now()}",
+            "history": f"User specific (optional)",
+            "Conventions": "CF-1.8"
+        },
+        "name": "CAMS2_35",
+        "logdir": "./log",
+        "workdir": "./run",
+        "outdir": "./output",
+        "model": "model",
+        "experiments": "",
+        "exp_labels": "",
+        "mod_path": "",
+        "obs_path": "",
+        "obs_dataset_type": "ebas_hourly",
+        "station_file": "",
+        "station_radius_deg": 0.5,
+        "station_network": "",
+        "station_suffix": "",
+        "station_type": "concentration",
+        "start_date": "2018-01-01",
+        "end_date": "2018-01-31",
+        "variable": "",
+        "plot_type": "",
+        "model_level": 0,
+        "plot_region": "Globe",
+        "time_average": "mean",
+        "plot_mode": "grouped",
+        "station_plot_group_size": 10,
+        "show_stations": True,
+        "show_min_max": True,
+        "log_y_axis": False,
+        "fix_y_axis": True,
+        "force_full_year": True,
+        "show_station_map": True,
+        "load_station_timeseries_obs": True,
+        "show_station_timeseries_obs": True,
+        "show_station_timeseries_mod": True,
+        "show_station_timeseries_com": True,
+        "save_plot_format": "pdf,png",
+        "save_data_format": "csv",
+        "read_data_format": "nc",
+        "output_base_name": "./output/QLC",
+        "multiprocessing": False,
+        "lazy_load_nc": True,
+        "n_threads": "1",
+        "debug": False,
+        "debug_extended": False
+    }
+
+    for key, value in defaults.items():
+        if key not in config:
+            config[key] = value
+
+    config = merge_global_attributes(config, defaults)
+    return config
+
+def run_single_config(config_entry, idx, total_configs):
+    try:
+        # Minimal logging setup for subprocesses only
+        if current_process().name != "MainProcess":
+            if not logging.getLogger().hasHandlers():
+                logging.basicConfig(
+                    level=logging.INFO,
+                    format='[%(asctime)s] %(levelname)s: [%(processName)s] %(message)s',
+                    handlers=[logging.StreamHandler(sys.stdout)]
+                )
+
+        logging.info(f"(Process {idx+1}/{total_configs}) Starting configuration '{config_entry.get('name', f'config_{idx+1}')}'...")
+
+        config = load_config_with_defaults(config_entry)
+        validate_paths(config)
+        log_input_availability(config)
+        if not config.get("use_mod", False) and not config.get("use_obs", False):
+            logging.warning("⚠️ Nothing to process: no model or observation input available. Skipping execution.")
+            return
+
+        run_main_processing(config)
+
+        logging.info(f"(Process {idx+1}/{total_configs}) Finished configuration '{config_entry.get('name', f'config_{idx+1}')}'.")
+    except Exception as e:
+        print(f"[ERROR] Failed in run_single_config for config {idx+1}: {e}")
+        traceback.print_exc()
+
+def run_with_file(file_path):
+    start_time = time.time()
+    print("************************************************************************************************")
+    print(f"Start execution: {time.strftime('%Y-%m-%d %H:%M:%S', time.localtime(start_time))}")
+    if not os.path.isfile(file_path):
+        print(f"ERROR: Input file '{file_path}' not found.")
+        sys.exit(1)
+
+    with open(file_path, 'r') as f:
+        try:
+            config_data = expand_paths(json.load(f))
+            validate_paths(config_data if isinstance(config_data, dict) else config_data[0])
+            print(json.dumps(config_data, indent=2))
+        except json.JSONDecodeError as e:
+            print(f"ERROR: Failed to parse JSON: {e}")
+            sys.exit(1)
+
+    if isinstance(config_data, list):
+        first_config = config_data[0]
+    else:
+        first_config = config_data
+    
+    log_dir = first_config.get("logdir", "~/qlc/log")
+    log_filename = os.path.join(log_dir, f"qlc_{get_timestamp()}.log")
+    full_log_path = os.path.join(os.path.expanduser(log_dir), log_filename)
+    log_level = logging.DEBUG if first_config.get("debug", False) else logging.INFO
+#   setup_logging(log_dir=os.path.dirname(full_log_path), level=log_level)   
+    setup_logging(log_dir=log_dir, level=log_level)
+
+#   If the config is a list, loop over multiple configs
+    if isinstance(config_data, list) and len(config_data) == 1:
+        process_single_config(config_data[0], run_single_config)
+    elif isinstance(config_data, list):
+        mp = config_data[0].get("multiprocessing", False)
+        if mp:
+            plugin_mp = try_import_plugin_module("qlc_multiprocessing_plugin")
+            if plugin_mp and hasattr(plugin_mp, "process_multiple_configs_mp"):
+                plugin_mp.process_multiple_configs_mp(config_data, run_single_config)
+            else:
+                print("WARNING: Multiprocessing requested but plugin plugin not found or invalid. Using single config fallback.")
+                process_multiple_configs_sp(config_data, run_single_config)
+        else:
+            process_multiple_configs_sp(config_data, run_single_config)
+    else:
+        process_single_config(config_data, run_single_config)
+
+    end_time = time.time()
+    duration = end_time - start_time
+    logging.info(f"End   execution: {time.strftime('%Y-%m-%d %H:%M:%S', time.localtime(end_time))} - Total execution time: {duration:.2f} seconds")
+    logging.info("************************************************************************************************")
+
+def main():
+    parser = argparse.ArgumentParser(description="Run QLC Python Processor")
+    parser.add_argument("--config", type=str, help="Path to config JSON", default=os.path.expanduser("~/qlc/config/json/qlc_config.json"))
+    args = parser.parse_args()
+
+    if args.config:
+        run_with_file(args.config)
+    else:
+        print(f"ERROR: Please provide an input JSON file using --config option.")
+        sys.exit(1)
+
+if __name__ == "__main__":
+    main()

qlc/cli/qlc_py_main.py

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+import os
+import sys
+import subprocess
+from datetime import datetime
+from pathlib import Path
+
+def main():
+    """
+    Python entry point for running the main QLC processing script.
+    """
+    script_name = sys.argv[0]
+    print("________________________________________________________________________________________")
+    print(f"Start {script_name} at {datetime.now()}")
+    print("----------------------------------------------------------------------------------------")
+
+    # --- Change to QLC home directory ---
+    qlc_home = Path.home() / "qlc"
+    if not qlc_home.is_dir():
+        print(f"[ERROR] QLC home directory not found at: {qlc_home}")
+        print("Please run 'qlc-install' to set up the required structure.")
+        sys.exit(1)
+    
+    os.chdir(qlc_home)
+    print(f"Changed working directory to: {os.getcwd()}")
+    # ---
+
+    config_path = sys.argv[1] if len(sys.argv) > 1 else str(Path.home() / "qlc" / "config" / "json" / "qlc_config.json")
+    log_dir = qlc_home / "log"
+    log_dir.mkdir(parents=True, exist_ok=True)
+
+    timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
+    log_file = log_dir / f"qlc_run_{timestamp}.log"
+
+    print("************************************************************************************************")
+    print(f"Running {script_name} with output logged to {log_file}")
+
+    # The command will use the same Python interpreter that is running this script
+    python_executable = sys.executable
+    command = [
+        python_executable,
+        "-m",
+        "qlc.cli.qlc_main",
+        "--config",
+        config_path,
+    ]
+    
+    print(f"Executing command: {' '.join(command)}")
+
+    try:
+        with open(log_file, "w") as lf:
+            process = subprocess.Popen(
+                command,
+                stdout=subprocess.PIPE,
+                stderr=subprocess.STDOUT,
+                text=True,
+                bufsize=1,
+                universal_newlines=True,
+            )
+            if process.stdout:
+                for line in process.stdout:
+                    print(line, end="")
+                    lf.write(line)
+            process.wait()
+
+    except Exception as e:
+        print(f"An error occurred: {e}")
+
+    print("________________________________________________________________________________________")
+    print(f"End   {script_name} at {datetime.now()}")
+    print("________________________________________________________________________________________")
+
+if __name__ == "__main__":
+    main()
+

qlc/config/json/qlc_config.json

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+[
+  {
+    "name": "CAMS2_35",
+    "logdir": "./log",
+    "workdir": "./run",
+    "output_base_name": "$HOME/qlc/output/GMD",
+    "station_file": "$HOME/qlc/obs/data/ebas_station-locations.csv",
+    "obs_path": "$HOME/qlc/obs/data/ver0d",
+    "obs_dataset_type": "ebas_daily",
+    "start_date": "2018-01-01",
+    "end_date": "2018-12-31",
+    "variable": "SO2,SO4,HNO3,NO3,NH3,NH4",
+    "station_radius_deg": 10.0,
+    "plot_type": "",
+    "plot_region": "EU",
+    "time_average": "daily, weekly, monthly",
+    "station_plot_group_size": 5,
+    "show_stations": false,
+    "show_min_max": true,
+    "log_y_axis": false,
+    "fix_y_axis": true,
+    "show_station_map": true,
+    "load_station_timeseries_obs": true,
+    "show_station_timeseries_obs": true,
+    "show_station_timeseries_mod": false,
+    "show_station_timeseries_com": false,
+    "save_plot_format": "pdf",
+    "save_data_format": "nc",
+    "multiprocessing": true,
+    "n_threads": "20",
+    "debug": false,
+
+    "global_attributes": {
+      "title": "Air pollutants over Europe, SO2,SO4,HNO3,NO3,NH3,NH4",
+      "summary": "Custom summary for netCDF output: Ebas daily observations for selected EU stations.",
+      "author": "Plain & Simple, plain.simple@example.com",
+      "history": "Processed for CAMS (test 1.1)",
+      "Conventions": "CF-1.8"
+    }
+  }
+]

qlc/config/json/qlc_config_example_1a_all-obs.json

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+[
+  {
+    "name": "CAMS2_35",
+    "logdir": "./log",
+    "workdir": "./run",
+    "output_base_name": "$HOME/qlc/output/GMD",
+    "station_file": "$HOME/qlc/obs/data/castnet_station-locations.csv",
+    "obs_path": "$HOME/qlc/obs",
+    "obs_dataset_type": "AMoN",
+    "start_date": "2018-01-01",
+    "end_date": "2018-12-31",
+    "variable": "NH3",
+    "station_radius_deg": 10.0,
+    "plot_type": "",
+    "plot_region": "US",
+    "time_average": "weekly, monthly",
+    "station_plot_group_size": 5,
+    "show_stations": false,
+    "show_min_max": true,
+    "log_y_axis": false,
+    "fix_y_axis": true,
+    "show_station_map": true,
+    "load_station_timeseries_obs": true,
+    "show_station_timeseries_obs": true,
+    "show_station_timeseries_mod": false,
+    "show_station_timeseries_com": false,
+    "save_plot_format": "pdf",
+    "save_data_format": "nc",
+    "multiprocessing": true,
+    "n_threads": "20",
+    "debug": false,
+
+    "global_attributes": {
+      "title": "Air pollutants over US, NH3",
+      "summary": "AMoN bi-weekly observations for selected US stations.",
+      "author": "Swen Metzger, sm@researchconcepts.io",
+      "history": "Processed for CAMS2_35bis (dev 1.2)",
+      "Conventions": "CF-1.8"
+    }
+  },
+  {
+    "name": "CAMS2_35",
+    "logdir": "./log",
+    "workdir": "./run",
+    "output_base_name": "$HOME/qlc/output/GMD",
+    "station_file": "$HOME/qlc/obs/data/castnet_station-locations.csv",
+    "obs_path": "$HOME/qlc/obs/data/ver0d",
+    "obs_dataset_type": "airnow",
+    "start_date": "2018-01-01",
+    "end_date": "2018-12-31",
+    "variable": "SO2",
+    "station_radius_deg": 10.0,
+    "plot_type": "",
+    "plot_region": "US",
+    "time_average": "weekly, monthly",
+    "station_plot_group_size": 5,
+    "show_stations": false,
+    "show_min_max": true,
+    "log_y_axis": false,
+    "fix_y_axis": true,
+    "show_station_map": true,
+    "load_station_timeseries_obs": true,
+    "show_station_timeseries_obs": true,
+    "show_station_timeseries_mod": false,
+    "show_station_timeseries_com": false,
+    "save_plot_format": "pdf",
+    "save_data_format": "nc",
+    "multiprocessing": true,
+    "n_threads": "20",
+    "debug": false,
+
+    "global_attributes": {
+      "title": "Air pollutants over US, SO2",
+      "summary": "Airnow bi-weekly observations for selected US stations.",
+      "author": "Swen Metzger, sm@researchconcepts.io",
+      "history": "Processed for CAMS2_35bis (dev 1.2)",
+      "Conventions": "CF-1.8"
+    }
+  },
+  {
+    "name": "CAMS2_35",
+    "logdir": "./log",
+    "workdir": "./run",
+    "output_base_name": "$HOME/qlc/output/GMD",
+    "station_file": "$HOME/qlc/obs/data/Asia_station_list.csv",
+    "obs_path": "$HOME/qlc/obs/data/ver0d",
+    "obs_dataset_type": "china_aq",
+    "start_date": "2018-01-01",
+    "end_date": "2018-12-31",
+    "variable": "SO2",
+    "station_radius_deg": 20.0,
+    "plot_type": "",
+    "plot_region": "Asia",
+    "time_average": "weekly, monthly",
+    "station_plot_group_size": 5,
+    "show_stations": false,
+    "show_min_max": true,
+    "log_y_axis": false,
+    "fix_y_axis": true,
+    "show_station_map": true,
+    "load_station_timeseries_obs": true,
+    "show_station_timeseries_obs": true,
+    "show_station_timeseries_mod": false,
+    "show_station_timeseries_com": false,
+    "save_plot_format": "pdf",
+    "save_data_format": "nc",
+    "multiprocessing": true,
+    "n_threads": "20",
+    "debug": false,
+    "debug_extended": false,
+
+    "global_attributes": {
+      "title": "Air pollutants over Asia, SO2",
+      "summary": "China AQ monthly observations for selected Asia stations.",
+      "author": "Swen Metzger, sm@researchconcepts.io",
+      "history": "Processed for CAMS2_35bis (dev 1.2)",
+      "Conventions": "CF-1.8"
+    }
+  },
+  {
+    "name": "CAMS2_35",
+    "logdir": "./log",
+    "workdir": "./run",
+    "output_base_name": "$HOME/qlc/output/GMD",
+    "station_file": "$HOME/qlc/obs/data/ebas_station-locations.csv",
+    "obs_path": "$HOME/qlc/obs/data/ver0d",
+    "obs_dataset_type": "ebas_daily",
+    "start_date": "2018-01-01",
+    "end_date": "2018-12-31",
+    "variable": "SO2,SO4,HNO3,NO3,NH3,NH4",
+    "station_radius_deg": 10.0,
+    "plot_type": "",
+    "plot_region": "EU",
+    "time_average": "weekly, monthly",
+    "station_plot_group_size": 5,
+    "show_stations": false,
+    "show_min_max": true,
+    "log_y_axis": false,
+    "fix_y_axis": true,
+    "show_station_map": true,
+    "load_station_timeseries_obs": true,
+    "show_station_timeseries_obs": true,
+    "show_station_timeseries_mod": false,
+    "show_station_timeseries_com": false,
+    "save_plot_format": "pdf",
+    "save_data_format": "nc",
+    "multiprocessing": true,
+    "n_threads": "20",
+    "debug": false,
+
+    "global_attributes": {
+      "title": "Air pollutants over Europe, SO2,SO4,HNO3,NO3,NH3,NH4",
+      "summary": "Ebas daily observations for selected EU stations.",
+      "author": "Swen Metzger, sm@researchconcepts.io",
+      "history": "Processed for CAMS (dev 1.2)",
+      "Conventions": "CF-1.8"
+    }
+  },
+  {
+    "name": "CAMS2_35",
+    "logdir": "./log",
+    "workdir": "./run",
+    "output_base_name": "$HOME/qlc/output/GMD",
+    "station_file": "$HOME/qlc/obs/data/castnet_station-locations.csv",
+    "obs_path": "$HOME/qlc/obs",
+    "obs_dataset_type": "castnet",
+    "start_date": "2018-01-01",
+    "end_date": "2018-12-31",
+    "variable": "SO2,SO4,HNO3,NO3,NH4,NH3",
+    "station_radius_deg": 10.0,
+    "plot_type": "",
+    "plot_region": "US",
+    "time_average": "weekly, monthly",
+    "station_plot_group_size": 5,
+    "show_stations": false,
+    "show_min_max": true,
+    "log_y_axis": false,
+    "fix_y_axis": true,
+    "show_station_map": true,
+    "load_station_timeseries_obs": true,
+    "show_station_timeseries_obs": true,
+    "show_station_timeseries_mod": false,
+    "show_station_timeseries_com": false,
+    "save_plot_format": "pdf",
+    "save_data_format": "nc",
+    "multiprocessing": true,
+    "n_threads": "20",
+    "debug": false,
+
+    "global_attributes": {
+      "title": "Air pollutants over US, SO2,SO4,HNO3,NO3,NH4,NH3",
+      "summary": "CASTNET weekly observations for selected US stations.",
+      "author": "Swen Metzger, sm@researchconcepts.io",
+      "history": "Processed for CAMS2_35bis (dev 1.2)",
+      "Conventions": "CF-1.8"
+    }
+  },
+  {
+    "name": "CAMS2_35",
+    "logdir": "./log",
+    "workdir": "./run",
+    "output_base_name": "$HOME/qlc/output/GMD",
+    "station_file": "$HOME/qlc/obs/data/Asia_station_list.csv",
+    "obs_path": "$HOME/qlc/obs",
+    "obs_dataset_type": "NNDMN",
+    "start_date": "2018-01-01",
+    "end_date": "2018-12-31",
+    "variable": "HNO3,NO3,NH4,NH3",
+    "station_radius_deg": 50.0,
+    "plot_type": "",
+    "plot_region": "Asia",
+    "time_average": "weekly, monthly",
+    "station_plot_group_size": 5,
+    "show_stations": false,
+    "show_min_max": true,
+    "log_y_axis": false,
+    "fix_y_axis": true,
+    "show_station_map": true,
+    "load_station_timeseries_obs": true,
+    "show_station_timeseries_obs": true,
+    "show_station_timeseries_mod": false,
+    "show_station_timeseries_com": false,
+    "save_plot_format": "pdf",
+    "save_data_format": "nc",
+    "multiprocessing": true,
+    "n_threads": "20",
+    "debug": false,
+
+    "global_attributes": {
+      "title": "Air pollutants over Asia, HNO3,NO3,NH4,NH3",
+      "summary": "NNDMN monthly observations for selected Asia stations.",
+      "author": "Swen Metzger, sm@researchconcepts.io",
+      "history": "Processed for CAMS2_35bis (dev 1.2)",
+      "Conventions": "CF-1.8"
+    }
+  }
+]