rc-qlc 0.3.24__cp310-cp310-macosx_11_0_arm64.whl → 0.3.25__cp310-cp310-macosx_11_0_arm64.whl

qlc/config/json/qlc_config_example_4c_eu-coll.json

@@ -1,45 +0,0 @@
-[
-  {
-    "name": "CAMS2_35",
-    "logdir": "./log",
-    "workdir": "./run",
-    "output_base_name": "$HOME/qlc/output/GMD",
-    "station_file": "$HOME/qlc/obs/data/ebas_station-locations.csv",
-    "obs_path": "$HOME/qlc/obs/data/ver0d",
-    "obs_dataset_type": "ebas_daily",
-    "mod_path": "$HOME/qlc/mod/",
-    "model": "ifs",
-    "experiments": "hylm,i3bw,i3ad",
-    "exp_labels": "CY48R1,CY49R1_NOE4C,CY49R1",
-    "start_date": "2018-12-01",
-    "end_date": "2018-12-31",
-    "variable": "SO2,SO4,HNO3,NO3,NH3,NH4",
-    "station_radius_deg": 0.5,
-    "plot_type": "",
-    "plot_region": "EU",
-    "time_average": "daily,weekly",
-    "station_plot_group_size": 5,
-    "show_stations": false,
-    "show_min_max": true,
-    "log_y_axis": false,
-    "fix_y_axis": true,
-    "show_station_map": true,
-    "load_station_timeseries_obs": false,
-    "show_station_timeseries_obs": false,
-    "show_station_timeseries_mod": false,
-    "show_station_timeseries_com": true,
-    "save_plot_format": "pdf",
-    "save_data_format": "nc",
-    "multiprocessing": true,
-    "n_threads": "4",
-    "debug": false,
-
-    "global_attributes": {
-      "title": "Air pollutants over Europe, SO2,SO4,HNO3,NO3,NH4,NH3",
-      "summary": "EBAS daily observations for selected EU stations.",
-      "author": "Swen Metzger, sm@researchconcepts.io",
-      "history": "Processed for CAMS2_35bis (dev 1.2)",
-      "Conventions": "CF-1.8"
-    }
-  }
-]

qlc/config/qlc_cams.conf

@@ -1,26 +0,0 @@
-#----------------------------------------------------------------------
-#----------------------- QLC version to be used -------------------
-QLC_VERSION="VERSION"
-#----------------------- Path definitions -------------------------
-QLC_HOME="$HOME/qlc"
-QLC_DIRECTORY="${QLC_HOME}_v${QLC_VERSION}/cams"
-SCRIPTS_PATH="${QLC_DIRECTORY}/bin"
-WORKING_DIRECTORY="$SCRATCH/qlc"
-MARS_RETRIEVAL_DIRECTORY="$SCRATCH/qlc/Results"
-ANALYSIS_DIRECTORY="$HPCPERM/qlc/Analysis"
-PLOTS_DIRECTORY="$PERM/qlc/Plots"
-TEX_DIRECTORY="$PERM/qlc/Presentations"
-#----------------------- PDF presentation and info  -------------
-TEAM_PREFIX="CAMS2_35"
-EVALUATION_PREFIX="EVAL"
-MODEL_RESOLUTION="T255L137"
-TIME_RESOLUTION="03hh"
-#----------------------------------------------------------------------
-# User specific configuration file
-CONFIG_DIR="$HOME/qlc/config"
-CONFIG_TEX="$CONFIG_DIR/qlc_tex.conf"
-#----------------------------------------------------------------------
-# Source the tex script configuration file to load the settings
-. "$CONFIG_TEX"
-#----------------------------------------------------------------------
-#----------------------------------------------------------------------

qlc/config/qlc_test.conf

@@ -1,26 +0,0 @@
-#----------------------------------------------------------------------
-#----------------------- QLC version to be used -------------------
-QLC_VERSION="VERSION"
-#----------------------- Path definitions -------------------------
-QLC_HOME="$HOME/qlc"
-QLC_DIRECTORY="${QLC_HOME}_v${QLC_VERSION}/test"
-SCRIPTS_PATH="${QLC_DIRECTORY}/bin"
-WORKING_DIRECTORY="${QLC_DIRECTORY}"
-MARS_RETRIEVAL_DIRECTORY="${QLC_HOME}/Results"
-ANALYSIS_DIRECTORY="${QLC_HOME}/Analysis"
-PLOTS_DIRECTORY="${QLC_HOME}/Plots"
-TEX_DIRECTORY="${QLC_HOME}/Presentations"
-#----------------------- PDF presentation and info  -------------
-TEAM_PREFIX="CAMS2_35"
-EVALUATION_PREFIX="EVAL"
-MODEL_RESOLUTION="T255L137"
-TIME_RESOLUTION="03hh"
-#----------------------------------------------------------------------
-# User specific configuration file
-CONFIG_DIR="$HOME/qlc/config"
-CONFIG_TEX="$CONFIG_DIR/qlc_tex.conf"
-#----------------------------------------------------------------------
-# Source the tex script configuration file to load the settings
-. "$CONFIG_TEX"
-#----------------------------------------------------------------------
-#----------------------------------------------------------------------

qlc/config/qlc_tex.conf

@@ -1,107 +0,0 @@
-#----------------------------------------------------------------------
-#----------------------- PDF presentation and info  -------------
-#PLOTEXTENSION="pdf"
-PLOTEXTENSION="png"
-#----------------------- Run-time definitions -------------------------
-#- 1. Definition of QLC complexity through selection of subscripts
-#----------------------------------------------------------------------
-#- (a) QLC unified data analysis and plotting (entries optional) 
-#----------------------------------------------------------------------
-#SUBSCRIPT_NAMES=("A1" "B1" "B2" "C1" "D1" "E1" "F1" "G1" "Z1")
-#SUBSCRIPT_NAMES=("C5" "Z1")
-SUBSCRIPT_NAMES=("A1" "B1a" "B2" "C5" "Z1")
-#----------------------------------------------------------------------
-#- (b) QLC unified mars data retrieval (SUBSCRIPT_NAME, A1, A2, A3, ...) 
-#- Mars retrievals for namelist : nml/mars_A2.nml, nml/mars_B2.nml, ...)
-#----------------------------------------------------------------------
-#- MARS_RETRIEVALS=("A2_sfc" "B2_pl" "C2_pl" "C3_ml" "D"  "E"  "F" "I")
-#- O3, NH3 and NH4_as
-MARS_RETRIEVALS=("A3_sfc" "B1_pl" "C1_pl")
-#----------------------------------------------------------------------
-#- un/comment MARS_RETRIEVALS (choose one or combine contents into one)
-#- The MARS_RETRIEVALS mapping is required for subscript processing (a)
-#----------------------------------------------------------------------
-#- Key variables (AOD, PM + gases and aerosols)
-# MARS_RETRIEVALS=("A2_sfc" "B2_pl" "C2_pl")
-#- pH variables (rain, cloud, aerosol pH and water)
-# MARS_RETRIEVALS=("D" "F" "G")
-#- Extended aerosol diagnostics (requires E4C and active 4D output)
-# MARS_RETRIEVALS=("E")
-#- PSC frequency (requires E4C output)
-# MARS_RETRIEVALS=("H")
-#- Meteo output (e.g., T, SH, RH)
-# MARS_RETRIEVALS=("I")
-#----------------------------------------------------------------------
-#----------------------------------------------------------------------
-#- 2. Variable mapping and definition (to be processed by subscripts) 
-#- (number of array elements need to match mars retrieval, if active)
-#----------------------------------------------------------------------
-#- e.g., surface variables (sfc)
-#----------------------------------------------------------------------
-param_A1_sfc=("73.210")
-ncvar_A1_sfc=("var73")
-myvar_A1_sfc=("PM25")
-#----------------------------------------------------------------------
-param_A2_sfc=("207.210" "72.210"  "73.210"  "74.210")
-ncvar_A2_sfc=("var207"  "var72"   "var73"   "var74")
-myvar_A2_sfc=("AOD"     "PM1"     "PM25"   "PM10")
-#----------------------------------------------------------------------
-param_A3_sfc=("203.210")
-ncvar_A3_sfc=("go3")
-myvar_A3_sfc=("O3")
-#----------------------------------------------------------------------
-#- e.g., gases (pressure levels, pl)
-#----------------------------------------------------------------------
-param_B1_pl=("19.217")
-ncvar_B1_pl=("var19")
-myvar_B1_pl=("NH3")
-#----------------------------------------------------------------------
-param_B2_pl=("19.217"  "6.217"   "122.210" "203.210")
-ncvar_B2_pl=("var19"   "var6"    "var122"  "var203")
-myvar_B2_pl=("NH3"     "HNO3"    "SO2"     "O3")
-#----------------------------------------------------------------------
-#- e.g., aerosols (pressure levels, pl)
-#----------------------------------------------------------------------
-param_C1_pl=("35.212")
-ncvar_C1_pl=("var35")
-myvar_C1_pl=("NH4_as")
-#----------------------------------------------------------------------
-param_C2_pl=("36.212" "35.212" "2.212" "1.212")
-ncvar_C2_pl=("var36"  "var35"  "var2"  "var1" )
-myvar_C2_pl=("NO3_as" "NH4_as" "SO4_as" "N_as")
-#----------------------------------------------------------------------
-param_C3_ml=("247.210" "248.210" "249.210" "11.210")
-ncvar_C3_ml=("var247"  "var248"  "var249"  "var11" )
-myvar_C3_ml=("NO3a"    "NO3b"    "NH4"     "SO4")
-#----------------------------------------------------------------------
-#- e.g., aerosol diagnostics
-#----------------------------------------------------------------------
-param_D=("51.212"  "52.212")
-ncvar_D=("var51"   "var52")
-myvar_D=("pHcloud" "pHrain")
-#----------------------------------------------------------------------
-param_E=("210025")
-ncvar_E=("aergn10")
-myvar_E=("EQdiag")
-#----------------------------------------------------------------------
-param_F=("22.210")
-ncvar_F=("aergn07")
-myvar_F=("pHaer")
-#----------------------------------------------------------------------
-param_G=("22.210")
-ncvar_G=("aergn07")
-myvar_G=("AW")
-#----------------------------------------------------------------------
-#- e.g., stratospheric diagnostics
-#----------------------------------------------------------------------
-param_H=("25.210")
-ncvar_H=("aergn10")
-myvar_H=("PSCfreq")
-#----------------------------------------------------------------------
-#- e.g., meteo fields
-#----------------------------------------------------------------------
-param_I=("130"     "133"      "157")
-ncvar_I=("var130"  "var133"   "var157")
-myvar_I=("T"       "SH"       "RH")
-#----------------------------------------------------------------------
-#----------------------------------------------------------------------

qlc/examples/cams_case_1/config/json/qlc_config.json

@@ -1,41 +0,0 @@
-[
-  {
-    "name": "CAMS2_35",
-    "logdir": "./log",
-    "workdir": "./run",
-    "output_base_name": "$HOME/qlc/output/GMD",
-    "station_file": "$HOME/qlc/obs/data/ebas_station-locations.csv",
-    "obs_path": "$HOME/qlc/obs/data/ver0d",
-    "obs_dataset_type": "ebas_daily",
-    "start_date": "2018-01-01",
-    "end_date": "2018-12-31",
-    "variable": "SO2,SO4,HNO3,NO3,NH3,NH4",
-    "station_radius_deg": 10.0,
-    "plot_type": "",
-    "plot_region": "EU",
-    "time_average": "daily, weekly, monthly",
-    "station_plot_group_size": 5,
-    "show_stations": false,
-    "show_min_max": true,
-    "log_y_axis": false,
-    "fix_y_axis": true,
-    "show_station_map": true,
-    "load_station_timeseries_obs": true,
-    "show_station_timeseries_obs": true,
-    "show_station_timeseries_mod": false,
-    "show_station_timeseries_com": false,
-    "save_plot_format": "pdf",
-    "save_data_format": "nc",
-    "multiprocessing": true,
-    "n_threads": "20",
-    "debug": false,
-
-    "global_attributes": {
-      "title": "Air pollutants over Europe, SO2,SO4,HNO3,NO3,NH3,NH4",
-      "summary": "Custom summary for netCDF output: Ebas daily observations for selected EU stations.",
-      "author": "Plain & Simple, plain.simple@example.com",
-      "history": "Processed for CAMS (test 1.1)",
-      "Conventions": "CF-1.8"
-    }
-  }
-]

qlc/examples/cams_case_1/config/nml/mars_B1_pl.nml

@@ -1,19 +0,0 @@
-# adopt to your needs, except for EXP, SDATE, EDATE, MYPATH, MYFILE, which will be auto-replaced
-# add your param_, ncvar_ and myvar_ to your $HOME/qlc/qlc.conf file
-# param_B=("19.217"  "6.217"   "122.210" "203.210")
-# ncvar_B=("var19"   "var6"    "var122"  "var203")
-# myvar_B=("NH3"     "HNO3"    "SO2"     "O3")
-# pressure levels
-RETRIEVE,
-CLASS      = XCLASS,
-TYPE       = fc, 
-STREAM     = oper,
-EXPVER     = EXP,
-PARAM      = 19.217,
-LEVTYPE    = pl,
-GRID       = 1.0/1.0,
-TIME       = 00:00:00,
-STEP       = 0/6/12/18,
-LEVELIST   = 10/20/30/50/70/100/150/200/250/300/400/500/700/850/925/1000,
-DATE       = SDATE/to/EDATE,
-target     = "MYPATH/MYFILE_B1_pl.grb"

qlc/sh/qlc_start.sh

@@ -1,23 +0,0 @@
-#!/bin/sh
-SCRIPT="$0"
-echo  "________________________________________________________________________________________"
-echo  "Start ${SCRIPT} at `date`"
-#echo "----------------------------------------------------------------------------------------"
-#echo "Copyright (c) 2021-2025 ResearchConcepts io GmbH. All Rights Reserved.                  "
-#echo "Questions / comments to: Swen M. Metzger <sm@researchconcepts.io>                       "
-echo  "----------------------------------------------------------------------------------------"
-if [ "$1" == "" ] ;then
-ls -lrth $HOME/qlc/log/qlc*
-echo "type, e.g.:"
-echo "$HOME/qlc/bin/qlc_start.sh b2ro iqi9 2018-12-01 2018-12-31 mars log001"
-echo  "________________________________________________________________________________________"
-echo  "End   ${SCRIPT} at `date`"
-echo  "________________________________________________________________________________________"
-exit 0
-fi
-$HOME/qlc/bin/qlc $1 $2 $3 $4 $5 mars >& $HOME/qlc/log/qlc.$6 &
-echo "tail -f                            $HOME/qlc/log/qlc.$6"
-echo  "________________________________________________________________________________________"
-echo  "End   ${SCRIPT} at `date`"
-echo  "________________________________________________________________________________________"
-exit 0

qlc/sh/qlc_start_batch.sh

@@ -1,46 +0,0 @@
-#!/bin/sh -e
-SCRIPT="$0"
-echo  "________________________________________________________________________________________"
-echo  "Start ${SCRIPT} at `date`"
-#echo "----------------------------------------------------------------------------------------"
-#echo "Copyright (c) 2021-2025 ResearchConcepts io GmbH. All Rights Reserved.                  "
-#echo "Questions / comments to: Swen M. Metzger <sm@researchconcepts.io>                       "
-echo  "----------------------------------------------------------------------------------------"
-if [ "$1" == "" ] ;then
-echo "type, e.g.:"
-echo "$HOME/qlc/bin/sqlc b2ro iqi9 2018-12-01 2018-12-31"
-echo "$HOME/qlc/bin/sqlc b2ro iqi9 2018-12-01 2018-12-31 mars"
-echo "Use option 'mars' to retrieve files and then submit a dependency job once all data have been retrieved."
-echo "Or, option 'mars' can be skipped, if all data are already present in $HOME/qlc/Results"
-echo  "________________________________________________________________________________________"
-echo  "End   ${SCRIPT} at `date`"
-echo  "________________________________________________________________________________________"
-exit 0
-fi
-if [ "$5" == "mars" ] ;then
-jobid='${SLURM_JOB_ID}'
-cat > $HOME/qlc/run/qlc_batch.sh$$<<EOF
-#!/bin/ksh -e
-#SBATCH --job-name=$HOME/qlc/run/qlc_batch.sh$$
-#SBATCH --output=log-%J.out
-#SBATCH --error=err-%J.out
-#SBATCH --export=ALL
-$HOME/qlc/bin/qlc $1 $2 $3 $4 $5
-echo "SLURM_JOB_ID = ${jobid}"
-sbatch --dependency=afterok:${jobid} --mail-user=$USER@ecmwf.int $HOME/qlc/bin/qlc $1 $2 $3 $4
-EOF
-else
-cat > $HOME/qlc/run/qlc_batch.sh$$<<EOF
-#!/bin/ksh -e
-#SBATCH --job-name=$HOME/qlc/run/qlc_batch.sh$$
-#SBATCH --output=log-%J.out
-#SBATCH --error=err-%J.out
-$HOME/qlc/bin/qlc $1 $2 $3 $4
-EOF
-fi
-sbatch $HOME/qlc/run/qlc_batch.sh$$
-squeue -u "$USER"
-echo  "________________________________________________________________________________________"
-echo  "End   ${SCRIPT} at `date`"
-echo  "________________________________________________________________________________________"
-exit 0

rc_qlc-0.3.24.dist-info/METADATA

@@ -1,142 +0,0 @@
-Metadata-Version: 2.4
-Name: rc-qlc
-Version: 0.3.24
-Summary: Quick Look Content (QLC): Model–Observation Comparison Suite for Use with CAMS
-Home-page: https://pypi.org/project/qlc/
-Author-email: ResearchConcepts io GmbH <contact@researchconcepts.io>
-License: MIT
-Requires-Python: >=3.10
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: numpy
-Requires-Dist: pandas
-Requires-Dist: matplotlib
-Requires-Dist: xarray
-Requires-Dist: netCDF4
-Requires-Dist: scipy
-Requires-Dist: cartopy
-Requires-Dist: tqdm
-Provides-Extra: build
-Requires-Dist: tomli; extra == "build"
-Provides-Extra: test
-Requires-Dist: pytest; extra == "test"
-Provides-Extra: cams
-Dynamic: home-page
-Dynamic: license-file
-
-# Quick Look Content (QLC): Model–Observation Comparison Suite for Use with CAMS
-
-`qlc` is a single command-line tool for model–observation comparisons with automated figures and summaries,
-designed to support climate and air quality monitoring and specifically adapted for use with CAMS (Copernicus Atmospheric Monitoring Service) datasets.
-
-| Package | Status |
-|---------|--------|
-| [rc-qlc on PyPI](https://pypi.org/project/rc-qlc/) | ![PyPI](https://img.shields.io/pypi/v/rc-qlc?color=blue) |
-
----
-
-## Features
-
-- Side-by-side evaluation of observational and modelled data
-- Fully scriptable and automated post-processing chain 
-- Modular structure using shell + Python + Cython
-- Generates publication-ready figures and LaTeX integration
-- Supports NetCDF and CSV time series formats
-- Pre-configured CAMS observational interface via JSON
-
----
-
-## User Installation
-
-Use one of the following install modes:
-
-```bash
-# Option 1: CAMS (default data links + config)
-pip install rc-qlc && qlc-install --cams
-
-# Option 2: Local test mode with embedded examples
-pip install rc-qlc && qlc-install --test
-
-# Option 3: Custom interactive mode
-pip install rc-qlc && qlc-install --interactive="./path/to/qlc_user.conf"
-```
-
----
-
-## Example Use Cases
-
-### Run the full shell pipeline (retrieval, processing, plotting):
-```bash
-qlc
-```
-
-### Run just the observation/model comparison in Python:
-```bash
-qlc-py
-```
-
-### Submit via batch system (e.g., SLURM or LSF):
-```bash
-sqlc
-```
-
-## Developer Setup
-
-To work on the `qlc` source code, clone the repository and install it in "editable" mode. This will install all dependencies and link the `qlc` command to your source tree.
-
-```bash
-# 1. Clone the repository
-git clone https://github.com/researchConcepts/qlc.git
-cd qlc
-
-# 2. (Recommended) Create and activate a virtual environment
-python3 -m venv .venv
-source .venv/bin/activate
-
-# 3. Install in editable mode
-pip install -e .
-```
-
----
-
-## Configuration Structure
-
-The installer script creates the following structure in your home directory:
-```
-$HOME/qlc_v<version>/
-├── test/                   # Root directory for the 'test' installation mode
-│   ├── bin/                # Symlinks to shell scripts
-│   ├── doc/                # Symlinks to documentation
-│   ├── config/             # Active config files (e.g., qlc.conf)
-│   ├── examples/           # Test input and output files
-│   ├── obs/, mod/, ...     # Runtime directories
-│   └── VERSION.json        # Tracks install mode and version
-└── cams/                   # Root for 'cams' mode, etc.
-```
-A symlink `$HOME/qlc` is also created to point to the active installation. You can edit `$HOME/qlc/config/qlc.conf` to modify runtime behavior.
-
----
-
-## Documentation
-
-- All core logic is contained in the `qlc` package.
-- Shell scripts for driving the pipeline are in `qlc/sh/`.
-- The core Python/Cython logic is in `qlc/py/*.py` and is compiled to binary modules for performance.
-
----
-
-## Developer Notes
-
-- Python source files (`.py`) are compiled to binary modules (`.so`) using Cython at install time.
-- The package version is managed in `pyproject.toml`.
-- The `qlc-install` script sets up the runtime environment by creating directories and symlinks.
-
----
-
-## License
-
-© ResearchConcepts io GmbH  
-Contact: [contact@researchconcepts.io](mailto:contact@researchconcepts.io)  
-MIT-compatible, source-restricted under private release until publication.
-
----

rc_qlc-0.3.24.dist-info/RECORD

@@ -1,113 +0,0 @@
-rc_qlc-0.3.24.dist-info/RECORD,,
-rc_qlc-0.3.24.dist-info/WHEEL,sha256=wyHf6UDzyHyUK-aDYscyyyExpYI7SeEZ9xjyEiU4cnw,109
-rc_qlc-0.3.24.dist-info/entry_points.txt,sha256=haCqahVrnFhVkfBt0HoOuVpKGV1KJOKpC1v75lOBl_s,191
-rc_qlc-0.3.24.dist-info/top_level.txt,sha256=Czv4KZhpli6RXvgvtCB1g87eRNEM2R-8iHplel1Qp5Q,4
-rc_qlc-0.3.24.dist-info/METADATA,sha256=BGsnqbpFJtHnSYNGJRLfkchn2Dt5lR4sdI3Q6qkC5BI,4190
-rc_qlc-0.3.24.dist-info/licenses/LICENSE,sha256=1pYHFCPjSx9_0weOUVJ-SpSin1dm6nSMzeO8Jj_qKuo,1081
-qlc/__init__.py,sha256=cmqybybgtiIwlVJIUfWOtP65yM1WzykLc1QRgdLANtI,208
-qlc/install.py,sha256=PpgLMiAbyBuIXt1sGCr8jZuWTKBtllsDi0QpB88K060,10985
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-qlc/py/processing.cpython-310-darwin.so,sha256=CDsTrL_6HX1fmn-JRZW76AGJQVwKqKNtrUpub3gwup0,123360
-qlc/py/loadobs.cpython-310-darwin.so,sha256=yd2Ns0RCJFUzq2bCBTOeWH81DKpoaKeoKYA_ACGRi6Y,181232
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-qlc/py/averaging.cpython-310-darwin.so,sha256=xOFa5allTrb3ffxsACdS3GoDTbj9lLISoSDBheN-KPE,83072
-qlc/py/style.cpython-310-darwin.so,sha256=21rHbWgUgclxK0dSPwoNuqM0TN_DII5kEnUvRz_QbuY,299528
-qlc/py/plot_config.cpython-310-darwin.so,sha256=V3O1RkUdZWaFCCbRmNkFzrOPk8Ym7JAYHdNh_gbs3zg,79760
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